Wall clock time and date at job start Tue Mar 31 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 N 1.46493 * 109.47400 * 60.00416 * 12 2 1 14 14 C 1.34770 * 120.00393 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99788 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00528 * 179.97438 * 14 13 12 17 17 C 1.47021 * 125.64448 * 359.69870 * 16 14 13 18 18 C 1.54317 * 107.27768 * 180.96707 * 17 16 14 19 19 C 1.55158 * 102.85800 * 22.52295 * 18 17 16 20 20 H 1.09003 * 111.00751 * 82.38521 * 19 18 17 21 21 C 1.50701 * 111.03467 * 206.21563 * 19 18 17 22 22 O 1.20832 * 119.99744 * 353.67222 * 21 19 18 23 23 O 1.34225 * 120.00190 * 173.67070 * 21 19 18 24 24 C 1.47426 * 125.65079 * 180.02562 * 16 14 13 25 25 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 26 26 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 27 27 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 30 30 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 31 31 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 34 34 H 0.97000 * 120.00040 * 359.97438 * 13 12 2 35 35 H 1.09008 * 109.88206 * 300.50935 * 17 16 14 36 36 H 1.08999 * 109.88344 * 61.67118 * 17 16 14 37 37 H 1.08996 * 110.92094 * 264.11163 * 18 17 16 38 38 H 1.08997 * 110.74470 * 140.85221 * 18 17 16 39 39 H 0.96703 * 117.00187 * 180.02562 * 23 21 19 40 40 H 1.08993 * 110.36735 * 274.67487 * 24 16 14 41 41 H 1.08999 * 110.36232 * 36.89488 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.6422 -0.5355 4.4055 10 1 1.3588 -0.9387 5.1155 11 1 2.4973 -2.5587 3.7155 12 6 2.0399 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6694 15 8 2.5767 -1.4795 -3.7809 16 7 1.4281 0.1442 -4.7700 17 6 0.5734 1.3404 -4.7798 18 6 0.2962 1.6934 -6.2563 19 6 0.5354 0.3445 -6.9847 20 1 -0.3464 -0.2935 -6.9252 21 6 0.9405 0.5685 -8.4188 22 8 0.9277 1.6841 -8.8829 23 8 1.3156 -0.4710 -9.1806 24 6 1.7065 -0.2495 -6.1631 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7164 1.1668 3.4844 32 1 3.1300 -0.7217 -1.2490 33 1 1.6767 -1.7489 -1.2492 34 1 0.9938 0.7578 -2.3564 35 1 -0.3641 1.1304 -4.2647 36 1 1.0888 2.1683 -4.2931 37 1 0.9925 2.4527 -6.6122 38 1 -0.7339 2.0250 -6.3871 39 1 1.5671 -0.2778 -10.0941 40 1 2.6548 0.1732 -6.4946 41 1 1.7234 -1.3355 -6.2542 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590615163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:25 Heat of formation + Delta-G solvation = -144.756767 kcal Electronic energy + Delta-G solvation = -22866.937831 eV Core-core repulsion = 19359.848924 eV Total energy + Delta-G solvation = -3507.088907 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.76724 -40.94415 -38.81408 -37.86220 -37.09734 -35.03246 -33.27382 -32.15494 -30.35849 -27.54673 -27.52074 -26.97848 -25.08676 -23.95383 -21.41787 -21.11597 -20.57459 -19.28595 -19.10128 -18.15041 -17.78633 -17.03127 -16.73898 -16.68919 -16.49694 -15.58644 -15.29050 -14.88176 -14.67898 -14.56782 -14.21472 -14.00187 -13.92879 -13.69103 -13.17468 -13.07859 -12.77209 -12.67404 -12.58341 -12.55303 -12.41832 -12.23383 -12.11951 -11.92177 -11.65558 -11.47006 -11.38120 -11.13731 -10.69216 -10.38692 -10.13264 -9.50789 -8.01038 -6.16443 1.07278 1.43949 1.46716 1.53661 1.58128 2.08977 2.17538 2.47385 3.05188 3.22797 3.31839 3.48064 3.95108 4.16154 4.21945 4.40395 4.42800 4.54291 4.60684 4.70489 4.73159 4.79782 4.91147 5.01026 5.07273 5.08914 5.11617 5.21617 5.27031 5.39069 5.58493 5.62393 5.68927 5.69190 6.02450 6.16931 6.23428 6.45311 6.87722 6.96581 7.00261 7.51219 7.56337 8.97988 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.044835 B = 0.003171 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.366306 B = 8829.211214 C = 9203.964183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.052 3.948 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.045 0.955 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.276 1.276 12 C 0.167 3.833 13 N -0.722 5.722 14 C 0.714 3.286 15 O -0.638 6.638 16 N -0.639 5.639 17 C 0.091 3.909 18 C -0.102 4.102 19 C -0.092 4.092 20 H 0.145 0.855 21 C 0.503 3.497 22 O -0.539 6.539 23 O -0.510 6.510 24 C 0.139 3.861 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.018 0.982 28 H 0.016 0.984 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.260 0.740 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.405 0.595 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.430 0.570 40 H 0.066 0.934 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.430 3.083 -20.142 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.042 3.958 13 N -0.377 5.377 14 C 0.416 3.584 15 O -0.520 6.520 16 N -0.378 5.378 17 C -0.031 4.031 18 C -0.139 4.139 19 C -0.112 4.112 20 H 0.163 0.837 21 C 0.346 3.654 22 O -0.429 6.429 23 O -0.324 6.324 24 C 0.015 3.985 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.242 0.758 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.293 0.707 40 H 0.085 0.915 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.086 2.663 -19.707 20.302 hybrid contribution 0.492 -0.099 0.528 0.728 sum -3.594 2.565 -19.180 19.681 Atomic orbital electron populations 1.21648 0.96954 0.98697 1.00325 1.18354 0.93385 0.92985 0.90103 1.21661 0.97854 0.97877 1.00332 1.21282 1.31804 1.12152 0.91560 0.93700 1.25435 0.95135 0.95585 1.00906 1.69905 1.36994 1.23247 1.23605 0.85764 0.78088 0.79065 0.79916 1.20574 1.20800 1.20072 1.21160 0.96725 0.94768 0.83100 1.45195 1.55643 1.33193 1.03653 1.15647 0.80075 0.82132 0.80540 1.90867 1.45185 1.29671 1.86288 1.47473 1.54659 1.31231 1.04413 1.22319 0.95086 0.86898 0.98791 1.22584 1.05566 0.94731 0.91066 1.22207 1.00937 1.01238 0.86777 0.83720 1.22919 0.72054 0.81706 0.88710 1.90741 1.51000 1.26299 1.74829 1.84527 1.77801 1.39589 1.30458 1.21863 0.96676 1.01061 0.78864 0.91873 0.94497 0.96261 0.96446 0.94589 0.91785 0.93016 0.94669 0.94459 0.75799 0.89532 0.90336 0.89573 0.86501 0.70738 0.91534 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.08 71.98 0.58 -4.60 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.28 8.07 71.98 0.58 -4.69 16 4 C -0.53 -27.98 8.01 25.60 0.21 -27.78 16 5 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.53 5.15 84.66 0.44 1.97 16 7 N -0.90 -47.54 9.35 21.45 0.20 -47.34 16 8 Si 0.94 42.47 29.54 68.60 2.03 44.50 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 C 0.17 7.20 4.50 86.38 0.39 7.59 16 13 N -0.72 -25.49 4.92 -478.55 -2.35 -27.85 16 14 C 0.71 25.42 8.49 179.06 1.52 26.94 16 15 O -0.64 -28.25 16.60 -4.01 -0.07 -28.32 16 16 N -0.64 -16.24 3.33 -829.81 -2.76 -19.00 16 17 C 0.09 1.56 6.14 86.73 0.53 2.09 16 18 C -0.10 -1.32 6.03 31.78 0.19 -1.12 16 19 C -0.09 -1.29 3.54 -10.16 -0.04 -1.32 16 20 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 21 C 0.50 7.59 7.64 71.24 0.54 8.13 16 22 O -0.54 -11.08 16.55 21.95 0.36 -10.72 16 23 O -0.51 -5.66 13.41 -51.37 -0.69 -6.35 16 24 C 0.14 2.89 6.36 86.85 0.55 3.44 16 25 H 0.06 3.07 6.08 -2.39 -0.01 3.06 16 26 H 0.04 1.33 6.86 -2.39 -0.02 1.32 16 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.04 1.32 6.86 -2.39 -0.02 1.31 16 30 H 0.06 3.14 6.06 -2.39 -0.01 3.12 16 31 H 0.26 13.26 8.31 -92.70 -0.77 12.49 16 32 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.40 12.36 5.15 -92.71 -0.48 11.88 16 35 H 0.09 1.29 8.14 -2.38 -0.02 1.28 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.26 7.50 -2.39 -0.02 1.25 16 38 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.43 1.13 9.10 -74.05 -0.67 0.46 16 40 H 0.07 1.40 8.03 -2.39 -0.02 1.38 16 41 H 0.08 1.88 8.03 -2.39 -0.02 1.86 16 Total: -1.00 -68.85 332.40 2.09 -66.76 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -0.10 Total: 15.29 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 5.47 Total: 13.03 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -4.91 Total: -94.19 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -0.39 Total: -45.39 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -68.85 2.09 -66.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.000 kcal (2) G-P(sol) polarization free energy of solvation -68.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds