Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46900 * 2 1 4 4 C 1.50699 * 109.46695 * 119.99496 * 2 1 3 5 5 O 1.21279 * 120.00033 * 105.86897 * 4 2 1 6 6 N 1.34783 * 120.00132 * 285.86371 * 4 2 1 7 7 C 1.46492 * 119.99962 * 180.02562 * 6 4 2 8 8 C 1.50706 * 109.47117 * 179.97438 * 7 6 4 9 9 O 1.20823 * 119.99977 * 0.02562 * 8 7 6 10 10 O 1.34232 * 120.00136 * 179.97438 * 8 7 6 11 11 N 1.46897 * 109.47203 * 239.99570 * 2 1 3 12 12 C 1.46842 * 111.00168 * 76.43806 * 11 2 1 13 13 C 1.53040 * 109.52318 * 174.15885 * 12 11 2 14 14 C 1.53119 * 109.27634 * 59.17890 * 13 12 11 15 15 C 1.53116 * 109.16261 * 302.34355 * 14 13 12 16 16 H 1.09000 * 109.53383 * 297.69689 * 15 14 13 17 17 C 1.50704 * 109.50602 * 177.59980 * 15 14 13 18 18 H 1.07999 * 119.99481 * 245.59807 * 17 15 14 19 19 C 1.37877 * 119.99695 * 65.59840 * 17 15 14 20 20 N 1.31506 * 120.00337 * 6.48511 * 19 17 15 21 21 Si 1.86796 * 119.99379 * 186.48537 * 19 17 15 22 22 H 1.48500 * 109.47327 * 94.72372 * 21 19 17 23 23 H 1.48509 * 109.47267 * 214.72284 * 21 19 17 24 24 H 1.48500 * 109.47686 * 334.71950 * 21 19 17 25 25 C 1.46844 * 110.99936 * 312.22399 * 11 2 1 26 26 H 1.08998 * 109.46731 * 60.00558 * 1 2 3 27 27 H 1.08997 * 109.47512 * 300.00547 * 1 2 3 28 28 H 1.08997 * 109.46900 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99842 * 0.02562 * 6 4 2 30 30 H 1.09004 * 109.47416 * 299.99980 * 7 6 4 31 31 H 1.09000 * 109.47616 * 59.99582 * 7 6 4 32 32 H 0.96692 * 116.99865 * 179.97438 * 10 8 7 33 33 H 1.09003 * 109.46085 * 294.17410 * 12 11 2 34 34 H 1.08990 * 109.46576 * 54.14119 * 12 11 2 35 35 H 1.08997 * 109.50426 * 299.23586 * 13 12 11 36 36 H 1.08999 * 109.53424 * 179.13279 * 13 12 11 37 37 H 1.09002 * 109.51784 * 182.43690 * 14 13 12 38 38 H 1.08999 * 109.52345 * 62.25055 * 14 13 12 39 39 H 0.97006 * 120.00178 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.46779 * 305.85443 * 25 11 2 41 41 H 1.08994 * 109.46374 * 65.82741 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.5051 -1.8233 1.1378 6 7 1.9560 -0.1087 2.4343 7 6 2.4448 -0.7990 3.6303 8 6 2.2465 0.0834 4.8359 9 8 1.7476 1.1765 4.7089 10 8 2.6231 -0.3455 6.0508 11 7 2.0197 -0.6926 -1.1993 12 6 1.8921 0.1598 -2.3882 13 6 2.5424 -0.5341 -3.5873 14 6 1.8547 -1.8813 -3.8258 15 6 1.9599 -2.7310 -2.5564 16 1 3.0090 -2.9289 -2.3362 17 6 1.2344 -4.0357 -2.7627 18 1 0.3513 -4.2600 -2.1828 19 6 1.6981 -4.9429 -3.6917 20 7 2.8411 -4.7293 -4.3058 21 14 0.7024 -6.4755 -4.0780 22 1 -0.1527 -6.2240 -5.2658 23 1 1.6232 -7.6057 -4.3613 24 1 -0.1548 -6.8154 -2.9140 25 6 1.3265 -1.9734 -1.3873 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.5776 0.7813 2.5085 30 1 1.8915 -1.7285 3.7650 31 1 3.5055 -1.0213 3.5138 32 1 2.4762 0.2558 6.7936 33 1 0.8368 0.3346 -2.5982 34 1 2.3888 1.1128 -2.2069 35 1 3.6007 -0.6968 -3.3836 36 1 2.4342 0.0915 -4.4732 37 1 2.3431 -2.3983 -4.6518 38 1 0.8048 -1.7165 -4.0678 39 1 3.1675 -5.3677 -4.9592 40 1 1.4126 -2.5697 -0.4790 41 1 0.2740 -1.7886 -1.6019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589396655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = -151.604779 kcal Electronic energy + Delta-G solvation = -23137.690873 eV Core-core repulsion = 19630.305014 eV Total energy + Delta-G solvation = -3507.385859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66833 -40.97330 -39.30358 -37.30155 -35.89733 -35.60311 -34.07545 -31.63773 -30.87297 -29.16908 -26.92006 -26.05857 -23.88772 -23.12390 -22.41785 -21.37138 -20.06915 -19.14763 -18.67825 -18.21368 -17.43968 -17.32048 -16.65954 -16.61314 -16.03114 -15.94325 -15.49072 -15.24272 -14.80726 -14.71696 -14.29290 -14.02975 -13.91329 -13.83323 -13.34849 -13.22510 -12.95378 -12.78660 -12.73747 -12.63323 -12.50078 -12.28637 -11.84730 -11.82489 -11.60079 -11.33369 -11.07928 -10.71061 -10.44577 -10.37964 -10.24840 -9.03546 -8.09153 -6.19262 1.03390 1.40032 1.40600 1.51605 1.53810 1.64320 2.36637 2.44377 3.16768 3.20396 3.73839 4.02106 4.12136 4.17146 4.22303 4.29870 4.33575 4.37501 4.46298 4.65274 4.69946 4.72234 4.88141 4.93358 5.03369 5.13138 5.19785 5.24238 5.33756 5.44554 5.48805 5.50311 5.65095 5.97430 6.14980 6.20542 6.27451 6.50269 6.53282 6.87586 6.94532 7.25694 7.47266 8.99404 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.003960 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.017325 B = 7069.060700 C = 7866.584457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.066 3.934 3 H 0.135 0.865 4 C 0.523 3.477 5 O -0.556 6.556 6 N -0.717 5.717 7 C 0.122 3.878 8 C 0.495 3.505 9 O -0.538 6.538 10 O -0.504 6.504 11 N -0.538 5.538 12 C 0.066 3.934 13 C -0.111 4.111 14 C -0.099 4.099 15 C 0.053 3.947 16 H -0.011 1.011 17 C -0.535 4.535 18 H 0.047 0.953 19 C 0.013 3.987 20 N -0.918 5.918 21 Si 0.953 3.047 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.086 3.914 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.419 0.581 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.436 0.564 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.032 0.968 39 H 0.260 0.740 40 H 0.054 0.946 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.366 15.062 16.162 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.046 4.046 3 H 0.153 0.847 4 C 0.310 3.690 5 O -0.432 6.432 6 N -0.375 5.375 7 C -0.003 4.003 8 C 0.338 3.662 9 O -0.428 6.428 10 O -0.317 6.317 11 N -0.262 5.262 12 C -0.061 4.061 13 C -0.149 4.149 14 C -0.137 4.137 15 C 0.034 3.966 16 H 0.007 0.993 17 C -0.573 4.573 18 H 0.066 0.934 19 C -0.185 4.185 20 N -0.558 5.558 21 Si 0.778 3.222 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.042 4.042 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.258 0.742 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.299 0.701 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.467 14.118 15.715 21.269 hybrid contribution -1.219 -0.398 0.024 1.282 sum -3.686 13.720 15.739 21.203 Atomic orbital electron populations 1.22328 0.93767 1.02580 1.04582 1.21706 0.95415 0.99126 0.88337 0.84710 1.20937 0.77534 0.85928 0.84650 1.90759 1.45099 1.21194 1.86139 1.45625 1.64886 1.21843 1.05170 1.20624 1.03951 0.94921 0.80797 1.22949 0.73094 0.85014 0.85103 1.90723 1.42368 1.23265 1.86485 1.84459 1.77071 1.52367 1.17842 1.61743 1.57604 1.04211 1.02660 1.22105 0.99275 0.95719 0.88961 1.21583 0.99319 0.96371 0.97621 1.21414 0.97619 0.94891 0.99804 1.18556 0.94370 0.92413 0.91223 0.99297 1.21513 1.11612 1.03317 1.20893 0.93447 1.25731 0.95658 1.00910 0.96219 1.70105 1.20173 1.37644 1.27856 0.85627 0.78710 0.79197 0.78630 1.19761 1.20926 1.19402 1.21998 0.93899 0.89319 0.98960 0.90255 0.89055 0.93686 0.74229 0.86757 0.86641 0.70097 0.94100 0.88417 0.93678 0.90453 0.94308 0.94880 0.93130 0.92711 0.95991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.30 71.98 0.60 -3.38 16 2 C 0.07 1.76 2.70 44.17 0.12 1.88 16 3 H 0.14 2.60 7.86 -2.39 -0.02 2.58 16 4 C 0.52 15.42 6.96 87.66 0.61 16.03 16 5 O -0.56 -22.56 14.32 -3.03 -0.04 -22.60 16 6 N -0.72 -14.86 5.53 -466.79 -2.58 -17.44 16 7 C 0.12 2.17 6.27 85.64 0.54 2.71 16 8 C 0.50 7.42 8.40 71.24 0.60 8.02 16 9 O -0.54 -10.48 16.43 21.97 0.36 -10.12 16 10 O -0.50 -4.96 13.42 -51.43 -0.69 -5.65 16 11 N -0.54 -19.61 4.34 -875.55 -3.80 -23.41 16 12 C 0.07 2.08 5.22 86.33 0.45 2.53 16 13 C -0.11 -4.22 6.09 30.65 0.19 -4.04 16 14 C -0.10 -4.83 5.09 30.67 0.16 -4.68 16 15 C 0.05 2.90 2.13 -11.49 -0.02 2.88 16 16 H -0.01 -0.72 8.11 -2.39 -0.02 -0.74 16 17 C -0.53 -31.59 8.49 25.60 0.22 -31.38 16 18 H 0.05 2.76 7.76 -2.91 -0.02 2.74 16 19 C 0.01 0.78 5.26 84.66 0.45 1.23 16 20 N -0.92 -56.39 12.04 21.45 0.26 -56.14 16 21 Si 0.95 45.73 29.54 68.60 2.03 47.76 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 25 C 0.09 3.88 3.39 86.33 0.29 4.17 16 26 H 0.08 1.67 7.09 -2.39 -0.02 1.66 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.29 6.45 -2.39 -0.02 1.27 16 29 H 0.42 7.00 7.44 -92.71 -0.69 6.31 16 30 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.44 0.37 9.10 -74.06 -0.67 -0.30 16 33 H 0.04 1.19 7.13 -2.39 -0.02 1.17 16 34 H 0.10 2.35 7.95 -2.39 -0.02 2.33 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.04 2.13 6.86 -2.39 -0.02 2.12 16 38 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 40 H 0.05 2.74 5.92 -2.39 -0.01 2.73 16 41 H 0.02 0.96 6.59 -2.39 -0.02 0.95 16 Total: -1.00 -78.89 330.66 -0.59 -79.48 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -0.31 Total: 12.14 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 4.19 Total: -4.03 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -6.12 Total: -96.98 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.37 Total: -38.36 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -78.89 -0.59 -79.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589396655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.121 kcal (2) G-P(sol) polarization free energy of solvation -78.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds