Wall clock time and date at job start Tue Mar 31 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47001 * 2 1 4 4 C 1.50709 * 109.46806 * 119.99525 * 2 1 3 5 5 H 1.07993 * 119.99859 * 124.92508 * 4 2 1 6 6 C 1.37875 * 119.99722 * 304.91962 * 4 2 1 7 7 N 1.31510 * 120.00482 * 351.63580 * 6 4 2 8 8 Si 1.86802 * 119.99745 * 171.63554 * 6 4 2 9 9 H 1.48504 * 109.46958 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47045 * 240.00198 * 8 6 4 11 11 H 1.48501 * 109.47309 * 119.99915 * 8 6 4 12 12 C 1.52997 * 109.47189 * 239.99290 * 2 1 3 13 13 N 1.46500 * 109.47033 * 60.00068 * 12 2 1 14 14 C 1.34766 * 120.00023 * 179.97438 * 13 12 2 15 15 O 1.21595 * 120.00360 * 0.02562 * 14 13 12 16 16 N 1.34786 * 120.00079 * 180.02562 * 14 13 12 17 17 C 1.47018 * 125.64732 * 0.02562 * 16 14 13 18 18 C 1.54324 * 107.26940 * 178.90523 * 17 16 14 19 19 C 1.55155 * 102.94338 * 337.80935 * 18 17 16 20 20 H 1.09002 * 111.00268 * 277.38890 * 19 18 17 21 21 C 1.50703 * 111.00200 * 153.57770 * 19 18 17 22 22 O 1.20819 * 120.00059 * 359.97438 * 21 19 18 23 23 O 1.34228 * 119.99681 * 180.02562 * 21 19 18 24 24 C 1.47422 * 125.64668 * 179.71771 * 16 14 13 25 25 H 1.08995 * 109.46960 * 292.92512 * 1 2 3 26 26 H 1.08995 * 109.46471 * 52.92280 * 1 2 3 27 27 H 1.08997 * 109.46636 * 172.92363 * 1 2 3 28 28 H 1.09003 * 109.47060 * 187.35687 * 3 2 1 29 29 H 1.09002 * 109.46833 * 307.34980 * 3 2 1 30 30 H 1.08992 * 109.47930 * 67.35677 * 3 2 1 31 31 H 0.97003 * 120.00017 * 5.71955 * 7 6 4 32 32 H 1.09002 * 109.46904 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.47238 * 299.99981 * 12 2 1 34 34 H 0.97000 * 119.99852 * 0.02562 * 13 12 2 35 35 H 1.08998 * 109.88261 * 298.32541 * 17 16 14 36 36 H 1.09006 * 109.87878 * 59.49160 * 17 16 14 37 37 H 1.08997 * 110.71825 * 96.17659 * 18 17 16 38 38 H 1.09003 * 110.72059 * 219.26642 * 18 17 16 39 39 H 0.96703 * 116.99393 * 179.97438 * 23 21 19 40 40 H 1.09002 * 110.36889 * 323.00247 * 24 16 14 41 41 H 1.09003 * 110.36554 * 85.32510 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2306 5 1 2.7171 -1.5398 1.1336 6 6 1.6177 -0.3012 2.4802 7 7 0.9187 0.8050 2.6117 8 14 2.0487 -1.3182 3.9867 9 1 2.8351 -2.5078 3.5724 10 1 0.8006 -1.7602 4.6592 11 1 2.8524 -0.4954 4.9260 12 6 2.0401 -0.7214 -1.2491 13 7 1.5518 -0.0309 -2.4454 14 6 1.8778 -0.4912 -3.6693 15 8 2.5768 -1.4798 -3.7809 16 7 1.4289 0.1444 -4.7699 17 6 0.5806 1.3451 -4.7799 18 6 0.3452 1.7275 -6.2564 19 6 1.5381 1.0535 -6.9844 20 1 2.4328 1.6732 -6.9247 21 6 1.1919 0.7464 -8.4186 22 8 0.0989 1.0280 -8.8498 23 8 2.0974 0.1593 -9.2166 24 6 1.7126 -0.2456 -6.1630 25 1 -0.3633 0.4003 0.9465 26 1 -0.3632 0.6196 -0.8199 27 1 -0.3632 -1.0198 -0.1266 28 1 3.1221 1.4453 -0.1316 29 1 1.5733 1.9928 -0.8170 30 1 1.7882 1.9170 0.9483 31 1 0.6238 1.2888 1.8244 32 1 3.1301 -0.7218 -1.2488 33 1 1.6768 -1.7490 -1.2490 34 1 0.9944 0.7580 -2.3564 35 1 -0.3722 1.1299 -4.2962 36 1 1.0860 2.1603 -4.2619 37 1 -0.6023 1.3235 -6.6129 38 1 0.3737 2.8097 -6.3838 39 1 1.8293 -0.0182 -10.1286 40 1 2.7333 -0.6174 -6.2526 41 1 1.0020 -1.0015 -6.4975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590615164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:29 Heat of formation + Delta-G solvation = -116.950889 kcal Electronic energy + Delta-G solvation = -22921.273934 eV Core-core repulsion = 19415.390780 eV Total energy + Delta-G solvation = -3505.883154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.00035 -39.86246 -37.77824 -36.68701 -36.39564 -33.62764 -32.02712 -30.34322 -29.59985 -26.17833 -26.06723 -25.10091 -23.78058 -23.07230 -20.72767 -19.89264 -18.93460 -18.53547 -18.28012 -17.43451 -16.64737 -16.11505 -15.64328 -15.50991 -14.59487 -14.33087 -13.85905 -13.75907 -13.57738 -13.42203 -13.10145 -12.69371 -12.64779 -12.53677 -12.06054 -11.97254 -11.73122 -11.55973 -11.28823 -11.26616 -10.96804 -10.93289 -10.63257 -10.62054 -10.13266 -9.92213 -9.90091 -9.53046 -8.83521 -8.56644 -8.31688 -8.20643 -6.27852 -4.11875 1.72775 2.43635 2.89408 3.43931 3.45912 3.46256 3.60846 3.85974 4.16410 4.37291 4.52450 4.55543 4.84076 4.90046 4.95982 5.30955 5.34336 5.45408 5.49172 5.55770 5.72217 5.92238 6.07353 6.14086 6.17874 6.23925 6.54551 6.60240 6.68046 6.78938 6.90458 7.05698 7.08778 7.21815 7.46493 7.48754 7.64772 8.17385 8.26545 8.40274 8.82610 8.88368 9.58573 10.98462 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.044728 B = 0.003180 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.851174 B = 8803.193929 C = 9162.962045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 C -0.143 4.143 4 C -0.586 4.586 5 H 0.054 0.946 6 C 0.026 3.974 7 N -0.918 5.918 8 Si 1.070 2.930 9 H -0.289 1.289 10 H -0.287 1.287 11 H -0.288 1.288 12 C 0.157 3.843 13 N -0.731 5.731 14 C 0.718 3.282 15 O -0.592 6.592 16 N -0.643 5.643 17 C 0.098 3.902 18 C -0.112 4.112 19 C -0.102 4.102 20 H 0.124 0.876 21 C 0.495 3.505 22 O -0.510 6.510 23 O -0.512 6.512 24 C 0.144 3.856 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.013 0.987 30 H 0.071 0.929 31 H 0.281 0.719 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.393 0.607 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.412 0.588 40 H 0.092 0.908 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 3.631 -19.623 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.040 3.960 3 C -0.201 4.201 4 C -0.624 4.624 5 H 0.072 0.928 6 C -0.178 4.178 7 N -0.559 5.559 8 Si 0.899 3.101 9 H -0.215 1.215 10 H -0.214 1.214 11 H -0.215 1.215 12 C 0.034 3.966 13 N -0.385 5.385 14 C 0.420 3.580 15 O -0.470 6.470 16 N -0.384 5.384 17 C -0.026 4.026 18 C -0.150 4.150 19 C -0.122 4.122 20 H 0.142 0.858 21 C 0.337 3.663 22 O -0.398 6.398 23 O -0.323 6.323 24 C 0.020 3.980 25 H 0.091 0.909 26 H 0.034 0.966 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.032 0.968 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.228 0.772 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.271 0.729 40 H 0.110 0.890 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.566 2.963 -17.631 17.887 hybrid contribution -0.376 0.383 -2.326 2.387 sum -0.942 3.346 -19.957 20.257 Atomic orbital electron populations 1.22032 0.98252 0.99407 1.00581 1.18542 0.92314 0.92721 0.92393 1.22072 0.99300 0.98376 1.00338 1.21803 1.30669 1.18640 0.91325 0.92805 1.25668 0.94882 0.96343 1.00875 1.70821 1.36355 1.14025 1.34649 0.83533 0.76261 0.75235 0.75102 1.21474 1.21389 1.21453 1.21509 0.98026 0.95418 0.81602 1.45505 1.55563 1.33015 1.04392 1.15534 0.80216 0.82470 0.79783 1.90909 1.43159 1.27460 1.85493 1.47499 1.55175 1.30888 1.04790 1.22040 0.95403 0.88036 0.97072 1.22620 0.97800 1.01768 0.92845 1.22193 1.02445 1.00159 0.87365 0.85792 1.22959 0.81763 0.73148 0.88475 1.90737 1.23554 1.49566 1.75931 1.84560 1.46732 1.73176 1.27875 1.21708 1.03072 0.93534 0.79696 0.90889 0.96614 0.94388 0.94472 0.96762 0.91077 0.90276 0.92671 0.92599 0.77209 0.90855 0.91011 0.88878 0.88951 0.72891 0.88975 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 7.85 37.16 0.29 -2.89 16 2 C 0.04 0.95 0.50 -155.66 -0.08 0.87 16 3 C -0.14 -3.13 7.91 37.16 0.29 -2.83 16 4 C -0.59 -15.56 8.00 -34.44 -0.28 -15.83 16 5 H 0.05 1.46 7.76 -52.49 -0.41 1.05 16 6 C 0.03 0.71 5.07 -17.82 -0.09 0.62 16 7 N -0.92 -25.68 12.17 55.43 0.67 -25.01 16 8 Si 1.07 24.48 29.91 -169.99 -5.08 19.39 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.16 3.37 4.50 -4.04 -0.02 3.35 16 13 N -0.73 -13.09 5.00 -65.23 -0.33 -13.42 16 14 C 0.72 12.89 8.49 -86.92 -0.74 12.15 16 15 O -0.59 -12.90 16.60 5.28 0.09 -12.81 16 16 N -0.64 -8.58 3.33 -176.38 -0.59 -9.17 16 17 C 0.10 0.96 6.15 -3.07 -0.02 0.94 16 18 C -0.11 -0.88 6.08 -24.90 -0.15 -1.04 16 19 C -0.10 -0.83 3.53 -89.74 -0.32 -1.15 16 20 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 21 C 0.50 4.24 7.64 36.01 0.28 4.52 16 22 O -0.51 -5.73 16.47 -18.74 -0.31 -6.03 16 23 O -0.51 -3.35 13.42 -39.25 -0.53 -3.87 16 24 C 0.14 1.59 6.36 -2.65 -0.02 1.57 16 25 H 0.07 1.77 5.16 -51.93 -0.27 1.50 16 26 H 0.01 0.29 7.04 -51.93 -0.37 -0.08 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.01 0.26 7.05 -51.93 -0.37 -0.11 16 30 H 0.07 1.72 5.30 -51.93 -0.28 1.45 16 31 H 0.28 7.58 3.59 -40.82 -0.15 7.43 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.39 6.28 5.28 -40.82 -0.22 6.07 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.80 7.39 -51.93 -0.38 0.42 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.41 0.95 9.10 45.56 0.41 1.37 16 40 H 0.09 1.08 8.04 -51.93 -0.42 0.66 16 41 H 0.07 0.74 8.02 -51.93 -0.42 0.33 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -33.28 329.18 -6.98 -40.26 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.02 Total: 5.43 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -0.84 Total: 0.27 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.24 Total: -47.59 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.75 Total: -22.72 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.08 Total: 19.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.28 -6.98 -40.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.696 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds