Wall clock time and date at job start Tue Mar 31 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47072 * 2 1 4 4 C 1.53001 * 109.46893 * 240.00287 * 2 1 3 5 5 N 1.46506 * 109.47017 * 65.00057 * 4 2 1 6 6 C 1.46504 * 119.99919 * 269.99692 * 5 4 2 7 7 C 1.34776 * 119.99968 * 90.00323 * 5 4 2 8 8 O 1.21585 * 119.99971 * 4.94520 * 7 5 4 9 9 N 1.34770 * 120.00101 * 184.94893 * 7 5 4 10 10 C 1.46493 * 120.00226 * 185.04145 * 9 7 5 11 11 C 1.53006 * 109.47352 * 184.84578 * 10 9 7 12 12 C 1.50699 * 115.54918 * 54.16682 * 11 10 9 13 13 H 1.07998 * 120.00280 * 215.59445 * 12 11 10 14 14 C 1.37873 * 120.00160 * 35.31692 * 12 11 10 15 15 N 1.31522 * 119.99825 * 13.39565 * 14 12 11 16 16 Si 1.86799 * 120.00367 * 193.39383 * 14 12 11 17 17 H 1.48498 * 109.47002 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47097 * 119.99865 * 16 14 12 19 19 H 1.48501 * 109.47042 * 239.99978 * 16 14 12 20 20 C 1.52997 * 117.50131 * 199.83661 * 11 10 9 21 21 C 1.53002 * 117.49832 * 268.50052 * 11 10 9 22 22 C 1.50696 * 109.46934 * 120.00495 * 2 1 3 23 23 O 1.20831 * 119.99915 * 120.00069 * 22 2 1 24 24 O 1.34224 * 120.00011 * 299.99714 * 22 2 1 25 25 H 1.08995 * 109.47009 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46906 * 299.99841 * 1 2 3 27 27 H 1.09000 * 109.46697 * 59.99658 * 1 2 3 28 28 H 1.09004 * 109.47528 * 304.99965 * 4 2 1 29 29 H 1.08995 * 109.46983 * 185.00190 * 4 2 1 30 30 H 1.09000 * 109.46978 * 238.29349 * 6 5 4 31 31 H 1.09001 * 109.46952 * 358.28981 * 6 5 4 32 32 H 1.08994 * 109.46970 * 118.29100 * 6 5 4 33 33 H 0.97005 * 119.99852 * 5.04848 * 9 7 5 34 34 H 1.09001 * 109.47275 * 64.84736 * 10 9 7 35 35 H 1.09004 * 109.47121 * 304.84351 * 10 9 7 36 36 H 0.97003 * 119.99792 * 184.96471 * 15 14 12 37 37 H 1.08998 * 117.50117 * 215.00201 * 20 11 10 38 38 H 1.09006 * 117.49639 * 0.02572 * 20 11 10 39 39 H 1.09000 * 117.49654 * 359.96850 * 21 11 10 40 40 H 1.09000 * 117.50022 * 144.97502 * 21 11 10 41 41 H 0.96707 * 117.00259 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 0.3745 -0.2422 -3.1028 7 6 2.4715 0.9870 -2.9325 8 8 3.5701 1.1561 -2.4398 9 7 2.0728 1.7510 -3.9687 10 6 3.0022 2.7089 -4.5727 11 6 2.2704 3.5265 -5.6391 12 6 1.0142 4.2197 -5.1781 13 1 0.1719 4.3125 -5.8476 14 6 0.9381 4.7304 -3.8997 15 7 2.0285 4.8527 -3.1745 16 14 -0.7135 5.2486 -3.1977 17 1 -1.7767 5.0119 -4.2071 18 1 -1.0036 4.4543 -1.9769 19 1 -0.6732 6.6920 -2.8511 20 6 3.1224 4.2358 -6.6935 21 6 2.3011 3.0019 -7.0760 22 6 2.0324 -0.7105 1.2304 23 8 2.7270 -1.6929 1.1194 24 8 1.7081 -0.2520 2.4495 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -1.7198 -1.2953 29 1 3.1263 -0.7995 -1.2057 30 1 0.5555 -0.5265 -4.1394 31 1 -0.1322 -1.0570 -2.5857 32 1 -0.2505 0.6504 -3.0747 33 1 1.1704 1.6668 -4.3144 34 1 3.8308 2.1705 -5.0329 35 1 3.3864 3.3776 -3.8024 36 1 1.9667 5.1438 -2.2512 37 1 2.7743 5.2038 -7.0539 38 1 4.2042 4.1197 -6.6278 39 1 2.8431 2.0746 -7.2617 40 1 1.4126 3.1578 -7.6879 41 1 2.0542 -0.7408 3.2088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589023203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:28 Heat of formation + Delta-G solvation = -96.182423 kcal Electronic energy + Delta-G solvation = -23542.148396 eV Core-core repulsion = 20037.165830 eV Total energy + Delta-G solvation = -3504.982566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52788 -39.42580 -36.97037 -36.28158 -35.61827 -33.53083 -32.48360 -32.11538 -27.77443 -26.44379 -25.53322 -24.96808 -23.84121 -21.24091 -20.67423 -19.28997 -19.01127 -18.11229 -17.49964 -16.96781 -16.21954 -15.78080 -15.36699 -15.16760 -14.72558 -14.12122 -13.97016 -13.71611 -13.26987 -13.24410 -12.80937 -12.74398 -12.45648 -12.36147 -11.96369 -11.68996 -11.63778 -11.59194 -11.33585 -11.05239 -11.01043 -10.76005 -10.51860 -10.47367 -10.27179 -9.66654 -9.27813 -9.20054 -8.79651 -8.43836 -8.17829 -7.75869 -6.09749 -4.16626 2.15448 2.78292 3.18362 3.29993 3.31579 3.40394 3.92574 4.30634 4.66558 4.70786 4.83866 5.01628 5.05382 5.25275 5.36581 5.49370 5.51289 5.63654 5.70959 5.80806 5.85295 6.01737 6.03469 6.11754 6.30670 6.40534 6.55509 6.61101 6.70828 6.75419 6.91577 7.05622 7.27806 7.46335 7.61492 7.67894 7.81799 7.91635 8.32131 8.74067 8.86591 9.38735 9.44452 10.89716 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.005338 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.679661 B = 5244.213281 C = 5991.282971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 H 0.117 0.883 4 C 0.155 3.845 5 N -0.640 5.640 6 C 0.079 3.921 7 C 0.700 3.300 8 O -0.599 6.599 9 N -0.705 5.705 10 C 0.176 3.824 11 C 0.039 3.961 12 C -0.498 4.498 13 H 0.061 0.939 14 C 0.078 3.922 15 N -0.858 5.858 16 Si 0.881 3.119 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.284 1.284 20 C -0.195 4.195 21 C -0.212 4.212 22 C 0.491 3.509 23 O -0.518 6.518 24 O -0.515 6.515 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.396 0.604 34 H 0.021 0.979 35 H 0.109 0.891 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 -10.594 5.644 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 H 0.134 0.866 4 C 0.030 3.970 5 N -0.378 5.378 6 C -0.064 4.064 7 C 0.401 3.599 8 O -0.478 6.478 9 N -0.356 5.356 10 C 0.052 3.948 11 C 0.038 3.962 12 C -0.535 4.535 13 H 0.079 0.921 14 C -0.127 4.127 15 N -0.493 5.493 16 Si 0.709 3.291 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.210 1.210 20 C -0.233 4.233 21 C -0.249 4.249 22 C 0.333 3.667 23 O -0.406 6.406 24 O -0.327 6.327 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.230 0.770 34 H 0.039 0.961 35 H 0.127 0.873 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -4.175 -10.370 5.740 12.567 hybrid contribution -1.126 0.048 0.756 1.357 sum -5.301 -10.323 6.496 13.299 Atomic orbital electron populations 1.21827 0.91938 1.02393 1.03914 1.21580 0.98574 1.02533 0.89885 0.86555 1.20992 1.02215 0.92674 0.81127 1.46939 1.20860 1.40115 1.29925 1.21759 0.85458 1.01411 0.97811 1.15947 0.83778 0.79396 0.80776 1.90855 1.21391 1.72699 1.62895 1.45020 1.17098 1.39763 1.33747 1.20866 0.88537 0.88736 0.96641 1.19191 0.96021 0.96045 0.84951 1.20471 0.97909 1.36626 0.98538 0.92115 1.24911 0.95983 0.94459 0.97315 1.69949 1.26518 1.44132 1.08728 0.86713 0.84741 0.78528 0.79163 1.19660 1.20820 1.21039 1.22911 0.96018 0.95421 1.08999 1.22957 1.01948 0.96743 1.03277 1.23451 0.76486 0.82100 0.84633 1.90711 1.36015 1.26513 1.87329 1.84565 1.72186 1.59053 1.16858 0.92293 0.91424 0.90446 0.90190 0.88794 0.92192 0.90762 0.92160 0.76978 0.96103 0.87316 0.92769 0.90205 0.91519 0.91392 0.90652 0.73476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.50 37.16 0.32 -1.26 16 2 C -0.10 -1.41 3.03 -91.77 -0.28 -1.69 16 3 H 0.12 1.84 8.14 -51.93 -0.42 1.42 16 4 C 0.15 2.23 4.24 -4.04 -0.02 2.21 16 5 N -0.64 -10.11 2.70 -187.35 -0.51 -10.61 16 6 C 0.08 0.95 7.75 59.85 0.46 1.41 16 7 C 0.70 14.49 8.27 -86.93 -0.72 13.77 16 8 O -0.60 -14.68 15.88 5.29 0.08 -14.60 16 9 N -0.70 -14.77 5.14 -65.23 -0.34 -15.10 16 10 C 0.18 4.13 4.82 -4.04 -0.02 4.11 16 11 C 0.04 0.90 1.94 -155.66 -0.30 0.60 16 12 C -0.50 -12.46 8.40 -34.44 -0.29 -12.75 16 13 H 0.06 1.53 7.85 -52.49 -0.41 1.11 16 14 C 0.08 1.99 5.12 -17.82 -0.09 1.90 16 15 N -0.86 -23.01 10.89 55.43 0.60 -22.40 16 16 Si 0.88 19.64 29.56 -169.99 -5.03 14.62 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.19 -4.26 9.96 -26.69 -0.27 -4.53 16 21 C -0.21 -4.33 9.92 -26.69 -0.26 -4.59 16 22 C 0.49 6.40 7.63 36.00 0.27 6.68 16 23 O -0.52 -7.94 16.68 -18.75 -0.31 -8.25 16 24 O -0.52 -5.34 13.33 -39.24 -0.52 -5.87 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 27 H 0.08 0.90 6.16 -51.93 -0.32 0.58 16 28 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 29 H 0.09 1.60 7.17 -51.93 -0.37 1.23 16 30 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 31 H 0.07 0.67 7.52 -51.93 -0.39 0.27 16 32 H 0.06 0.74 7.52 -51.93 -0.39 0.35 16 33 H 0.40 7.72 6.50 -40.82 -0.27 7.45 16 34 H 0.02 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.11 2.95 6.02 -51.93 -0.31 2.64 16 36 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 37 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.41 2.35 9.10 45.56 0.41 2.76 16 LS Contribution 342.31 15.07 5.16 5.16 Total: -1.00 -31.37 342.31 -7.44 -38.81 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -5.39 Total: 12.40 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -1.19 Total: 5.86 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.24 Total: -48.12 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.75 Total: -28.72 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.37 -7.44 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589023203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.376 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds