Wall clock time and date at job start Tue Mar 31 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 N 1.46493 * 109.47400 * 60.00416 * 12 2 1 14 14 C 1.34770 * 120.00393 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99788 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00528 * 179.97438 * 14 13 12 17 17 C 1.47021 * 125.64448 * 359.69870 * 16 14 13 18 18 C 1.54317 * 107.27768 * 180.96707 * 17 16 14 19 19 C 1.55158 * 102.85800 * 22.52295 * 18 17 16 20 20 H 1.09003 * 111.00751 * 82.38521 * 19 18 17 21 21 C 1.50701 * 111.03467 * 206.21563 * 19 18 17 22 22 O 1.20832 * 119.99744 * 353.67222 * 21 19 18 23 23 O 1.34225 * 120.00190 * 173.67070 * 21 19 18 24 24 C 1.47426 * 125.65079 * 180.02562 * 16 14 13 25 25 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 26 26 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 27 27 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 30 30 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 31 31 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 34 34 H 0.97000 * 120.00040 * 359.97438 * 13 12 2 35 35 H 1.09008 * 109.88206 * 300.50935 * 17 16 14 36 36 H 1.08999 * 109.88344 * 61.67118 * 17 16 14 37 37 H 1.08996 * 110.92094 * 264.11163 * 18 17 16 38 38 H 1.08997 * 110.74470 * 140.85221 * 18 17 16 39 39 H 0.96703 * 117.00187 * 180.02562 * 23 21 19 40 40 H 1.08993 * 110.36735 * 274.67487 * 24 16 14 41 41 H 1.08999 * 110.36232 * 36.89488 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.6422 -0.5355 4.4055 10 1 1.3588 -0.9387 5.1155 11 1 2.4973 -2.5587 3.7155 12 6 2.0399 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6694 15 8 2.5767 -1.4795 -3.7809 16 7 1.4281 0.1442 -4.7700 17 6 0.5734 1.3404 -4.7798 18 6 0.2962 1.6934 -6.2563 19 6 0.5354 0.3445 -6.9847 20 1 -0.3464 -0.2935 -6.9252 21 6 0.9405 0.5685 -8.4188 22 8 0.9277 1.6841 -8.8829 23 8 1.3156 -0.4710 -9.1806 24 6 1.7065 -0.2495 -6.1631 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7164 1.1668 3.4844 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -1.7489 -1.2492 34 1 0.9938 0.7578 -2.3564 35 1 -0.3641 1.1304 -4.2647 36 1 1.0888 2.1683 -4.2931 37 1 0.9925 2.4527 -6.6122 38 1 -0.7339 2.0250 -6.3871 39 1 1.5671 -0.2778 -10.0941 40 1 2.6548 0.1732 -6.4946 41 1 1.7234 -1.3355 -6.2542 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590615163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:25 Heat of formation + Delta-G solvation = -123.169619 kcal Electronic energy + Delta-G solvation = -22866.001742 eV Core-core repulsion = 19359.848924 eV Total energy + Delta-G solvation = -3506.152818 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94628 -39.78225 -37.63253 -36.49380 -36.16968 -33.34998 -31.96300 -30.59063 -29.54063 -25.89451 -25.72482 -25.23146 -23.91514 -23.05916 -20.71133 -19.77586 -18.82820 -18.45526 -18.02507 -17.39885 -16.12623 -15.88328 -15.55381 -15.33790 -14.77587 -14.45668 -13.97721 -13.71173 -13.40586 -13.28859 -13.09766 -12.73101 -12.50108 -12.20415 -12.01859 -11.88825 -11.68343 -11.38378 -11.24360 -11.19415 -10.91839 -10.86371 -10.68688 -10.38348 -10.20808 -9.83061 -9.63190 -9.31655 -8.79139 -8.75486 -8.40752 -8.17925 -6.02050 -4.11900 1.77172 2.49483 2.95505 3.28822 3.35821 3.40172 3.54607 3.89967 4.22480 4.36967 4.52289 4.59689 4.89098 4.95780 5.01480 5.24893 5.40844 5.51327 5.55659 5.61792 5.77330 6.08689 6.10728 6.29511 6.36091 6.50620 6.78978 6.82484 6.91805 7.02998 7.07840 7.28299 7.38652 7.50113 7.55940 7.70054 8.01215 8.12292 8.35391 8.40801 8.87612 8.98087 9.53883 10.99439 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.044835 B = 0.003171 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.366306 B = 8829.211214 C = 9203.964183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.149 3.851 13 N -0.728 5.728 14 C 0.717 3.283 15 O -0.594 6.594 16 N -0.644 5.644 17 C 0.098 3.902 18 C -0.111 4.111 19 C -0.102 4.102 20 H 0.125 0.875 21 C 0.495 3.505 22 O -0.511 6.511 23 O -0.512 6.512 24 C 0.144 3.856 25 H 0.085 0.915 26 H 0.005 0.995 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.005 0.995 30 H 0.085 0.915 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.394 0.606 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.412 0.588 40 H 0.067 0.933 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 2.362 -18.858 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.026 3.974 13 N -0.383 5.383 14 C 0.419 3.581 15 O -0.472 6.472 16 N -0.384 5.384 17 C -0.025 4.025 18 C -0.149 4.149 19 C -0.122 4.122 20 H 0.143 0.857 21 C 0.337 3.663 22 O -0.399 6.399 23 O -0.323 6.323 24 C 0.020 3.980 25 H 0.104 0.896 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.024 0.976 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.229 0.771 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.271 0.729 40 H 0.085 0.915 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.035 1.910 -18.368 18.714 hybrid contribution 0.156 0.139 0.221 0.304 sum -2.879 2.048 -18.147 18.487 Atomic orbital electron populations 1.21815 0.97762 0.99168 0.99947 1.18363 0.92815 0.92773 0.90507 1.21822 0.98601 0.98358 0.99983 1.20993 1.31511 1.12055 0.89848 0.92369 1.24878 0.94858 0.94929 0.98848 1.69807 1.36728 1.22760 1.23210 0.86564 0.78560 0.80160 0.82548 1.20726 1.21290 1.19879 1.21625 0.97971 0.95478 0.82285 1.45516 1.55387 1.33043 1.04305 1.15553 0.80313 0.82383 0.79824 1.90901 1.43216 1.27581 1.85526 1.47509 1.55315 1.30802 1.04808 1.22034 0.95190 0.88366 0.96957 1.22606 1.04221 0.95204 0.92883 1.22250 1.01630 1.00957 0.87325 0.85670 1.22995 0.72749 0.81992 0.88612 1.90740 1.49686 1.25258 1.74208 1.84563 1.78381 1.40336 1.29048 1.21750 0.95232 1.01345 0.79711 0.89642 0.97632 0.95415 0.95439 0.97629 0.89593 0.93023 0.92865 0.92837 0.77059 0.90935 0.90843 0.89053 0.88953 0.72937 0.91456 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.92 8.07 37.16 0.30 -2.62 16 4 C -0.51 -13.21 8.01 -34.44 -0.28 -13.48 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.48 9.35 55.43 0.52 -22.96 16 8 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.15 3.21 4.50 -4.05 -0.02 3.19 16 13 N -0.73 -13.25 4.92 -65.23 -0.32 -13.57 16 14 C 0.72 13.02 8.49 -86.92 -0.74 12.28 16 15 O -0.59 -13.02 16.60 5.28 0.09 -12.94 16 16 N -0.64 -8.71 3.33 -176.26 -0.59 -9.30 16 17 C 0.10 0.98 6.14 -3.07 -0.02 0.96 16 18 C -0.11 -0.90 6.03 -24.90 -0.15 -1.05 16 19 C -0.10 -0.85 3.54 -89.63 -0.32 -1.16 16 20 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 21 C 0.50 4.31 7.64 36.01 0.27 4.58 16 22 O -0.51 -5.79 16.55 -18.75 -0.31 -6.10 16 23 O -0.51 -3.42 13.41 -39.25 -0.53 -3.95 16 24 C 0.14 1.60 6.36 -2.54 -0.02 1.59 16 25 H 0.08 2.11 6.08 -51.93 -0.32 1.79 16 26 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.09 2.13 6.06 -51.93 -0.31 1.81 16 31 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.39 6.47 5.15 -40.82 -0.21 6.26 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.79 7.50 -51.93 -0.39 0.40 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.41 1.01 9.10 45.56 0.41 1.43 16 40 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 41 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -31.88 332.40 -7.26 -39.14 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.29 Total: 4.47 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -0.83 Total: 4.56 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -0.39 Total: -45.83 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.75 Total: -22.99 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.88 -7.26 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.028 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds