Wall clock time and date at job start Tue Mar 31 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47027 * 2 1 4 4 C 1.50695 * 109.47138 * 239.99508 * 2 1 3 5 5 H 1.08000 * 120.00026 * 240.00161 * 4 2 1 6 6 C 1.37874 * 119.99812 * 60.00589 * 4 2 1 7 7 N 1.31516 * 120.00161 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00116 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47214 * 59.99578 * 8 6 4 10 10 H 1.48502 * 109.47638 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47090 * 299.99787 * 8 6 4 12 12 C 1.53003 * 109.46825 * 119.99974 * 2 1 3 13 13 N 1.46503 * 109.46897 * 300.00135 * 12 2 1 14 14 C 1.34778 * 119.99856 * 180.02562 * 13 12 2 15 15 O 1.21585 * 120.00098 * 359.97438 * 14 13 12 16 16 N 1.34778 * 120.00098 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00186 * 180.02562 * 16 14 13 18 18 H 1.08999 * 112.90525 * 336.24628 * 17 16 14 19 19 C 1.53778 * 113.61736 * 107.49948 * 17 16 14 20 20 C 1.53784 * 87.08081 * 89.11728 * 19 17 16 21 21 H 1.09004 * 113.61451 * 270.88641 * 20 19 17 22 22 C 1.50692 * 113.61665 * 139.98095 * 20 19 17 23 23 O 1.20830 * 120.00456 * 262.50575 * 22 20 19 24 24 O 1.34235 * 120.00215 * 82.49987 * 22 20 19 25 25 C 1.53778 * 113.61412 * 205.00214 * 17 16 14 26 26 H 1.09001 * 109.47333 * 299.99888 * 1 2 3 27 27 H 1.09002 * 109.46782 * 59.99917 * 1 2 3 28 28 H 1.09004 * 109.46756 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46893 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46891 * 299.99785 * 3 2 1 31 31 H 1.09001 * 109.46973 * 59.99891 * 3 2 1 32 32 H 0.97004 * 119.99938 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47100 * 180.02562 * 12 2 1 34 34 H 1.09003 * 109.47512 * 59.99801 * 12 2 1 35 35 H 0.96999 * 120.00478 * 359.97438 * 13 12 2 36 36 H 0.97004 * 119.99709 * 359.97438 * 16 14 13 37 37 H 1.08993 * 113.61229 * 334.57051 * 19 17 16 38 38 H 1.09000 * 113.61263 * 203.66701 * 19 17 16 39 39 H 0.96694 * 117.00544 * 180.02562 * 24 22 20 40 40 H 1.08998 * 113.61879 * 156.33410 * 25 17 16 41 41 H 1.08999 * 113.61887 * 25.42517 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8282 -2.5199 -4.0080 10 1 1.8271 -0.4201 -5.2204 11 1 3.8076 -1.1191 -4.0076 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8775 -0.4908 3.6696 15 8 2.5765 -1.4793 3.7812 16 7 1.4286 0.1449 4.7700 17 6 1.7834 -0.3549 6.1006 18 1 2.0379 -1.4148 6.1017 19 6 2.8073 0.5252 6.8366 20 6 1.6108 1.3145 7.3936 21 1 1.2997 2.1429 6.7571 22 6 1.7701 1.7126 8.8383 23 8 1.2630 1.0450 9.7084 24 8 2.4755 2.8089 9.1586 25 6 0.7767 0.0379 7.1948 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7084 1.1608 -3.4844 33 1 3.1300 -0.7209 1.2496 34 1 1.6766 -1.7490 1.2494 35 1 0.9942 0.7583 2.3564 36 1 0.8713 0.9338 4.6809 37 1 3.4420 1.1079 6.1689 38 1 3.3724 -0.0084 7.6008 39 1 2.5503 3.0238 10.0984 40 1 0.7867 -0.6288 8.0570 41 1 -0.2278 0.2272 6.8164 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590615365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:21 Heat of formation + Delta-G solvation = -131.024463 kcal Electronic energy + Delta-G solvation = -22428.273516 eV Core-core repulsion = 18921.780086 eV Total energy + Delta-G solvation = -3506.493430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88283 -40.91798 -39.26797 -37.98648 -37.03046 -34.99524 -34.11050 -32.42724 -28.10273 -27.51943 -27.35036 -26.76893 -26.37938 -23.06667 -22.19346 -20.61401 -20.20677 -19.73543 -19.02917 -17.91136 -17.66054 -17.10933 -16.75144 -16.57457 -16.43713 -15.80545 -15.31306 -15.08170 -14.71254 -14.57841 -14.37902 -13.95844 -13.62487 -13.42835 -13.14460 -13.05823 -12.85906 -12.64664 -12.59741 -12.53877 -12.21560 -12.11360 -11.78079 -11.72168 -11.44236 -11.37734 -11.31064 -11.10463 -10.67640 -10.37679 -10.24014 -9.64411 -7.99965 -6.15323 1.17218 1.45846 1.47078 1.53331 1.78008 2.16711 2.22443 2.48209 3.23789 3.31347 3.39287 3.45127 3.79833 4.01777 4.41878 4.46214 4.58041 4.60492 4.71428 4.74763 4.79595 4.89587 4.97391 5.03095 5.09456 5.10362 5.15009 5.24588 5.42598 5.61417 5.65220 5.67942 5.70083 5.71444 6.11984 6.19718 6.26002 6.47005 6.89186 7.01075 7.21021 7.52376 7.68191 8.98647 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.043165 B = 0.002823 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.518352 B = 9917.626475 C =10102.322166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.053 3.947 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.725 5.725 14 C 0.699 3.301 15 O -0.640 6.640 16 N -0.714 5.714 17 C 0.136 3.864 18 H 0.090 0.910 19 C -0.130 4.130 20 C -0.105 4.105 21 H 0.147 0.853 22 C 0.495 3.505 23 O -0.549 6.549 24 O -0.513 6.513 25 C -0.114 4.114 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.260 0.740 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.406 0.594 36 H 0.413 0.587 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.426 0.574 40 H 0.105 0.895 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 6.295 19.985 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.380 5.380 14 C 0.399 3.601 15 O -0.522 6.522 16 N -0.370 5.370 17 C 0.029 3.971 18 H 0.108 0.892 19 C -0.169 4.169 20 C -0.124 4.124 21 H 0.165 0.835 22 C 0.339 3.661 23 O -0.440 6.440 24 O -0.326 6.326 25 C -0.152 4.152 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.243 0.757 36 H 0.250 0.750 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.288 0.712 40 H 0.123 0.877 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.764 5.257 19.735 20.437 hybrid contribution 0.033 0.240 -0.487 0.543 sum -0.731 5.497 19.248 20.031 Atomic orbital electron populations 1.21670 0.97103 0.98623 1.00418 1.18345 0.93247 0.93054 0.90154 1.21660 0.97876 0.97795 1.00413 1.21270 1.31722 1.12198 0.91655 0.93762 1.25426 0.95167 0.95592 1.00883 1.69899 1.36965 1.23284 1.23614 0.85850 0.78635 0.78827 0.79682 1.20329 1.20856 1.20288 1.21108 0.96681 0.94641 0.83234 1.45184 1.55778 1.33203 1.03838 1.16160 0.80062 0.82558 0.81304 1.90867 1.44934 1.29776 1.86623 1.44569 1.56275 1.32944 1.03232 1.21583 0.96240 0.98843 0.80439 0.89206 1.23391 0.96003 0.97710 0.99803 1.22669 1.00430 0.99909 0.89362 0.83519 1.23519 0.73151 0.76899 0.92550 1.90716 1.47498 1.53765 1.51975 1.84536 1.67737 1.43740 1.36630 1.23291 0.98961 0.94953 0.98039 0.94251 0.91978 0.96430 0.96397 0.92005 0.94232 0.93054 0.94658 0.94722 0.75690 0.75033 0.89760 0.88350 0.71250 0.87675 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 2 C 0.05 2.38 0.50 -52.93 -0.03 2.36 16 3 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 4 C -0.53 -27.79 8.01 25.60 0.21 -27.58 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.52 5.15 84.65 0.44 1.96 16 7 N -0.90 -47.40 9.35 21.45 0.20 -47.20 16 8 Si 0.94 42.32 29.54 68.60 2.03 44.35 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.17 7.03 4.50 86.38 0.39 7.42 16 13 N -0.72 -23.79 4.96 -478.52 -2.37 -26.16 16 14 C 0.70 22.67 8.57 179.05 1.53 24.20 16 15 O -0.64 -26.78 15.94 -3.98 -0.06 -26.85 16 16 N -0.71 -15.13 5.27 -455.31 -2.40 -17.53 16 17 C 0.14 2.58 4.32 45.52 0.20 2.78 16 18 H 0.09 2.17 7.46 -2.39 -0.02 2.15 16 19 C -0.13 -2.04 7.43 31.12 0.23 -1.81 16 20 C -0.10 -1.32 4.14 -11.01 -0.05 -1.37 16 21 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 22 C 0.49 7.62 7.85 71.23 0.56 8.18 16 23 O -0.55 -11.93 16.66 21.95 0.37 -11.56 16 24 O -0.51 -5.78 13.42 -51.47 -0.69 -6.47 16 25 C -0.11 -1.59 7.15 31.12 0.22 -1.37 16 26 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 27 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 28 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 31 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 32 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 33 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.41 11.17 6.18 -92.71 -0.57 10.60 16 36 H 0.41 5.91 8.72 -92.71 -0.81 5.10 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 39 H 0.43 1.38 9.10 -74.06 -0.67 0.71 16 40 H 0.10 1.63 7.43 -2.39 -0.02 1.62 16 41 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -68.37 336.14 0.95 -67.42 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -0.98 Total: 18.44 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 4.86 Total: 5.56 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -4.57 Total: -90.89 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.39 Total: -44.88 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -68.37 0.95 -67.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.601 kcal (2) G-P(sol) polarization free energy of solvation -68.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds