Wall clock time and date at job start Tue Mar 31 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47001 * 2 1 4 4 C 1.50709 * 109.46806 * 119.99525 * 2 1 3 5 5 H 1.07993 * 119.99859 * 124.92508 * 4 2 1 6 6 C 1.37875 * 119.99722 * 304.91962 * 4 2 1 7 7 N 1.31510 * 120.00482 * 351.63580 * 6 4 2 8 8 Si 1.86802 * 119.99745 * 171.63554 * 6 4 2 9 9 H 1.48504 * 109.46958 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47045 * 240.00198 * 8 6 4 11 11 H 1.48501 * 109.47309 * 119.99915 * 8 6 4 12 12 C 1.52997 * 109.47189 * 239.99290 * 2 1 3 13 13 N 1.46500 * 109.47033 * 60.00068 * 12 2 1 14 14 C 1.34766 * 120.00023 * 179.97438 * 13 12 2 15 15 O 1.21595 * 120.00360 * 0.02562 * 14 13 12 16 16 N 1.34786 * 120.00079 * 180.02562 * 14 13 12 17 17 C 1.47018 * 125.64732 * 0.02562 * 16 14 13 18 18 C 1.54324 * 107.26940 * 178.90523 * 17 16 14 19 19 C 1.55155 * 102.94338 * 337.80935 * 18 17 16 20 20 H 1.09002 * 111.00268 * 277.38890 * 19 18 17 21 21 C 1.50703 * 111.00200 * 153.57770 * 19 18 17 22 22 O 1.20819 * 120.00059 * 359.97438 * 21 19 18 23 23 O 1.34228 * 119.99681 * 180.02562 * 21 19 18 24 24 C 1.47422 * 125.64668 * 179.71771 * 16 14 13 25 25 H 1.08995 * 109.46960 * 292.92512 * 1 2 3 26 26 H 1.08995 * 109.46471 * 52.92280 * 1 2 3 27 27 H 1.08997 * 109.46636 * 172.92363 * 1 2 3 28 28 H 1.09003 * 109.47060 * 187.35687 * 3 2 1 29 29 H 1.09002 * 109.46833 * 307.34980 * 3 2 1 30 30 H 1.08992 * 109.47930 * 67.35677 * 3 2 1 31 31 H 0.97003 * 120.00017 * 5.71955 * 7 6 4 32 32 H 1.09002 * 109.46904 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.47238 * 299.99981 * 12 2 1 34 34 H 0.97000 * 119.99852 * 0.02562 * 13 12 2 35 35 H 1.08998 * 109.88261 * 298.32541 * 17 16 14 36 36 H 1.09006 * 109.87878 * 59.49160 * 17 16 14 37 37 H 1.08997 * 110.71825 * 96.17659 * 18 17 16 38 38 H 1.09003 * 110.72059 * 219.26642 * 18 17 16 39 39 H 0.96703 * 116.99393 * 179.97438 * 23 21 19 40 40 H 1.09002 * 110.36889 * 323.00247 * 24 16 14 41 41 H 1.09003 * 110.36554 * 85.32510 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2306 5 1 2.7171 -1.5398 1.1336 6 6 1.6177 -0.3012 2.4802 7 7 0.9187 0.8050 2.6117 8 14 2.0487 -1.3182 3.9867 9 1 2.8351 -2.5078 3.5724 10 1 0.8006 -1.7602 4.6592 11 1 2.8524 -0.4954 4.9260 12 6 2.0401 -0.7214 -1.2491 13 7 1.5518 -0.0309 -2.4454 14 6 1.8778 -0.4912 -3.6693 15 8 2.5768 -1.4798 -3.7809 16 7 1.4289 0.1444 -4.7699 17 6 0.5806 1.3451 -4.7799 18 6 0.3452 1.7275 -6.2564 19 6 1.5381 1.0535 -6.9844 20 1 2.4328 1.6732 -6.9247 21 6 1.1919 0.7464 -8.4186 22 8 0.0989 1.0280 -8.8498 23 8 2.0974 0.1593 -9.2166 24 6 1.7126 -0.2456 -6.1630 25 1 -0.3633 0.4003 0.9465 26 1 -0.3632 0.6196 -0.8199 27 1 -0.3632 -1.0198 -0.1266 28 1 3.1221 1.4453 -0.1316 29 1 1.5733 1.9928 -0.8170 30 1 1.7882 1.9170 0.9483 31 1 0.6238 1.2888 1.8244 32 1 3.1301 -0.7218 -1.2488 33 1 1.6768 -1.7490 -1.2490 34 1 0.9944 0.7580 -2.3564 35 1 -0.3722 1.1299 -4.2962 36 1 1.0860 2.1603 -4.2619 37 1 -0.6023 1.3235 -6.6129 38 1 0.3737 2.8097 -6.3838 39 1 1.8293 -0.0182 -10.1286 40 1 2.7333 -0.6174 -6.2526 41 1 1.0020 -1.0015 -6.4975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590615164.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:28 Heat of formation + Delta-G solvation = -139.886882 kcal Electronic energy + Delta-G solvation = -22922.268513 eV Core-core repulsion = 19415.390780 eV Total energy + Delta-G solvation = -3506.877733 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82140 -41.01319 -39.06015 -38.14903 -37.12131 -35.30079 -33.23752 -31.97967 -30.41057 -27.87770 -27.85652 -26.67993 -25.03835 -23.98933 -21.42568 -21.27573 -20.69961 -19.58667 -19.17872 -18.43191 -18.16574 -17.15028 -16.76753 -16.68740 -15.93854 -15.60926 -15.57135 -14.90161 -14.73062 -14.57202 -14.43339 -14.20943 -13.96550 -13.74238 -13.33911 -13.19499 -12.80477 -12.74280 -12.61140 -12.52690 -12.44947 -12.41638 -11.93849 -11.92174 -11.70964 -11.69014 -11.44582 -11.33599 -10.53116 -10.26007 -10.19979 -9.58366 -8.37625 -6.22936 1.03256 1.49134 1.58193 1.63953 1.81523 2.03236 2.12985 2.60504 2.98777 3.25745 3.28143 3.43551 3.92029 4.11811 4.16371 4.19574 4.35417 4.37067 4.48378 4.55086 4.65868 4.75506 4.80583 4.83321 4.86903 4.91638 4.99464 5.05998 5.17275 5.20729 5.21877 5.45469 5.56285 5.65487 5.84307 5.94801 6.18886 6.33975 6.75859 6.92769 6.94916 7.48122 7.53049 8.90622 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.044728 B = 0.003180 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.851174 B = 8803.193929 C = 9162.962045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.036 3.964 3 C -0.132 4.132 4 C -0.604 4.604 5 H 0.037 0.963 6 C -0.014 4.014 7 N -0.938 5.938 8 Si 1.107 2.893 9 H -0.281 1.281 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.176 3.824 13 N -0.722 5.722 14 C 0.715 3.285 15 O -0.637 6.637 16 N -0.638 5.638 17 C 0.091 3.909 18 C -0.103 4.103 19 C -0.092 4.092 20 H 0.144 0.856 21 C 0.503 3.497 22 O -0.538 6.538 23 O -0.510 6.510 24 C 0.139 3.861 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.280 0.720 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.405 0.595 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.431 0.569 40 H 0.082 0.918 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 4.864 -21.038 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.035 3.965 3 C -0.190 4.190 4 C -0.643 4.643 5 H 0.055 0.945 6 C -0.214 4.214 7 N -0.579 5.579 8 Si 0.932 3.068 9 H -0.207 1.207 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.051 3.949 13 N -0.378 5.378 14 C 0.417 3.583 15 O -0.519 6.519 16 N -0.377 5.377 17 C -0.031 4.031 18 C -0.141 4.141 19 C -0.112 4.112 20 H 0.162 0.838 21 C 0.346 3.654 22 O -0.428 6.428 23 O -0.324 6.324 24 C 0.015 3.985 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.242 0.758 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.293 0.707 40 H 0.101 0.899 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.000 4.236 -19.113 19.602 hybrid contribution -0.233 -0.014 -2.009 2.023 sum -1.233 4.222 -21.122 21.575 Atomic orbital electron populations 1.21884 0.97255 0.99473 1.00670 1.18536 0.93030 0.93221 0.91700 1.21907 0.99095 0.97615 1.00422 1.22116 1.30491 1.18502 0.93168 0.94460 1.26715 0.94614 0.96655 1.03370 1.70875 1.37353 1.14766 1.34936 0.83031 0.76447 0.74480 0.72875 1.20682 1.20731 1.20848 1.21015 0.96761 0.94569 0.82536 1.45153 1.55804 1.33183 1.03628 1.15632 0.79982 0.82212 0.80513 1.90875 1.45187 1.29570 1.86264 1.47462 1.54510 1.31323 1.04358 1.22335 0.95104 0.86797 0.98891 1.22601 0.97198 1.03215 0.91054 1.22148 1.03538 0.98679 0.86801 0.83821 1.22893 0.81322 0.72564 0.88627 1.90738 1.24651 1.50876 1.76543 1.84523 1.46180 1.72415 1.29235 1.21819 1.02516 0.95246 0.78889 0.93125 0.93173 0.95159 0.95132 0.93218 0.93377 0.90379 0.94477 0.94562 0.75813 0.90295 0.89499 0.89510 0.86400 0.70700 0.89921 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 7.85 71.98 0.57 -5.24 16 2 C 0.04 1.64 0.50 -52.92 -0.03 1.62 16 3 C -0.13 -5.66 7.91 71.98 0.57 -5.09 16 4 C -0.60 -32.50 8.00 25.60 0.20 -32.30 16 5 H 0.04 2.07 7.76 -2.91 -0.02 2.05 16 6 C -0.01 -0.74 5.07 84.65 0.43 -0.31 16 7 N -0.94 -52.55 12.17 21.45 0.26 -52.29 16 8 Si 1.11 49.41 29.91 68.60 2.05 51.47 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.18 7.55 4.50 86.38 0.39 7.94 16 13 N -0.72 -25.02 5.00 -478.54 -2.39 -27.41 16 14 C 0.71 25.11 8.49 179.05 1.52 26.63 16 15 O -0.64 -28.04 16.60 -4.01 -0.07 -28.11 16 16 N -0.64 -15.91 3.33 -830.19 -2.76 -18.67 16 17 C 0.09 1.50 6.15 86.73 0.53 2.03 16 18 C -0.10 -1.29 6.08 31.78 0.19 -1.09 16 19 C -0.09 -1.25 3.53 -10.23 -0.04 -1.29 16 20 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 21 C 0.50 7.45 7.64 71.24 0.54 7.99 16 22 O -0.54 -10.97 16.47 21.99 0.36 -10.61 16 23 O -0.51 -5.48 13.42 -51.40 -0.69 -6.17 16 24 C 0.14 2.85 6.36 86.78 0.55 3.40 16 25 H 0.05 2.43 5.16 -2.39 -0.01 2.42 16 26 H 0.05 1.76 7.04 -2.39 -0.02 1.75 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.72 7.05 -2.39 -0.02 1.71 16 30 H 0.05 2.30 5.30 -2.39 -0.01 2.28 16 31 H 0.28 15.14 3.59 -92.71 -0.33 14.81 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.41 11.90 5.28 -92.71 -0.49 11.41 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.09 1.26 7.39 -2.39 -0.02 1.24 16 38 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.43 1.00 9.10 -74.05 -0.67 0.32 16 40 H 0.08 1.87 8.04 -2.39 -0.02 1.85 16 41 H 0.07 1.38 8.02 -2.39 -0.02 1.36 16 Total: -1.00 -72.55 329.18 2.53 -70.02 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.33 Total: 17.47 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.44 Total: 4.29 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -4.89 Total: -98.37 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.39 Total: -44.88 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.05 Total: 51.47 kcal Total: -72.55 2.53 -70.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615164.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.870 kcal (2) G-P(sol) polarization free energy of solvation -72.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds