Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47075 * 2 1 4 4 C 1.50698 * 109.47248 * 120.00005 * 2 1 3 5 5 O 1.21280 * 119.99951 * 93.20605 * 4 2 1 6 6 N 1.34776 * 120.00202 * 273.20202 * 4 2 1 7 7 C 1.46498 * 120.00485 * 180.02562 * 6 4 2 8 8 C 1.50698 * 109.47453 * 180.02562 * 7 6 4 9 9 O 1.20821 * 119.99939 * 359.97438 * 8 7 6 10 10 O 1.34229 * 119.99716 * 180.02562 * 8 7 6 11 11 N 1.46898 * 109.47292 * 240.00447 * 2 1 3 12 12 C 1.46843 * 111.00120 * 52.95964 * 11 2 1 13 13 C 1.53044 * 109.52412 * 185.84243 * 12 11 2 14 14 C 1.53120 * 109.27730 * 300.82306 * 13 12 11 15 15 C 1.53114 * 109.16394 * 57.65082 * 14 13 12 16 16 H 1.09005 * 109.53195 * 62.30485 * 15 14 13 17 17 C 1.50698 * 109.50662 * 182.40640 * 15 14 13 18 18 H 1.08000 * 120.00295 * 119.53310 * 17 15 14 19 19 C 1.37881 * 119.99796 * 299.80347 * 17 15 14 20 20 N 1.31514 * 120.00045 * 179.97438 * 19 17 15 21 21 Si 1.86803 * 120.00042 * 0.02562 * 19 17 15 22 22 H 1.48498 * 109.46984 * 89.99651 * 21 19 17 23 23 H 1.48496 * 109.47160 * 209.99884 * 21 19 17 24 24 H 1.48496 * 109.46975 * 329.99776 * 21 19 17 25 25 C 1.46843 * 111.00219 * 177.17455 * 11 2 1 26 26 H 1.09001 * 109.47335 * 299.99940 * 1 2 3 27 27 H 1.09006 * 109.47403 * 60.00241 * 1 2 3 28 28 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 29 29 H 0.97002 * 119.99775 * 359.97438 * 6 4 2 30 30 H 1.09001 * 109.47071 * 300.00414 * 7 6 4 31 31 H 1.09002 * 109.46910 * 59.99721 * 7 6 4 32 32 H 0.96704 * 116.99917 * 179.97438 * 10 8 7 33 33 H 1.08996 * 109.46493 * 305.85536 * 12 11 2 34 34 H 1.08997 * 109.46420 * 65.82697 * 12 11 2 35 35 H 1.09002 * 109.50517 * 60.76103 * 13 12 11 36 36 H 1.09004 * 109.50306 * 180.87996 * 13 12 11 37 37 H 1.09007 * 109.52274 * 297.74719 * 14 13 12 38 38 H 1.09005 * 109.52336 * 177.55836 * 14 13 12 39 39 H 0.97001 * 120.00007 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.46767 * 54.14133 * 25 11 2 41 41 H 1.09003 * 109.45389 * 294.16724 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2898 -1.8946 1.1842 6 7 2.1955 -0.0297 2.3822 7 6 2.6844 -0.7201 3.5782 8 6 2.7763 0.2582 4.7208 9 8 2.4658 1.4137 4.5531 10 8 3.2041 -0.1540 5.9244 11 7 2.0196 -0.6924 -1.1995 12 6 1.4165 -0.1304 -2.4146 13 6 1.8346 -0.9660 -3.6267 14 6 3.3614 -0.9601 -3.7424 15 6 3.9659 -1.5049 -2.4455 16 1 3.6485 -2.5377 -2.3012 17 6 5.4695 -1.4475 -2.5281 18 1 6.0274 -0.8588 -1.8150 19 6 6.1326 -2.1420 -3.5176 20 7 7.4448 -2.0915 -3.5900 21 14 5.1670 -3.1535 -4.7561 22 1 4.8228 -2.3064 -5.9262 23 1 5.9905 -4.3053 -5.2040 24 1 3.9203 -3.6530 -4.1227 25 6 3.4860 -0.6537 -1.2677 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9899 0.9175 2.4190 30 1 1.9952 -1.5224 3.8418 31 1 3.6704 -1.1394 3.3781 32 1 3.2465 0.5099 6.6263 33 1 0.3307 -0.1443 -2.3211 34 1 1.7563 0.8968 -2.5471 35 1 1.4831 -1.9902 -3.5014 36 1 1.3994 -0.5394 -4.5305 37 1 3.7103 0.0594 -3.9068 38 1 3.6658 -1.5895 -4.5788 39 1 7.9112 -2.5798 -4.2864 40 1 3.9032 -1.0478 -0.3410 41 1 3.8160 0.3760 -1.4056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589396654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -116.167105 kcal Electronic energy + Delta-G solvation = -23223.045359 eV Core-core repulsion = 19717.196192 eV Total energy + Delta-G solvation = -3505.849166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84478 -39.89383 -38.04935 -36.64211 -34.60358 -34.43271 -32.29373 -30.43616 -29.97697 -28.54731 -25.24489 -24.28741 -22.98034 -21.79460 -20.90282 -20.16913 -18.89698 -18.46056 -17.68776 -16.75146 -16.61257 -16.39761 -15.89391 -15.41484 -14.94509 -14.39829 -14.22877 -14.01604 -13.66815 -13.18838 -13.06854 -12.94908 -12.80156 -12.46269 -12.28315 -12.09997 -11.99098 -11.79526 -11.47997 -11.09979 -11.00563 -10.96107 -10.43288 -10.07114 -9.93613 -9.65489 -9.58925 -9.30295 -9.06256 -8.86431 -8.45325 -7.83968 -6.01131 -3.99645 1.72064 2.28293 2.70165 3.17804 3.33145 3.44983 3.49779 4.23253 4.48710 4.61389 4.80925 4.94646 5.07745 5.12318 5.17031 5.29926 5.39779 5.53872 5.58281 5.68723 5.83658 5.98162 6.02063 6.09888 6.14245 6.17235 6.31602 6.33329 6.48283 6.66128 6.81836 6.88110 7.22932 7.30452 7.39319 7.42284 7.58253 7.73790 7.90472 8.26148 8.58192 9.01724 9.61972 11.12255 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.004442 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.991385 B = 6301.864405 C = 7294.705979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.057 0.943 4 C 0.524 3.476 5 O -0.502 6.502 6 N -0.733 5.733 7 C 0.128 3.872 8 C 0.480 3.520 9 O -0.514 6.514 10 O -0.509 6.509 11 N -0.520 5.520 12 C 0.061 3.939 13 C -0.119 4.119 14 C -0.123 4.123 15 C 0.022 3.978 16 H 0.038 0.962 17 C -0.511 4.511 18 H 0.071 0.929 19 C 0.070 3.930 20 N -0.904 5.904 21 Si 0.888 3.112 22 H -0.280 1.280 23 H -0.299 1.299 24 H -0.262 1.262 25 C 0.076 3.924 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.409 0.591 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.415 0.585 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.263 0.737 40 H 0.070 0.930 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.555 6.458 13.456 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.042 4.042 3 H 0.074 0.926 4 C 0.309 3.691 5 O -0.374 6.374 6 N -0.393 5.393 7 C 0.003 3.997 8 C 0.322 3.678 9 O -0.402 6.402 10 O -0.321 6.321 11 N -0.246 5.246 12 C -0.067 4.067 13 C -0.157 4.157 14 C -0.161 4.161 15 C 0.003 3.997 16 H 0.056 0.944 17 C -0.550 4.550 18 H 0.089 0.911 19 C -0.131 4.131 20 N -0.542 5.542 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.226 1.226 24 H -0.187 1.187 25 C -0.051 4.051 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.246 0.754 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.275 0.725 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.445 5.039 13.012 20.084 hybrid contribution -0.038 1.306 -0.232 1.327 sum -14.482 6.345 12.779 20.330 Atomic orbital electron populations 1.21857 0.92234 1.03608 1.02357 1.21460 0.96871 0.95809 0.90101 0.92558 1.20603 0.77264 0.87734 0.83468 1.90763 1.47555 1.15135 1.83913 1.45849 1.69873 1.14292 1.09246 1.20554 1.04263 0.93023 0.81900 1.23330 0.72518 0.88191 0.83726 1.90728 1.45956 1.20165 1.83381 1.84504 1.78985 1.47343 1.21247 1.61823 1.09331 1.53797 0.99611 1.22115 0.98558 0.96079 0.89931 1.21653 0.98135 1.00290 0.95603 1.22041 0.92645 1.01044 1.00345 1.19126 0.95682 0.95613 0.89260 0.94378 1.20986 0.89107 1.30171 1.14722 0.91117 1.24970 0.94679 0.95967 0.97462 1.69903 1.07185 1.42975 1.34183 0.86824 0.80153 0.79564 0.81648 1.20757 1.22645 1.18683 1.22156 0.83266 0.98441 1.01198 0.92062 0.90950 0.90915 0.75384 0.86964 0.86673 0.72496 0.91054 0.95249 0.91634 0.92629 0.92582 0.93497 0.92755 0.91207 0.95762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.72 37.15 0.32 -1.22 16 2 C 0.07 0.98 2.47 -68.87 -0.17 0.81 16 3 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.52 7.81 5.96 -10.99 -0.07 7.75 16 5 O -0.50 -9.56 15.76 5.56 0.09 -9.47 16 6 N -0.73 -8.42 5.53 -61.47 -0.34 -8.76 16 7 C 0.13 1.25 6.27 -5.20 -0.03 1.21 16 8 C 0.48 4.27 8.40 36.00 0.30 4.58 16 9 O -0.51 -5.83 16.43 -18.75 -0.31 -6.14 16 10 O -0.51 -3.30 13.42 -39.26 -0.53 -3.82 16 11 N -0.52 -9.19 4.22 -228.09 -0.96 -10.15 16 12 C 0.06 0.95 5.06 -3.83 -0.02 0.93 16 13 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 14 C -0.12 -2.70 4.74 -26.61 -0.13 -2.83 16 15 C 0.02 0.55 1.85 -91.69 -0.17 0.38 16 16 H 0.04 1.01 7.20 -51.93 -0.37 0.63 16 17 C -0.51 -14.74 9.14 -34.44 -0.31 -15.05 16 18 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 20 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 21 Si 0.89 22.65 24.36 -169.99 -4.14 18.51 16 22 H -0.28 -6.91 6.89 56.52 0.39 -6.52 16 23 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 24 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 25 C 0.08 1.61 4.41 -3.83 -0.02 1.60 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.69 6.19 -51.93 -0.32 0.37 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.41 4.17 7.44 -40.82 -0.30 3.86 16 30 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.42 0.91 9.10 45.56 0.41 1.32 16 33 H 0.07 0.92 5.85 -51.93 -0.30 0.61 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 38 H 0.05 1.09 3.37 -51.93 -0.17 0.92 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.07 1.58 6.46 -51.93 -0.34 1.25 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 326.09 15.07 4.91 4.91 Total: -1.00 -35.78 326.09 -6.28 -42.05 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.23 Total: 2.44 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.55 Total: -2.13 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.53 Total: -46.36 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.75 Total: -19.43 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.14 Total: 18.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.78 -6.28 -42.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589396654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.114 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds