Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47075 * 2 1 4 4 C 1.50698 * 109.47248 * 120.00005 * 2 1 3 5 5 O 1.21280 * 119.99951 * 93.20605 * 4 2 1 6 6 N 1.34776 * 120.00202 * 273.20202 * 4 2 1 7 7 C 1.46498 * 120.00485 * 180.02562 * 6 4 2 8 8 C 1.50698 * 109.47453 * 180.02562 * 7 6 4 9 9 O 1.20821 * 119.99939 * 359.97438 * 8 7 6 10 10 O 1.34229 * 119.99716 * 180.02562 * 8 7 6 11 11 N 1.46898 * 109.47292 * 240.00447 * 2 1 3 12 12 C 1.46843 * 111.00120 * 52.95964 * 11 2 1 13 13 C 1.53044 * 109.52412 * 185.84243 * 12 11 2 14 14 C 1.53120 * 109.27730 * 300.82306 * 13 12 11 15 15 C 1.53114 * 109.16394 * 57.65082 * 14 13 12 16 16 H 1.09005 * 109.53195 * 62.30485 * 15 14 13 17 17 C 1.50698 * 109.50662 * 182.40640 * 15 14 13 18 18 H 1.08000 * 120.00295 * 119.53310 * 17 15 14 19 19 C 1.37881 * 119.99796 * 299.80347 * 17 15 14 20 20 N 1.31514 * 120.00045 * 179.97438 * 19 17 15 21 21 Si 1.86803 * 120.00042 * 0.02562 * 19 17 15 22 22 H 1.48498 * 109.46984 * 89.99651 * 21 19 17 23 23 H 1.48496 * 109.47160 * 209.99884 * 21 19 17 24 24 H 1.48496 * 109.46975 * 329.99776 * 21 19 17 25 25 C 1.46843 * 111.00219 * 177.17455 * 11 2 1 26 26 H 1.09001 * 109.47335 * 299.99940 * 1 2 3 27 27 H 1.09006 * 109.47403 * 60.00241 * 1 2 3 28 28 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 29 29 H 0.97002 * 119.99775 * 359.97438 * 6 4 2 30 30 H 1.09001 * 109.47071 * 300.00414 * 7 6 4 31 31 H 1.09002 * 109.46910 * 59.99721 * 7 6 4 32 32 H 0.96704 * 116.99917 * 179.97438 * 10 8 7 33 33 H 1.08996 * 109.46493 * 305.85536 * 12 11 2 34 34 H 1.08997 * 109.46420 * 65.82697 * 12 11 2 35 35 H 1.09002 * 109.50517 * 60.76103 * 13 12 11 36 36 H 1.09004 * 109.50306 * 180.87996 * 13 12 11 37 37 H 1.09007 * 109.52274 * 297.74719 * 14 13 12 38 38 H 1.09005 * 109.52336 * 177.55836 * 14 13 12 39 39 H 0.97001 * 120.00007 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.46767 * 54.14133 * 25 11 2 41 41 H 1.09003 * 109.45389 * 294.16724 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.2898 -1.8946 1.1842 6 7 2.1955 -0.0297 2.3822 7 6 2.6844 -0.7201 3.5782 8 6 2.7763 0.2582 4.7208 9 8 2.4658 1.4137 4.5531 10 8 3.2041 -0.1540 5.9244 11 7 2.0196 -0.6924 -1.1995 12 6 1.4165 -0.1304 -2.4146 13 6 1.8346 -0.9660 -3.6267 14 6 3.3614 -0.9601 -3.7424 15 6 3.9659 -1.5049 -2.4455 16 1 3.6485 -2.5377 -2.3012 17 6 5.4695 -1.4475 -2.5281 18 1 6.0274 -0.8588 -1.8150 19 6 6.1326 -2.1420 -3.5176 20 7 7.4448 -2.0915 -3.5900 21 14 5.1670 -3.1535 -4.7561 22 1 4.8228 -2.3064 -5.9262 23 1 5.9905 -4.3053 -5.2040 24 1 3.9203 -3.6530 -4.1227 25 6 3.4860 -0.6537 -1.2677 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9899 0.9175 2.4190 30 1 1.9952 -1.5224 3.8418 31 1 3.6704 -1.1394 3.3781 32 1 3.2465 0.5099 6.6263 33 1 0.3307 -0.1443 -2.3211 34 1 1.7563 0.8968 -2.5471 35 1 1.4831 -1.9902 -3.5014 36 1 1.3994 -0.5394 -4.5305 37 1 3.7103 0.0594 -3.9068 38 1 3.6658 -1.5895 -4.5788 39 1 7.9112 -2.5798 -4.2864 40 1 3.9032 -1.0478 -0.3410 41 1 3.8160 0.3760 -1.4056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589396654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -146.271270 kcal Electronic energy + Delta-G solvation = -23224.350773 eV Core-core repulsion = 19717.196192 eV Total energy + Delta-G solvation = -3507.154581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.69810 -40.98607 -39.43795 -37.33537 -36.03729 -35.62945 -34.23129 -32.05663 -31.32600 -29.48215 -26.93701 -25.75765 -24.28778 -22.86198 -22.24148 -21.32585 -20.51886 -19.23483 -18.95019 -18.47036 -17.73162 -17.37680 -17.02911 -16.55724 -16.18160 -16.03407 -15.53306 -15.27784 -15.13349 -14.81033 -14.30247 -14.23228 -13.96876 -13.89662 -13.69344 -13.33209 -13.05026 -12.89525 -12.66619 -12.60012 -12.47818 -12.11415 -11.91787 -11.86753 -11.73473 -11.40523 -11.09266 -10.89383 -10.70508 -10.59295 -10.32070 -9.18257 -8.31340 -6.34640 1.00096 1.28344 1.36340 1.47559 1.47911 1.59480 2.32808 2.32866 2.97057 3.04674 3.65980 3.99308 4.04988 4.10285 4.13936 4.19148 4.21122 4.31783 4.33069 4.45944 4.58965 4.70790 4.78073 4.83712 4.91528 4.94577 5.08167 5.16089 5.18001 5.25854 5.30015 5.45761 5.46542 5.62465 5.74588 6.07762 6.16655 6.32733 6.43892 6.71789 6.84297 7.17285 7.30910 8.85749 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.004442 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.991385 B = 6301.864405 C = 7294.705979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.065 3.935 3 H 0.075 0.925 4 C 0.521 3.479 5 O -0.553 6.553 6 N -0.720 5.720 7 C 0.121 3.879 8 C 0.495 3.505 9 O -0.539 6.539 10 O -0.503 6.503 11 N -0.534 5.534 12 C 0.059 3.941 13 C -0.115 4.115 14 C -0.122 4.122 15 C 0.022 3.978 16 H 0.016 0.984 17 C -0.520 4.520 18 H 0.029 0.971 19 C 0.014 3.986 20 N -0.951 5.951 21 Si 0.953 3.047 22 H -0.260 1.260 23 H -0.299 1.299 24 H -0.253 1.253 25 C 0.092 3.908 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.417 0.583 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.436 0.564 33 H 0.110 0.890 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.034 0.966 39 H 0.266 0.734 40 H 0.044 0.956 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.717 7.432 13.310 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 H 0.093 0.907 4 C 0.307 3.693 5 O -0.429 6.429 6 N -0.378 5.378 7 C -0.003 4.003 8 C 0.338 3.662 9 O -0.429 6.429 10 O -0.316 6.316 11 N -0.260 5.260 12 C -0.067 4.067 13 C -0.153 4.153 14 C -0.160 4.160 15 C 0.003 3.997 16 H 0.034 0.966 17 C -0.558 4.558 18 H 0.047 0.953 19 C -0.183 4.183 20 N -0.591 5.591 21 Si 0.780 3.220 22 H -0.186 1.186 23 H -0.227 1.227 24 H -0.177 1.177 25 C -0.036 4.036 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.256 0.744 30 H 0.143 0.857 31 H 0.126 0.874 32 H 0.299 0.701 33 H 0.128 0.872 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -17.629 6.066 12.921 22.683 hybrid contribution 1.028 1.048 -0.003 1.468 sum -16.601 7.114 12.918 22.206 Atomic orbital electron populations 1.21862 0.89189 1.03533 1.04667 1.21666 0.99137 0.95895 0.87948 0.90695 1.20903 0.76629 0.87215 0.84520 1.90741 1.50090 1.17251 1.84773 1.45712 1.68517 1.14572 1.09027 1.20646 1.04234 0.93614 0.81832 1.22961 0.71949 0.87265 0.84073 1.90725 1.47336 1.20978 1.83903 1.84457 1.78116 1.48103 1.20963 1.61692 1.06556 1.55755 1.02000 1.22254 1.00604 0.95903 0.87983 1.21651 0.94403 1.00890 0.98318 1.21919 0.96164 1.00177 0.97691 1.19016 0.92831 0.95278 0.92573 0.96630 1.21315 0.91771 1.29205 1.13538 0.95277 1.25839 0.95546 0.97254 0.99667 1.70049 1.09071 1.44525 1.35473 0.85773 0.78779 0.77949 0.79524 1.18611 1.22672 1.17731 1.21733 0.86311 0.97106 0.98421 0.89486 0.88941 0.92118 0.74382 0.85725 0.87364 0.70076 0.87180 0.94163 0.92245 0.89135 0.92826 0.94765 0.92531 0.93791 0.96147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.72 71.98 0.63 -1.77 16 2 C 0.07 1.68 2.47 44.17 0.11 1.79 16 3 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 4 C 0.52 15.23 5.96 87.66 0.52 15.75 16 5 O -0.55 -21.43 15.76 -3.03 -0.05 -21.47 16 6 N -0.72 -15.86 5.53 -466.80 -2.58 -18.44 16 7 C 0.12 2.30 6.27 85.63 0.54 2.84 16 8 C 0.49 8.15 8.40 71.24 0.60 8.75 16 9 O -0.54 -11.45 16.43 21.98 0.36 -11.09 16 10 O -0.50 -5.59 13.42 -51.41 -0.69 -6.28 16 11 N -0.53 -18.02 4.22 -875.54 -3.69 -21.71 16 12 C 0.06 1.63 5.06 86.33 0.44 2.06 16 13 C -0.11 -3.67 6.09 30.65 0.19 -3.48 16 14 C -0.12 -5.19 4.74 30.67 0.15 -5.04 16 15 C 0.02 1.11 1.85 -11.49 -0.02 1.09 16 16 H 0.02 0.84 7.20 -2.38 -0.02 0.82 16 17 C -0.52 -31.29 9.14 25.60 0.23 -31.06 16 18 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 19 C 0.01 0.83 5.45 84.66 0.46 1.30 16 20 N -0.95 -61.49 13.96 21.45 0.30 -61.19 16 21 Si 0.95 47.35 24.36 68.60 1.67 49.02 16 22 H -0.26 -12.03 6.89 99.48 0.69 -11.34 16 23 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.25 -12.09 6.53 99.48 0.65 -11.44 16 25 C 0.09 3.96 4.41 86.33 0.38 4.35 16 26 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.28 6.19 -2.38 -0.01 1.27 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.42 7.82 7.44 -92.71 -0.69 7.13 16 30 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.44 0.95 9.10 -74.05 -0.67 0.28 16 33 H 0.11 2.24 5.85 -2.39 -0.01 2.22 16 34 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.03 1.53 3.37 -2.38 -0.01 1.52 16 39 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 40 H 0.04 2.08 6.46 -2.39 -0.02 2.07 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -81.42 326.09 -0.84 -82.26 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -0.38 Total: 12.35 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 4.22 Total: -3.43 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -5.97 Total: -101.35 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.38 Total: -38.85 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.67 Total: 49.02 kcal Total: -81.42 -0.84 -82.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589396654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.009 kcal (2) G-P(sol) polarization free energy of solvation -81.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds