Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46900 * 2 1 4 4 C 1.50699 * 109.46695 * 119.99496 * 2 1 3 5 5 O 1.21279 * 120.00033 * 105.86897 * 4 2 1 6 6 N 1.34783 * 120.00132 * 285.86371 * 4 2 1 7 7 C 1.46492 * 119.99962 * 180.02562 * 6 4 2 8 8 C 1.50706 * 109.47117 * 179.97438 * 7 6 4 9 9 O 1.20823 * 119.99977 * 0.02562 * 8 7 6 10 10 O 1.34232 * 120.00136 * 179.97438 * 8 7 6 11 11 N 1.46897 * 109.47203 * 239.99570 * 2 1 3 12 12 C 1.46842 * 111.00168 * 76.43806 * 11 2 1 13 13 C 1.53040 * 109.52318 * 174.15885 * 12 11 2 14 14 C 1.53119 * 109.27634 * 59.17890 * 13 12 11 15 15 C 1.53116 * 109.16261 * 302.34355 * 14 13 12 16 16 H 1.09000 * 109.53383 * 297.69689 * 15 14 13 17 17 C 1.50704 * 109.50602 * 177.59980 * 15 14 13 18 18 H 1.07999 * 119.99481 * 245.59807 * 17 15 14 19 19 C 1.37877 * 119.99695 * 65.59840 * 17 15 14 20 20 N 1.31506 * 120.00337 * 6.48511 * 19 17 15 21 21 Si 1.86796 * 119.99379 * 186.48537 * 19 17 15 22 22 H 1.48500 * 109.47327 * 94.72372 * 21 19 17 23 23 H 1.48509 * 109.47267 * 214.72284 * 21 19 17 24 24 H 1.48500 * 109.47686 * 334.71950 * 21 19 17 25 25 C 1.46844 * 110.99936 * 312.22399 * 11 2 1 26 26 H 1.08998 * 109.46731 * 60.00558 * 1 2 3 27 27 H 1.08997 * 109.47512 * 300.00547 * 1 2 3 28 28 H 1.08997 * 109.46900 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99842 * 0.02562 * 6 4 2 30 30 H 1.09004 * 109.47416 * 299.99980 * 7 6 4 31 31 H 1.09000 * 109.47616 * 59.99582 * 7 6 4 32 32 H 0.96692 * 116.99865 * 179.97438 * 10 8 7 33 33 H 1.09003 * 109.46085 * 294.17410 * 12 11 2 34 34 H 1.08990 * 109.46576 * 54.14119 * 12 11 2 35 35 H 1.08997 * 109.50426 * 299.23586 * 13 12 11 36 36 H 1.08999 * 109.53424 * 179.13279 * 13 12 11 37 37 H 1.09002 * 109.51784 * 182.43690 * 14 13 12 38 38 H 1.08999 * 109.52345 * 62.25055 * 14 13 12 39 39 H 0.97006 * 120.00178 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.46779 * 305.85443 * 25 11 2 41 41 H 1.08994 * 109.46374 * 65.82741 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.5051 -1.8233 1.1378 6 7 1.9560 -0.1087 2.4343 7 6 2.4448 -0.7990 3.6303 8 6 2.2465 0.0834 4.8359 9 8 1.7476 1.1765 4.7089 10 8 2.6231 -0.3455 6.0508 11 7 2.0197 -0.6926 -1.1993 12 6 1.8921 0.1598 -2.3882 13 6 2.5424 -0.5341 -3.5873 14 6 1.8547 -1.8813 -3.8258 15 6 1.9599 -2.7310 -2.5564 16 1 3.0090 -2.9289 -2.3362 17 6 1.2344 -4.0357 -2.7627 18 1 0.3513 -4.2600 -2.1828 19 6 1.6981 -4.9429 -3.6917 20 7 2.8411 -4.7293 -4.3058 21 14 0.7024 -6.4755 -4.0780 22 1 -0.1527 -6.2240 -5.2658 23 1 1.6232 -7.6057 -4.3613 24 1 -0.1548 -6.8154 -2.9140 25 6 1.3265 -1.9734 -1.3873 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.5776 0.7813 2.5085 30 1 1.8915 -1.7285 3.7650 31 1 3.5055 -1.0213 3.5138 32 1 2.4762 0.2558 6.7936 33 1 0.8368 0.3346 -2.5982 34 1 2.3888 1.1128 -2.2069 35 1 3.6007 -0.6968 -3.3836 36 1 2.4342 0.0915 -4.4732 37 1 2.3431 -2.3983 -4.6518 38 1 0.8048 -1.7165 -4.0678 39 1 3.1675 -5.3677 -4.9592 40 1 1.4126 -2.5697 -0.4790 41 1 0.2740 -1.7886 -1.6019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589396655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = -124.126978 kcal Electronic energy + Delta-G solvation = -23136.499346 eV Core-core repulsion = 19630.305014 eV Total energy + Delta-G solvation = -3506.194332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84311 -39.85204 -37.86731 -36.64637 -34.55553 -34.17871 -32.25836 -29.80017 -29.58518 -28.18065 -24.89913 -24.79511 -22.61900 -21.61538 -21.23315 -20.22056 -18.49229 -18.33725 -17.52836 -16.61288 -16.48848 -16.08357 -15.64380 -15.04116 -14.84781 -14.31871 -14.06717 -14.03181 -13.53974 -13.23572 -13.08090 -12.79122 -12.42915 -12.32275 -12.06911 -11.99979 -11.65821 -11.53869 -11.28912 -11.10672 -10.87150 -10.61138 -10.58445 -10.07316 -9.86397 -9.65385 -9.31603 -9.24333 -8.83440 -8.59342 -8.21348 -7.60537 -5.89942 -3.91810 1.70611 2.29356 2.80012 3.21148 3.36757 3.43717 3.47170 4.42434 4.57690 4.68100 4.86063 4.97647 5.12623 5.17203 5.22203 5.42038 5.61625 5.67542 5.75352 5.87521 6.00309 6.03586 6.16832 6.20432 6.29317 6.48502 6.67283 6.72793 6.78449 7.12399 7.26457 7.32194 7.37883 7.46818 7.68715 7.83676 7.85377 8.14538 8.25770 8.36010 8.59199 9.12972 9.70749 11.19126 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.003960 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.017325 B = 7069.060700 C = 7866.584457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.097 0.903 4 C 0.524 3.476 5 O -0.500 6.500 6 N -0.734 5.734 7 C 0.128 3.872 8 C 0.480 3.520 9 O -0.515 6.515 10 O -0.510 6.510 11 N -0.518 5.518 12 C 0.064 3.936 13 C -0.116 4.116 14 C -0.107 4.107 15 C 0.055 3.945 16 H 0.041 0.959 17 C -0.511 4.511 18 H 0.052 0.948 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.886 3.114 22 H -0.283 1.283 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.062 3.938 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.408 0.592 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.415 0.585 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.031 0.969 39 H 0.258 0.742 40 H 0.080 0.920 41 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 12.995 15.095 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.045 4.045 3 H 0.115 0.885 4 C 0.309 3.691 5 O -0.371 6.371 6 N -0.394 5.394 7 C 0.003 3.997 8 C 0.322 3.678 9 O -0.403 6.403 10 O -0.321 6.321 11 N -0.242 5.242 12 C -0.064 4.064 13 C -0.154 4.154 14 C -0.145 4.145 15 C 0.037 3.963 16 H 0.059 0.941 17 C -0.550 4.550 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.064 4.064 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.245 0.755 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.274 0.726 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -1.212 11.996 14.587 18.926 hybrid contribution -1.661 0.228 0.237 1.694 sum -2.874 12.224 14.825 19.429 Atomic orbital electron populations 1.22392 0.95392 1.03741 1.02478 1.21520 0.94144 0.98138 0.90649 0.88533 1.20731 0.78281 0.86626 0.83426 1.90768 1.42266 1.18799 1.85271 1.45846 1.66212 1.21723 1.05658 1.20539 1.03754 0.94614 0.80771 1.23379 0.73700 0.85910 0.84798 1.90725 1.41090 1.22429 1.86054 1.84507 1.77798 1.51864 1.17955 1.61946 1.57144 1.04713 1.00373 1.22061 0.98255 0.95144 0.90940 1.21653 1.00766 0.98250 0.94754 1.21620 0.97535 0.92922 1.02436 1.18646 0.97531 0.91820 0.88346 0.94084 1.21125 1.11462 1.01682 1.20710 0.92976 1.24918 0.94704 0.97673 0.96456 1.69964 1.18769 1.36500 1.27420 0.86675 0.80151 0.83156 0.78562 1.20898 1.21332 1.19978 1.22515 0.93984 0.87783 1.02091 0.91306 0.92226 0.90933 0.75497 0.86956 0.86888 0.72552 0.95535 0.92368 0.91895 0.93416 0.90685 0.95023 0.93194 0.90223 0.96398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 8.30 37.16 0.31 -2.01 16 2 C 0.07 0.99 2.70 -68.87 -0.19 0.80 16 3 H 0.10 1.15 7.86 -51.93 -0.41 0.74 16 4 C 0.52 7.95 6.96 -10.98 -0.08 7.87 16 5 O -0.50 -9.86 14.32 5.56 0.08 -9.78 16 6 N -0.73 -8.25 5.53 -61.47 -0.34 -8.59 16 7 C 0.13 1.22 6.27 -5.20 -0.03 1.19 16 8 C 0.48 4.08 8.40 36.01 0.30 4.38 16 9 O -0.51 -5.60 16.43 -18.75 -0.31 -5.91 16 10 O -0.51 -3.11 13.42 -39.26 -0.53 -3.63 16 11 N -0.52 -9.67 4.34 -228.09 -0.99 -10.66 16 12 C 0.06 1.08 5.22 -3.84 -0.02 1.06 16 13 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 14 C -0.11 -2.54 5.09 -26.61 -0.14 -2.68 16 15 C 0.06 1.44 2.13 -91.69 -0.20 1.25 16 16 H 0.04 1.22 8.11 -51.93 -0.42 0.80 16 17 C -0.51 -14.51 8.49 -34.44 -0.29 -14.80 16 18 H 0.05 1.47 7.76 -52.49 -0.41 1.06 16 19 C 0.06 1.82 5.26 -17.82 -0.09 1.73 16 20 N -0.89 -26.22 12.04 55.43 0.67 -25.56 16 21 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.06 1.38 3.39 -3.83 -0.01 1.37 16 26 H 0.07 0.85 7.09 -51.93 -0.37 0.49 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.08 6.45 -51.93 -0.33 0.75 16 29 H 0.41 3.98 7.44 -40.82 -0.30 3.68 16 30 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.42 0.74 9.10 45.56 0.41 1.16 16 33 H 0.03 0.43 7.13 -51.93 -0.37 0.06 16 34 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.99 6.86 -51.93 -0.36 1.63 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.08 1.90 5.92 -51.93 -0.31 1.59 16 41 H 0.02 0.39 6.59 -51.93 -0.34 0.04 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -34.32 330.66 -7.34 -41.66 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.29 Total: 2.95 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -0.60 Total: -2.27 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.66 Total: -44.81 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.76 Total: -19.32 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.32 -7.34 -41.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589396655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.465 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds