Wall clock time and date at job start Tue Mar 31 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47027 * 2 1 4 4 C 1.50695 * 109.47138 * 239.99508 * 2 1 3 5 5 H 1.08000 * 120.00026 * 240.00161 * 4 2 1 6 6 C 1.37874 * 119.99812 * 60.00589 * 4 2 1 7 7 N 1.31516 * 120.00161 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00116 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47214 * 59.99578 * 8 6 4 10 10 H 1.48502 * 109.47638 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47090 * 299.99787 * 8 6 4 12 12 C 1.53003 * 109.46825 * 119.99974 * 2 1 3 13 13 N 1.46503 * 109.46897 * 300.00135 * 12 2 1 14 14 C 1.34778 * 119.99856 * 180.02562 * 13 12 2 15 15 O 1.21585 * 120.00098 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00098 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00186 * 180.02562 * 16 14 13 18 18 H 1.08999 * 112.90525 * 336.24628 * 17 16 14 19 19 C 1.53778 * 113.61736 * 107.49948 * 17 16 14 20 20 C 1.53784 * 87.08081 * 89.11728 * 19 17 16 21 21 H 1.09004 * 113.61451 * 270.88641 * 20 19 17 22 22 C 1.50692 * 113.61665 * 139.98095 * 20 19 17 23 23 O 1.20830 * 120.00456 * 262.50575 * 22 20 19 24 24 O 1.34235 * 120.00215 * 82.49987 * 22 20 19 25 25 C 1.53778 * 113.61412 * 205.00214 * 17 16 14 26 26 H 1.09001 * 109.47333 * 299.99888 * 1 2 3 27 27 H 1.09002 * 109.46782 * 59.99917 * 1 2 3 28 28 H 1.09004 * 109.46756 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46893 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46891 * 299.99785 * 3 2 1 31 31 H 1.09001 * 109.46973 * 59.99891 * 3 2 1 32 32 H 0.97004 * 119.99938 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47100 * 180.02562 * 12 2 1 34 34 H 1.09003 * 109.47512 * 59.99801 * 12 2 1 35 35 H 0.96999 * 120.00478 * 359.97438 * 13 12 2 36 36 H 0.97004 * 119.99709 * 359.97438 * 16 14 13 37 37 H 1.08993 * 113.61229 * 334.57051 * 19 17 16 38 38 H 1.09000 * 113.61263 * 203.66701 * 19 17 16 39 39 H 0.96694 * 117.00544 * 180.02562 * 24 22 20 40 40 H 1.08998 * 113.61879 * 156.33410 * 25 17 16 41 41 H 1.08999 * 113.61887 * 25.42517 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8282 -2.5199 -4.0080 10 1 1.8271 -0.4201 -5.2204 11 1 3.8076 -1.1191 -4.0076 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8775 -0.4908 3.6696 15 8 2.5765 -1.4793 3.7812 16 7 1.4286 0.1449 4.7700 17 6 1.7834 -0.3549 6.1006 18 1 2.0379 -1.4148 6.1017 19 6 2.8073 0.5252 6.8366 20 6 1.6108 1.3145 7.3936 21 1 1.2997 2.1429 6.7571 22 6 1.7701 1.7126 8.8383 23 8 1.2630 1.0450 9.7084 24 8 2.4755 2.8089 9.1586 25 6 0.7767 0.0379 7.1948 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7084 1.1608 -3.4844 33 1 3.1300 -0.7209 1.2496 34 1 1.6766 -1.7490 1.2494 35 1 0.9942 0.7583 2.3564 36 1 0.8713 0.9338 4.6809 37 1 3.4420 1.1079 6.1689 38 1 3.3724 -0.0084 7.6008 39 1 2.5503 3.0238 10.0984 40 1 0.7867 -0.6288 8.0570 41 1 -0.2278 0.2272 6.8164 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590615365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:22 Heat of formation + Delta-G solvation = -108.717543 kcal Electronic energy + Delta-G solvation = -22427.306215 eV Core-core repulsion = 18921.780086 eV Total energy + Delta-G solvation = -3505.526129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11022 -39.78139 -38.27535 -36.44935 -36.23872 -33.41959 -32.80620 -30.69445 -27.21427 -26.08032 -25.72605 -25.53700 -24.72631 -22.23892 -20.96361 -19.49937 -18.81449 -18.59782 -18.14619 -17.07480 -16.18852 -15.94050 -15.78427 -15.13781 -14.74580 -14.69522 -14.22059 -13.74632 -13.52254 -13.16988 -12.87376 -12.81623 -12.52023 -12.21270 -12.08021 -11.87739 -11.40210 -11.19303 -11.04358 -11.00896 -10.83761 -10.73000 -10.60940 -10.38350 -10.21326 -9.82719 -9.63165 -9.31604 -9.05916 -8.80037 -8.41852 -8.23141 -6.02131 -4.12133 1.84341 2.71452 2.96634 3.30463 3.34674 3.38740 3.53658 4.00828 4.11317 4.38137 4.54633 4.58417 4.72668 4.99276 5.24700 5.29730 5.39146 5.53700 5.60502 5.66877 5.82320 6.15221 6.20470 6.36130 6.50232 6.61860 6.79129 6.82183 6.89665 7.02941 7.07405 7.27110 7.39634 7.55793 7.55796 7.69779 8.01161 8.12267 8.37526 8.44675 8.87442 9.00074 9.53688 10.99266 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.043165 B = 0.002823 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.518352 B = 9917.626475 C =10102.322166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.057 3.943 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.700 3.300 15 O -0.597 6.597 16 N -0.737 5.737 17 C 0.147 3.853 18 H 0.112 0.888 19 C -0.135 4.135 20 C -0.113 4.113 21 H 0.125 0.875 22 C 0.490 3.510 23 O -0.516 6.516 24 O -0.515 6.515 25 C -0.127 4.127 26 H 0.005 0.995 27 H 0.085 0.915 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.005 0.995 32 H 0.260 0.740 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.394 0.606 36 H 0.394 0.606 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.408 0.592 40 H 0.109 0.891 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 4.963 18.835 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.400 3.600 15 O -0.475 6.475 16 N -0.392 5.392 17 C 0.040 3.960 18 H 0.130 0.870 19 C -0.175 4.175 20 C -0.132 4.132 21 H 0.143 0.857 22 C 0.332 3.668 23 O -0.404 6.404 24 O -0.327 6.327 25 C -0.165 4.165 26 H 0.024 0.976 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.103 0.897 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.228 0.772 36 H 0.228 0.772 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.267 0.733 40 H 0.127 0.873 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.211 3.859 18.539 18.938 hybrid contribution -0.161 0.632 -0.210 0.685 sum -0.372 4.491 18.330 18.875 Atomic orbital electron populations 1.21827 0.97793 0.99174 0.99992 1.18355 0.92777 0.92756 0.90529 1.21822 0.98581 0.98364 0.99985 1.20953 1.31518 1.12124 0.89889 0.92446 1.24874 0.94856 0.94921 0.98838 1.69795 1.36647 1.22775 1.23314 0.86629 0.79246 0.79799 0.82158 1.20275 1.21355 1.20274 1.21603 0.97904 0.95442 0.82339 1.45519 1.55497 1.32996 1.04565 1.16050 0.80431 0.82913 0.80649 1.90889 1.42956 1.27686 1.85981 1.44820 1.57188 1.33116 1.04120 1.21466 0.94175 0.99641 0.80753 0.86983 1.23460 0.95945 0.97999 1.00051 1.22654 1.01527 0.99532 0.89515 0.85728 1.23423 0.73768 0.77050 0.92547 1.90717 1.46034 1.52668 1.51025 1.84577 1.68565 1.44728 1.34817 1.23399 0.98722 0.94927 0.99444 0.97565 0.89648 0.95438 0.95450 0.89656 0.97570 0.92966 0.92907 0.92898 0.77160 0.77191 0.89437 0.88694 0.73335 0.87265 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -13.14 8.01 -34.44 -0.28 -13.42 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.41 9.35 55.43 0.52 -22.89 16 8 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.15 3.15 4.50 -4.04 -0.02 3.13 16 13 N -0.73 -12.58 4.96 -65.22 -0.32 -12.91 16 14 C 0.70 11.77 8.57 -86.91 -0.74 11.02 16 15 O -0.60 -12.46 15.94 5.29 0.08 -12.38 16 16 N -0.74 -8.63 5.27 -57.88 -0.30 -8.93 16 17 C 0.15 1.51 4.32 -67.12 -0.29 1.22 16 18 H 0.11 1.36 7.46 -51.93 -0.39 0.97 16 19 C -0.14 -1.19 7.43 -25.92 -0.19 -1.38 16 20 C -0.11 -0.88 4.14 -90.96 -0.38 -1.25 16 21 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 22 C 0.49 4.35 7.85 36.00 0.28 4.63 16 23 O -0.52 -6.04 16.66 -18.75 -0.31 -6.35 16 24 O -0.52 -3.59 13.42 -39.27 -0.53 -4.12 16 25 C -0.13 -1.03 7.15 -25.92 -0.19 -1.21 16 26 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 27 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 2.09 6.07 -51.93 -0.32 1.78 16 31 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 32 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.39 6.00 6.18 -40.82 -0.25 5.75 16 36 H 0.39 3.52 8.72 -40.82 -0.36 3.17 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.41 1.17 9.10 45.56 0.41 1.58 16 40 H 0.11 0.94 7.43 -51.93 -0.39 0.55 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -31.58 336.14 -7.42 -39.00 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.23 Total: 7.50 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.37 Total: 0.44 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.11 Total: -44.73 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.76 Total: -22.85 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.58 -7.42 -39.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.721 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds