Wall clock time and date at job start Tue Mar 31 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47072 * 2 1 4 4 C 1.53001 * 109.46893 * 240.00287 * 2 1 3 5 5 N 1.46506 * 109.47017 * 65.00057 * 4 2 1 6 6 C 1.46504 * 119.99919 * 269.99692 * 5 4 2 7 7 C 1.34776 * 119.99968 * 90.00323 * 5 4 2 8 8 O 1.21585 * 119.99971 * 4.94520 * 7 5 4 9 9 N 1.34770 * 120.00101 * 184.94893 * 7 5 4 10 10 C 1.46493 * 120.00226 * 185.04145 * 9 7 5 11 11 C 1.53006 * 109.47352 * 184.84578 * 10 9 7 12 12 C 1.50699 * 115.54918 * 54.16682 * 11 10 9 13 13 H 1.07998 * 120.00280 * 215.59445 * 12 11 10 14 14 C 1.37873 * 120.00160 * 35.31692 * 12 11 10 15 15 N 1.31522 * 119.99825 * 13.39565 * 14 12 11 16 16 Si 1.86799 * 120.00367 * 193.39383 * 14 12 11 17 17 H 1.48498 * 109.47002 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47097 * 119.99865 * 16 14 12 19 19 H 1.48501 * 109.47042 * 239.99978 * 16 14 12 20 20 C 1.52997 * 117.50131 * 199.83661 * 11 10 9 21 21 C 1.53002 * 117.49832 * 268.50052 * 11 10 9 22 22 C 1.50696 * 109.46934 * 120.00495 * 2 1 3 23 23 O 1.20831 * 119.99915 * 120.00069 * 22 2 1 24 24 O 1.34224 * 120.00011 * 299.99714 * 22 2 1 25 25 H 1.08995 * 109.47009 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46906 * 299.99841 * 1 2 3 27 27 H 1.09000 * 109.46697 * 59.99658 * 1 2 3 28 28 H 1.09004 * 109.47528 * 304.99965 * 4 2 1 29 29 H 1.08995 * 109.46983 * 185.00190 * 4 2 1 30 30 H 1.09000 * 109.46978 * 238.29349 * 6 5 4 31 31 H 1.09001 * 109.46952 * 358.28981 * 6 5 4 32 32 H 1.08994 * 109.46970 * 118.29100 * 6 5 4 33 33 H 0.97005 * 119.99852 * 5.04848 * 9 7 5 34 34 H 1.09001 * 109.47275 * 64.84736 * 10 9 7 35 35 H 1.09004 * 109.47121 * 304.84351 * 10 9 7 36 36 H 0.97003 * 119.99792 * 184.96471 * 15 14 12 37 37 H 1.08998 * 117.50117 * 215.00201 * 20 11 10 38 38 H 1.09006 * 117.49639 * 0.02572 * 20 11 10 39 39 H 1.09000 * 117.49654 * 359.96850 * 21 11 10 40 40 H 1.09000 * 117.50022 * 144.97502 * 21 11 10 41 41 H 0.96707 * 117.00259 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 0.3745 -0.2422 -3.1028 7 6 2.4715 0.9870 -2.9325 8 8 3.5701 1.1561 -2.4398 9 7 2.0728 1.7510 -3.9687 10 6 3.0022 2.7089 -4.5727 11 6 2.2704 3.5265 -5.6391 12 6 1.0142 4.2197 -5.1781 13 1 0.1719 4.3125 -5.8476 14 6 0.9381 4.7304 -3.8997 15 7 2.0285 4.8527 -3.1745 16 14 -0.7135 5.2486 -3.1977 17 1 -1.7767 5.0119 -4.2071 18 1 -1.0036 4.4543 -1.9769 19 1 -0.6732 6.6920 -2.8511 20 6 3.1224 4.2358 -6.6935 21 6 2.3011 3.0019 -7.0760 22 6 2.0324 -0.7105 1.2304 23 8 2.7270 -1.6929 1.1194 24 8 1.7081 -0.2520 2.4495 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -1.7198 -1.2953 29 1 3.1263 -0.7995 -1.2057 30 1 0.5555 -0.5265 -4.1394 31 1 -0.1322 -1.0570 -2.5857 32 1 -0.2505 0.6504 -3.0747 33 1 1.1704 1.6668 -4.3144 34 1 3.8308 2.1705 -5.0329 35 1 3.3864 3.3776 -3.8024 36 1 1.9667 5.1438 -2.2512 37 1 2.7743 5.2038 -7.0539 38 1 4.2042 4.1197 -6.6278 39 1 2.8431 2.0746 -7.2617 40 1 1.4126 3.1578 -7.6879 41 1 2.0542 -0.7408 3.2088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589023203.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:27 Heat of formation + Delta-G solvation = -117.103060 kcal Electronic energy + Delta-G solvation = -23543.055582 eV Core-core repulsion = 20037.165830 eV Total energy + Delta-G solvation = -3505.889752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.63499 -40.87774 -38.63983 -37.38851 -36.91086 -35.06887 -34.16051 -33.69064 -28.84073 -28.06967 -27.35325 -26.08623 -25.15098 -22.93429 -21.79905 -21.10949 -20.50831 -19.19423 -18.94665 -18.09188 -17.90629 -16.89224 -16.88242 -16.69112 -16.35343 -15.68251 -15.29257 -15.13285 -14.69472 -14.52763 -14.26720 -14.02501 -13.55938 -13.52135 -13.49842 -13.33699 -12.89123 -12.83584 -12.61452 -12.58105 -12.36926 -12.25007 -12.12618 -12.01606 -11.54289 -11.42567 -11.10757 -10.99773 -10.58311 -10.08954 -9.86998 -9.36306 -8.02117 -6.14549 1.12159 1.41212 1.47870 1.56602 1.63646 2.21238 2.35246 2.45517 3.01731 3.34955 3.63328 3.70530 3.79869 4.06039 4.28370 4.33663 4.36969 4.54801 4.56522 4.65884 4.76515 4.78293 4.81929 4.83264 4.92047 4.93682 4.99526 5.13180 5.23381 5.29934 5.53040 5.56099 5.61912 5.63570 5.91744 5.94376 6.09267 6.41294 6.85547 6.94101 7.24601 7.48787 7.78151 8.95060 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.005338 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.679661 B = 5244.213281 C = 5991.282971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 H 0.085 0.915 4 C 0.155 3.845 5 N -0.630 5.630 6 C 0.072 3.928 7 C 0.694 3.306 8 O -0.646 6.646 9 N -0.700 5.700 10 C 0.189 3.811 11 C 0.011 3.989 12 C -0.502 4.502 13 H 0.060 0.940 14 C 0.039 3.961 15 N -0.888 5.888 16 Si 0.938 3.062 17 H -0.260 1.260 18 H -0.279 1.279 19 H -0.294 1.294 20 C -0.201 4.201 21 C -0.181 4.181 22 C 0.500 3.500 23 O -0.543 6.543 24 O -0.509 6.509 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.058 0.942 33 H 0.403 0.597 34 H 0.018 0.982 35 H 0.069 0.931 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 -12.056 5.481 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 H 0.103 0.897 4 C 0.031 3.969 5 N -0.367 5.367 6 C -0.070 4.070 7 C 0.395 3.605 8 O -0.529 6.529 9 N -0.353 5.353 10 C 0.064 3.936 11 C 0.011 3.989 12 C -0.539 4.539 13 H 0.078 0.922 14 C -0.163 4.163 15 N -0.525 5.525 16 Si 0.764 3.236 17 H -0.184 1.184 18 H -0.204 1.204 19 H -0.221 1.221 20 C -0.240 4.240 21 C -0.218 4.218 22 C 0.343 3.657 23 O -0.434 6.434 24 O -0.323 6.323 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.239 0.761 34 H 0.036 0.964 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -6.560 -11.862 5.585 14.661 hybrid contribution -0.379 0.501 0.826 1.038 sum -6.939 -11.361 6.412 14.776 Atomic orbital electron populations 1.21814 0.89504 1.04117 1.03937 1.21464 1.00521 1.00535 0.89948 0.89675 1.21071 1.00643 0.94104 0.81083 1.46927 1.21370 1.38409 1.30017 1.22062 0.83550 1.02805 0.98602 1.16189 0.83787 0.80041 0.80496 1.90816 1.23745 1.74166 1.64184 1.44819 1.17043 1.39426 1.33969 1.20486 0.89046 0.88475 0.95606 1.19229 0.96106 0.97405 0.86203 1.20665 0.98374 1.36257 0.98613 0.92222 1.25517 0.98442 0.94621 0.97720 1.70122 1.28266 1.45582 1.08515 0.85828 0.81642 0.77389 0.78755 1.18427 1.20424 1.22075 1.22926 0.96495 0.96034 1.08514 1.22946 1.01751 0.96574 1.00526 1.23235 0.75812 0.81453 0.85234 1.90708 1.37116 1.27761 1.87812 1.84509 1.71820 1.59090 1.16838 0.89647 0.90959 0.90899 0.86843 0.92105 0.91302 0.86865 0.92293 0.76058 0.96401 0.91340 0.93522 0.90704 0.90946 0.89623 0.89537 0.70953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.50 71.98 0.61 -2.03 16 2 C -0.10 -2.71 3.03 -11.54 -0.04 -2.75 16 3 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 4 C 0.16 4.35 4.24 86.38 0.37 4.72 16 5 N -0.63 -19.34 2.70 -864.91 -2.33 -21.68 16 6 C 0.07 1.51 7.75 127.77 0.99 2.51 16 7 C 0.69 29.17 8.27 179.06 1.48 30.65 16 8 O -0.65 -33.08 15.88 -3.98 -0.06 -33.14 16 9 N -0.70 -29.49 5.14 -478.55 -2.46 -31.95 16 10 C 0.19 9.03 4.82 86.38 0.42 9.45 16 11 C 0.01 0.52 1.94 -52.93 -0.10 0.42 16 12 C -0.50 -24.81 8.40 25.60 0.22 -24.59 16 13 H 0.06 2.91 7.85 -2.91 -0.02 2.89 16 14 C 0.04 1.98 5.12 84.65 0.43 2.41 16 15 N -0.89 -48.81 10.89 21.45 0.23 -48.58 16 16 Si 0.94 40.07 29.56 68.60 2.03 42.10 16 17 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 18 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 20 C -0.20 -8.66 9.96 30.62 0.30 -8.35 16 21 C -0.18 -7.01 9.92 30.62 0.30 -6.71 16 22 C 0.50 12.47 7.63 71.23 0.54 13.01 16 23 O -0.54 -16.21 16.68 21.95 0.37 -15.84 16 24 O -0.51 -9.64 13.33 -51.36 -0.68 -10.33 16 25 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.35 8.11 -2.39 -0.02 1.33 16 27 H 0.07 1.50 6.16 -2.39 -0.01 1.48 16 28 H 0.11 2.42 7.91 -2.38 -0.02 2.40 16 29 H 0.06 2.13 7.17 -2.39 -0.02 2.11 16 30 H 0.07 1.37 8.11 -2.39 -0.02 1.35 16 31 H 0.11 1.53 7.52 -2.39 -0.02 1.51 16 32 H 0.06 1.30 7.52 -2.39 -0.02 1.28 16 33 H 0.40 15.42 6.50 -92.70 -0.60 14.82 16 34 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 35 H 0.07 3.88 6.02 -2.38 -0.01 3.87 16 36 H 0.26 13.83 8.32 -92.71 -0.77 13.06 16 37 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 39 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.43 4.03 9.10 -74.05 -0.67 3.36 16 Total: -1.00 -69.49 342.31 2.39 -67.10 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.23 Total: 33.58 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 5.53 Total: 18.74 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -4.56 Total: -102.21 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -0.38 Total: -59.31 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -69.49 2.39 -67.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589023203.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.003 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds