Wall clock time and date at job start Tue Mar 31 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47157 * 2 1 4 4 C 1.53003 * 109.46685 * 119.99302 * 2 1 3 5 5 N 1.46497 * 109.47512 * 295.00227 * 4 2 1 6 6 C 1.46504 * 119.99786 * 270.00443 * 5 4 2 7 7 C 1.34776 * 120.00062 * 89.99587 * 5 4 2 8 8 O 1.21585 * 120.00264 * 5.25374 * 7 5 4 9 9 N 1.34779 * 119.99671 * 185.25333 * 7 5 4 10 10 C 1.46505 * 119.99705 * 185.00407 * 9 7 5 11 11 C 1.52995 * 109.47058 * 185.14948 * 10 9 7 12 12 C 1.50700 * 115.55025 * 57.65610 * 11 10 9 13 13 H 1.07999 * 119.99978 * 269.40879 * 12 11 10 14 14 C 1.37882 * 120.00117 * 89.13760 * 12 11 10 15 15 N 1.31510 * 120.00297 * 171.45047 * 14 12 11 16 16 Si 1.86805 * 119.99716 * 351.44697 * 14 12 11 17 17 H 1.48503 * 109.47078 * 93.16401 * 16 14 12 18 18 H 1.48498 * 109.47316 * 213.16069 * 16 14 12 19 19 H 1.48497 * 109.47335 * 333.16328 * 16 14 12 20 20 C 1.53008 * 117.50026 * 203.32729 * 11 10 9 21 21 C 1.53003 * 117.50016 * 271.98524 * 11 10 9 22 22 C 1.50693 * 109.47237 * 239.99158 * 2 1 3 23 23 O 1.20827 * 120.00322 * 239.99830 * 22 2 1 24 24 O 1.34224 * 120.00027 * 60.00594 * 22 2 1 25 25 H 1.08997 * 109.47550 * 300.00721 * 1 2 3 26 26 H 1.09008 * 109.46481 * 60.00580 * 1 2 3 27 27 H 1.08999 * 109.47570 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47254 * 174.99630 * 4 2 1 29 29 H 1.09004 * 109.46957 * 54.99948 * 4 2 1 30 30 H 1.09002 * 109.46721 * 264.63743 * 6 5 4 31 31 H 1.08994 * 109.47665 * 24.63773 * 6 5 4 32 32 H 1.09005 * 109.47112 * 144.64577 * 6 5 4 33 33 H 0.96995 * 120.00470 * 5.00198 * 9 7 5 34 34 H 1.09003 * 109.47544 * 65.15018 * 10 9 7 35 35 H 1.09000 * 109.46976 * 305.14975 * 10 9 7 36 36 H 0.97000 * 119.99817 * 180.02562 * 15 14 12 37 37 H 1.08999 * 117.49532 * 215.00538 * 20 11 10 38 38 H 1.08995 * 117.49174 * 0.02562 * 20 11 10 39 39 H 1.08997 * 117.49530 * 359.97438 * 21 11 10 40 40 H 1.09002 * 117.49621 * 144.97536 * 21 11 10 41 41 H 0.96708 * 117.00457 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 1.6523 0.0355 2.4424 6 6 2.5426 1.0699 2.9751 7 6 0.4766 -0.2198 3.0499 8 8 -0.2184 -1.1409 2.6665 9 7 0.0713 0.5458 4.0824 10 6 -1.1514 0.2028 4.8130 11 6 -1.4528 1.2931 5.8431 12 6 -1.6126 2.6851 5.2883 13 1 -0.7549 3.3365 5.2087 14 6 -2.8530 3.1252 4.8771 15 7 -3.0284 4.3874 4.5520 16 14 -4.2842 1.9285 4.7818 17 1 -5.0442 1.9632 6.0572 18 1 -5.1791 2.3153 3.6617 19 1 -3.7671 0.5558 4.5508 20 6 -2.3159 0.9088 7.0466 21 6 -0.8156 1.1531 7.2271 22 6 2.0323 -0.7105 -1.2303 23 8 2.7270 -1.6929 -1.1193 24 8 1.7082 -0.2521 -2.4494 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1262 -0.7995 1.2058 29 1 1.6052 -1.7197 1.2954 30 1 3.1578 0.6462 3.7689 31 1 3.1849 1.4426 2.1773 32 1 1.9474 1.8906 3.3756 33 1 0.5891 1.3239 4.3418 34 1 -1.0146 -0.7509 5.3228 35 1 -1.9831 0.1245 4.1128 36 1 -3.9011 4.6970 4.2631 37 1 -2.9994 1.6629 7.4370 38 1 -2.6686 -0.1209 7.1046 39 1 -0.1821 0.2839 7.4037 40 1 -0.5117 2.0678 7.7361 41 1 2.0542 -0.7409 -3.2087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589023204.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:31 Heat of formation + Delta-G solvation = -91.622526 kcal Electronic energy + Delta-G solvation = -23279.898056 eV Core-core repulsion = 19775.113223 eV Total energy + Delta-G solvation = -3504.784834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66215 -39.73038 -37.29679 -36.39518 -35.65188 -33.95962 -32.67762 -32.13848 -27.52512 -26.94258 -25.91268 -25.09474 -23.88017 -21.70677 -20.67267 -19.49912 -19.14452 -18.25371 -17.69833 -16.96401 -16.44362 -15.91294 -15.65270 -15.41057 -14.90577 -14.29841 -13.85004 -13.72130 -13.63385 -13.28811 -13.04536 -12.78341 -12.67668 -12.46020 -12.15341 -12.10786 -11.92904 -11.68905 -11.36787 -11.18146 -11.12830 -10.66606 -10.54010 -10.52811 -10.15638 -9.81111 -9.62840 -9.18211 -8.70212 -8.62864 -8.56030 -8.10664 -6.18705 -4.21662 2.04975 2.63894 3.19454 3.28300 3.38762 3.44650 3.62860 4.35941 4.39149 4.60562 4.77820 4.93967 5.03732 5.11404 5.14927 5.28679 5.42594 5.56078 5.68221 5.76094 5.81617 5.87629 6.01457 6.02655 6.07331 6.25142 6.30175 6.38681 6.42632 6.44904 6.62945 6.71492 6.99920 7.08227 7.17080 7.29725 7.67273 7.72193 8.38203 8.45563 8.81139 9.04899 9.45811 10.92473 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.004542 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.845746 B = 6163.126721 C = 6675.534991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 H 0.109 0.891 4 C 0.151 3.849 5 N -0.637 5.637 6 C 0.079 3.921 7 C 0.702 3.298 8 O -0.596 6.596 9 N -0.716 5.716 10 C 0.170 3.830 11 C -0.016 4.016 12 C -0.490 4.490 13 H 0.076 0.924 14 C 0.083 3.917 15 N -0.893 5.893 16 Si 0.874 3.126 17 H -0.278 1.278 18 H -0.293 1.293 19 H -0.254 1.254 20 C -0.191 4.191 21 C -0.179 4.179 22 C 0.490 3.510 23 O -0.519 6.519 24 O -0.514 6.514 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.401 0.599 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.265 0.735 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.769 -6.556 -7.296 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 H 0.127 0.873 4 C 0.027 3.973 5 N -0.375 5.375 6 C -0.065 4.065 7 C 0.403 3.597 8 O -0.475 6.475 9 N -0.371 5.371 10 C 0.045 3.955 11 C -0.018 4.018 12 C -0.527 4.527 13 H 0.094 0.906 14 C -0.121 4.121 15 N -0.530 5.530 16 Si 0.702 3.298 17 H -0.204 1.204 18 H -0.220 1.220 19 H -0.178 1.178 20 C -0.229 4.229 21 C -0.216 4.216 22 C 0.332 3.668 23 O -0.407 6.407 24 O -0.326 6.326 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.237 0.763 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 10.143 -7.135 -7.217 14.348 hybrid contribution -0.369 -0.286 -0.493 0.679 sum 9.774 -7.421 -7.710 14.493 Atomic orbital electron populations 1.21738 0.90745 1.03595 1.03310 1.21546 0.99794 1.01189 0.89697 0.87311 1.21046 0.99737 0.95585 0.80966 1.46934 1.19746 1.41020 1.29844 1.21748 0.94274 0.91003 0.99463 1.15916 0.80913 0.82681 0.80180 1.90876 1.55525 1.33403 1.67699 1.45135 1.28371 1.30190 1.33356 1.21070 0.85352 0.95321 0.93717 1.19615 1.00365 0.95856 0.85935 1.20111 0.95758 0.94332 1.42504 0.90556 1.24932 0.98575 0.94623 0.93923 1.69902 1.24070 1.14329 1.44695 0.86940 0.82350 0.83004 0.77536 1.20438 1.21983 1.17826 1.22924 0.93969 1.00285 1.05705 1.22856 0.94553 1.01213 1.03002 1.23467 0.76318 0.82261 0.84714 1.90715 1.36326 1.26280 1.87361 1.84565 1.72248 1.58903 1.16837 0.90440 0.91944 0.91565 0.89852 0.88759 0.92643 0.91034 0.90843 0.76289 0.94283 0.91508 0.92506 0.89135 0.90774 0.90935 0.89443 0.73386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.97 37.16 0.30 -1.61 16 2 C -0.10 -1.20 3.03 -91.78 -0.28 -1.48 16 3 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.15 1.93 4.33 -4.04 -0.02 1.92 16 5 N -0.64 -8.87 2.76 -187.35 -0.52 -9.39 16 6 C 0.08 0.83 10.24 59.85 0.61 1.44 16 7 C 0.70 12.67 6.67 -86.92 -0.58 12.09 16 8 O -0.60 -12.61 14.54 5.29 0.08 -12.53 16 9 N -0.72 -13.25 5.25 -65.22 -0.34 -13.59 16 10 C 0.17 3.52 5.32 -4.04 -0.02 3.50 16 11 C -0.02 -0.35 0.93 -155.66 -0.14 -0.50 16 12 C -0.49 -12.51 8.94 -34.44 -0.31 -12.81 16 13 H 0.08 2.09 8.06 -52.49 -0.42 1.67 16 14 C 0.08 2.25 5.46 -17.82 -0.10 2.15 16 15 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 16 Si 0.87 21.12 25.21 -169.99 -4.28 16.84 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.25 -5.94 5.37 56.52 0.30 -5.64 16 20 C -0.19 -3.86 7.77 -26.69 -0.21 -4.06 16 21 C -0.18 -3.36 9.94 -26.69 -0.27 -3.63 16 22 C 0.49 5.66 7.63 36.00 0.27 5.94 16 23 O -0.52 -7.20 16.68 -18.75 -0.31 -7.51 16 24 O -0.51 -4.69 13.33 -39.24 -0.52 -5.21 16 25 H 0.08 1.29 6.16 -51.93 -0.32 0.97 16 26 H 0.06 0.78 8.11 -51.92 -0.42 0.36 16 27 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 28 H 0.08 0.91 7.89 -51.93 -0.41 0.50 16 29 H 0.09 1.42 7.36 -51.93 -0.38 1.04 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.58 8.03 -51.93 -0.42 0.16 16 32 H 0.07 0.82 6.38 -51.93 -0.33 0.49 16 33 H 0.40 6.88 5.98 -40.82 -0.24 6.64 16 34 H 0.04 0.78 8.11 -51.93 -0.42 0.35 16 35 H 0.07 1.55 6.05 -51.93 -0.31 1.24 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.09 1.93 7.47 -51.93 -0.39 1.54 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.41 1.89 9.10 45.56 0.41 2.30 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -32.39 335.32 -6.24 -38.63 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.42 Total: 9.92 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -0.74 Total: 2.93 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.09 Total: -48.12 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.76 Total: -25.25 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.28 Total: 16.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.39 -6.24 -38.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589023204.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.992 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds