Wall clock time and date at job start Tue Mar 31 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47157 * 2 1 4 4 C 1.53003 * 109.46685 * 119.99302 * 2 1 3 5 5 N 1.46497 * 109.47512 * 295.00227 * 4 2 1 6 6 C 1.46504 * 119.99786 * 270.00443 * 5 4 2 7 7 C 1.34776 * 120.00062 * 89.99587 * 5 4 2 8 8 O 1.21585 * 120.00264 * 5.25374 * 7 5 4 9 9 N 1.34779 * 119.99671 * 185.25333 * 7 5 4 10 10 C 1.46505 * 119.99705 * 185.00407 * 9 7 5 11 11 C 1.52995 * 109.47058 * 185.14948 * 10 9 7 12 12 C 1.50700 * 115.55025 * 57.65610 * 11 10 9 13 13 H 1.07999 * 119.99978 * 269.40879 * 12 11 10 14 14 C 1.37882 * 120.00117 * 89.13760 * 12 11 10 15 15 N 1.31510 * 120.00297 * 171.45047 * 14 12 11 16 16 Si 1.86805 * 119.99716 * 351.44697 * 14 12 11 17 17 H 1.48503 * 109.47078 * 93.16401 * 16 14 12 18 18 H 1.48498 * 109.47316 * 213.16069 * 16 14 12 19 19 H 1.48497 * 109.47335 * 333.16328 * 16 14 12 20 20 C 1.53008 * 117.50026 * 203.32729 * 11 10 9 21 21 C 1.53003 * 117.50016 * 271.98524 * 11 10 9 22 22 C 1.50693 * 109.47237 * 239.99158 * 2 1 3 23 23 O 1.20827 * 120.00322 * 239.99830 * 22 2 1 24 24 O 1.34224 * 120.00027 * 60.00594 * 22 2 1 25 25 H 1.08997 * 109.47550 * 300.00721 * 1 2 3 26 26 H 1.09008 * 109.46481 * 60.00580 * 1 2 3 27 27 H 1.08999 * 109.47570 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47254 * 174.99630 * 4 2 1 29 29 H 1.09004 * 109.46957 * 54.99948 * 4 2 1 30 30 H 1.09002 * 109.46721 * 264.63743 * 6 5 4 31 31 H 1.08994 * 109.47665 * 24.63773 * 6 5 4 32 32 H 1.09005 * 109.47112 * 144.64577 * 6 5 4 33 33 H 0.96995 * 120.00470 * 5.00198 * 9 7 5 34 34 H 1.09003 * 109.47544 * 65.15018 * 10 9 7 35 35 H 1.09000 * 109.46976 * 305.14975 * 10 9 7 36 36 H 0.97000 * 119.99817 * 180.02562 * 15 14 12 37 37 H 1.08999 * 117.49532 * 215.00538 * 20 11 10 38 38 H 1.08995 * 117.49174 * 0.02562 * 20 11 10 39 39 H 1.08997 * 117.49530 * 359.97438 * 21 11 10 40 40 H 1.09002 * 117.49621 * 144.97536 * 21 11 10 41 41 H 0.96708 * 117.00457 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 1.6523 0.0355 2.4424 6 6 2.5426 1.0699 2.9751 7 6 0.4766 -0.2198 3.0499 8 8 -0.2184 -1.1409 2.6665 9 7 0.0713 0.5458 4.0824 10 6 -1.1514 0.2028 4.8130 11 6 -1.4528 1.2931 5.8431 12 6 -1.6126 2.6851 5.2883 13 1 -0.7549 3.3365 5.2087 14 6 -2.8530 3.1252 4.8771 15 7 -3.0284 4.3874 4.5520 16 14 -4.2842 1.9285 4.7818 17 1 -5.0442 1.9632 6.0572 18 1 -5.1791 2.3153 3.6617 19 1 -3.7671 0.5558 4.5508 20 6 -2.3159 0.9088 7.0466 21 6 -0.8156 1.1531 7.2271 22 6 2.0323 -0.7105 -1.2303 23 8 2.7270 -1.6929 -1.1193 24 8 1.7082 -0.2521 -2.4494 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1262 -0.7995 1.2058 29 1 1.6052 -1.7197 1.2954 30 1 3.1578 0.6462 3.7689 31 1 3.1849 1.4426 2.1773 32 1 1.9474 1.8906 3.3756 33 1 0.5891 1.3239 4.3418 34 1 -1.0146 -0.7509 5.3228 35 1 -1.9831 0.1245 4.1128 36 1 -3.9011 4.6970 4.2631 37 1 -2.9994 1.6629 7.4370 38 1 -2.6686 -0.1209 7.1046 39 1 -0.1821 0.2839 7.4037 40 1 -0.5117 2.0678 7.7361 41 1 2.0542 -0.7409 -3.2087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589023204.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:30 Heat of formation + Delta-G solvation = -115.128352 kcal Electronic energy + Delta-G solvation = -23280.917345 eV Core-core repulsion = 19775.113223 eV Total energy + Delta-G solvation = -3505.804123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.68374 -40.96223 -38.88359 -37.33771 -36.81830 -35.32368 -34.22253 -33.86351 -28.81805 -28.17149 -27.49431 -26.54529 -24.99721 -23.28138 -21.71264 -21.16010 -20.46304 -19.35196 -18.88351 -18.19976 -17.97805 -17.06808 -16.97986 -16.79978 -16.44028 -15.73074 -15.14184 -15.01056 -14.82237 -14.70199 -14.47788 -14.32538 -13.99198 -13.74573 -13.62324 -13.16382 -13.08811 -13.05804 -12.55609 -12.52579 -12.39392 -12.18470 -12.13709 -11.94123 -11.62948 -11.52079 -11.18725 -10.90101 -10.63894 -10.35135 -9.98339 -9.44991 -8.28570 -6.31870 1.14166 1.34149 1.41237 1.50821 1.58938 2.12682 2.30835 2.38230 3.03143 3.07406 3.39346 3.61450 3.77519 4.07873 4.08645 4.30497 4.41391 4.42145 4.44088 4.45599 4.58164 4.63013 4.74358 4.80796 4.83954 4.90459 4.94002 4.96354 5.13517 5.21063 5.33078 5.52312 5.53238 5.58533 5.69716 5.74497 5.98729 6.31227 6.74882 6.96758 7.09723 7.37801 7.65575 8.85875 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.004542 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.845746 B = 6163.126721 C = 6675.534991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.097 4.097 3 H 0.132 0.868 4 C 0.152 3.848 5 N -0.630 5.630 6 C 0.073 3.927 7 C 0.698 3.302 8 O -0.632 6.632 9 N -0.717 5.717 10 C 0.180 3.820 11 C -0.039 4.039 12 C -0.474 4.474 13 H 0.048 0.952 14 C 0.033 3.967 15 N -0.941 5.941 16 Si 0.920 3.080 17 H -0.268 1.268 18 H -0.304 1.304 19 H -0.242 1.242 20 C -0.192 4.192 21 C -0.151 4.151 22 C 0.501 3.499 23 O -0.544 6.544 24 O -0.509 6.509 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.406 0.594 34 H 0.052 0.948 35 H 0.037 0.963 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.326 -7.543 -7.260 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.118 4.118 3 H 0.150 0.850 4 C 0.028 3.972 5 N -0.367 5.367 6 C -0.069 4.069 7 C 0.399 3.601 8 O -0.514 6.514 9 N -0.372 5.372 10 C 0.055 3.945 11 C -0.041 4.041 12 C -0.511 4.511 13 H 0.066 0.934 14 C -0.166 4.166 15 N -0.580 5.580 16 Si 0.746 3.254 17 H -0.193 1.193 18 H -0.231 1.231 19 H -0.166 1.166 20 C -0.230 4.230 21 C -0.188 4.188 22 C 0.344 3.656 23 O -0.434 6.434 24 O -0.322 6.322 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.244 0.756 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 11.748 -8.117 -7.196 15.990 hybrid contribution -0.754 0.055 -0.556 0.938 sum 10.994 -8.063 -7.752 15.684 Atomic orbital electron populations 1.21599 0.92538 1.02120 1.02396 1.21452 0.98064 1.02442 0.89830 0.85042 1.21100 1.00968 0.94265 0.80864 1.46957 1.18689 1.41351 1.29662 1.21999 0.93962 0.89849 1.01098 1.16076 0.81793 0.82178 0.80029 1.90847 1.57022 1.34910 1.68634 1.45037 1.27894 1.30613 1.33676 1.20787 0.85318 0.95496 0.92881 1.19467 1.03456 0.93957 0.87187 1.20284 0.94333 0.95795 1.40718 0.93358 1.25585 1.01048 0.95591 0.94362 1.70017 1.24540 1.16114 1.47348 0.86193 0.79886 0.81870 0.77437 1.19345 1.23106 1.16591 1.22984 0.94731 1.01191 1.04104 1.22882 0.94067 1.02289 0.99585 1.23182 0.75689 0.81525 0.85216 1.90716 1.37657 1.27241 1.87811 1.84508 1.71903 1.58973 1.16861 0.93413 0.90626 0.93353 0.87228 0.91392 0.91003 0.87883 0.91766 0.75610 0.92941 0.94508 0.92762 0.90501 0.88456 0.87902 0.89615 0.70897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 7.97 71.98 0.57 -3.01 16 2 C -0.10 -2.15 3.03 -11.54 -0.04 -2.18 16 3 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.15 3.67 4.33 86.38 0.37 4.04 16 5 N -0.63 -16.65 2.76 -864.90 -2.39 -19.03 16 6 C 0.07 1.35 10.24 127.77 1.31 2.66 16 7 C 0.70 24.91 6.67 179.05 1.19 26.11 16 8 O -0.63 -27.04 14.54 -3.98 -0.06 -27.10 16 9 N -0.72 -26.07 5.25 -478.53 -2.51 -28.58 16 10 C 0.18 7.30 5.32 86.38 0.46 7.76 16 11 C -0.04 -1.65 0.93 -52.93 -0.05 -1.70 16 12 C -0.47 -24.35 8.94 25.60 0.23 -24.12 16 13 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 14 C 0.03 1.79 5.46 84.66 0.46 2.26 16 15 N -0.94 -56.01 13.96 21.45 0.30 -55.71 16 16 Si 0.92 43.79 25.21 68.60 1.73 45.52 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 19 H -0.24 -11.01 5.37 99.48 0.53 -10.48 16 20 C -0.19 -7.31 7.77 30.62 0.24 -7.07 16 21 C -0.15 -5.26 9.94 30.62 0.30 -4.95 16 22 C 0.50 10.57 7.63 71.23 0.54 11.12 16 23 O -0.54 -14.19 16.68 21.96 0.37 -13.83 16 24 O -0.51 -7.99 13.33 -51.35 -0.68 -8.67 16 25 H 0.05 1.61 6.16 -2.39 -0.01 1.60 16 26 H 0.07 1.84 8.11 -2.38 -0.02 1.82 16 27 H 0.05 1.49 8.09 -2.39 -0.02 1.47 16 28 H 0.11 2.09 7.89 -2.39 -0.02 2.07 16 29 H 0.07 2.03 7.36 -2.39 -0.02 2.02 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 32 H 0.06 1.34 6.38 -2.38 -0.02 1.32 16 33 H 0.41 13.66 5.98 -92.71 -0.55 13.10 16 34 H 0.05 1.98 8.11 -2.39 -0.02 1.96 16 35 H 0.04 1.70 6.05 -2.39 -0.01 1.69 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.08 3.14 7.47 -2.39 -0.02 3.13 16 38 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.43 2.81 9.10 -74.05 -0.67 2.14 16 Total: -1.00 -71.53 335.32 2.00 -69.52 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.35 Total: 26.97 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 5.60 Total: 10.90 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -4.60 Total: -103.32 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -0.38 Total: -49.60 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.73 Total: 45.52 kcal Total: -71.53 2.00 -69.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589023204.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.604 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds