Wall clock time and date at job start Tue Mar 31 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47181 * 2 1 4 4 C 1.53003 * 109.47256 * 120.00093 * 2 1 3 5 5 N 1.46501 * 109.46747 * 300.00336 * 4 2 1 6 6 C 1.34778 * 120.00088 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99705 * 5.04035 * 6 5 4 8 8 N 1.34766 * 120.00315 * 185.04885 * 6 5 4 9 9 C 1.46506 * 120.00212 * 175.17995 * 8 6 5 10 10 C 1.53000 * 109.47160 * 185.07345 * 9 8 6 11 11 C 1.50699 * 115.54936 * 64.84254 * 10 9 8 12 12 H 1.07998 * 120.00225 * 266.80144 * 11 10 9 13 13 C 1.37876 * 119.99992 * 86.80177 * 11 10 9 14 14 N 1.31512 * 120.00113 * 178.76767 * 13 11 10 15 15 Si 1.86803 * 120.00231 * 358.76783 * 13 11 10 16 16 H 1.48494 * 109.46950 * 91.37253 * 15 13 11 17 17 H 1.48501 * 109.46971 * 211.37510 * 15 13 11 18 18 H 1.48493 * 109.46911 * 331.37778 * 15 13 11 19 19 C 1.52996 * 117.49758 * 279.17155 * 10 9 8 20 20 C 1.52998 * 117.49736 * 210.51032 * 10 9 8 21 21 C 1.50697 * 109.47211 * 239.99814 * 2 1 3 22 22 O 1.20826 * 120.00559 * 240.00210 * 21 2 1 23 23 O 1.34235 * 120.00201 * 60.00230 * 21 2 1 24 24 H 1.09001 * 109.47107 * 300.00266 * 1 2 3 25 25 H 1.09001 * 109.46731 * 60.00204 * 1 2 3 26 26 H 1.09003 * 109.47043 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47267 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47121 * 299.99557 * 3 2 1 29 29 H 1.08995 * 109.47276 * 60.00289 * 3 2 1 30 30 H 1.08990 * 109.47322 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.46797 * 59.99602 * 4 2 1 32 32 H 0.96995 * 120.00412 * 359.97438 * 5 4 2 33 33 H 0.97003 * 119.99896 * 354.90429 * 8 6 5 34 34 H 1.08998 * 109.46889 * 305.07456 * 9 8 6 35 35 H 1.09002 * 109.46788 * 65.07290 * 9 8 6 36 36 H 0.97003 * 120.00717 * 179.97438 * 14 13 11 37 37 H 1.08995 * 117.50225 * 359.97438 * 19 10 9 38 38 H 1.09005 * 117.49670 * 145.02285 * 19 10 9 39 39 H 1.09002 * 117.49893 * 214.98200 * 20 10 9 40 40 H 1.08996 * 117.50087 * 359.97438 * 20 10 9 41 41 H 0.96699 * 117.00521 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5516 -0.0307 2.4454 6 6 1.8776 -0.4908 3.6695 7 8 2.6504 -1.4226 3.7828 8 7 1.3468 0.0818 4.7680 9 6 1.6172 -0.4838 6.0922 10 6 0.8019 0.2699 7.1449 11 6 -0.6944 0.1330 7.0287 12 1 -1.2620 0.8643 6.4724 13 6 -1.3388 -0.9258 7.6325 14 7 -2.6471 -1.0321 7.5516 15 14 -0.3535 -2.2096 8.5656 16 1 -0.2543 -1.8155 9.9939 17 1 -1.0320 -3.5264 8.4614 18 1 1.0091 -2.3072 7.9834 19 6 1.3525 1.6090 7.6393 20 6 1.3941 0.3802 8.5513 21 6 2.0323 -0.7104 -1.2304 22 8 2.7270 -1.6928 -1.1196 23 8 1.7081 -0.2519 -2.4496 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1299 -0.7217 1.2490 31 1 1.6766 -1.7489 1.2492 32 1 0.9942 0.7581 2.3564 33 1 0.7891 0.8708 4.6823 34 1 1.3371 -1.5372 6.1014 35 1 2.6792 -0.3882 6.3182 36 1 -3.1005 -1.7772 7.9761 37 1 2.2958 1.9528 7.2150 38 1 0.6324 2.3908 7.8810 39 1 0.7014 0.3542 9.3925 40 1 2.3642 -0.0845 8.7267 41 1 2.0535 -0.7410 -3.2089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590721719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:35 Heat of formation + Delta-G solvation = -103.239860 kcal Electronic energy + Delta-G solvation = -22779.598544 eV Core-core repulsion = 19274.309945 eV Total energy + Delta-G solvation = -3505.288599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94490 -39.51327 -37.40451 -36.69616 -36.25808 -33.43390 -32.81578 -32.11929 -27.72280 -27.33697 -26.04822 -25.04658 -24.05938 -21.74762 -20.53736 -19.94606 -19.29576 -18.15887 -18.00682 -16.53852 -16.44708 -16.10157 -15.49365 -15.31911 -14.84988 -14.51845 -14.08860 -13.97516 -13.86478 -13.58415 -13.14346 -12.85577 -12.67412 -12.48110 -12.37768 -12.18838 -11.91198 -11.83209 -11.42964 -11.24914 -11.14748 -10.75485 -10.63600 -10.51365 -10.17378 -9.84054 -9.60143 -9.18365 -8.93506 -8.63873 -8.59172 -8.15240 -6.15715 -4.20101 1.90865 2.50396 3.24374 3.30029 3.40375 3.46851 3.70227 4.17084 4.40934 4.42263 4.51018 4.62561 4.91989 5.01952 5.14263 5.25844 5.37087 5.42449 5.50546 5.64270 5.70160 5.77376 5.87676 5.91669 6.02463 6.07719 6.17814 6.27986 6.42145 6.49439 6.63977 6.69867 7.01069 7.08632 7.17976 7.38691 7.58452 7.68318 8.40834 8.52720 8.83840 9.08460 9.47765 10.95573 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.003686 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.696395 B = 7594.843851 C = 7779.827352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.065 4.065 3 C -0.142 4.142 4 C 0.161 3.839 5 N -0.750 5.750 6 C 0.702 3.298 7 O -0.600 6.600 8 N -0.719 5.719 9 C 0.175 3.825 10 C -0.016 4.016 11 C -0.488 4.488 12 H 0.077 0.923 13 C 0.080 3.920 14 N -0.896 5.896 15 Si 0.878 3.122 16 H -0.278 1.278 17 H -0.294 1.294 18 H -0.256 1.256 19 C -0.179 4.179 20 C -0.193 4.193 21 C 0.493 3.507 22 O -0.507 6.507 23 O -0.513 6.513 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.394 0.606 33 H 0.399 0.601 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.265 0.735 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 6.165 -16.369 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.199 4.199 4 C 0.036 3.964 5 N -0.409 5.409 6 C 0.402 3.598 7 O -0.479 6.479 8 N -0.371 5.371 9 C 0.051 3.949 10 C -0.017 4.017 11 C -0.526 4.526 12 H 0.095 0.905 13 C -0.123 4.123 14 N -0.533 5.533 15 Si 0.706 3.294 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.180 1.180 19 C -0.216 4.216 20 C -0.230 4.230 21 C 0.334 3.666 22 O -0.394 6.394 23 O -0.324 6.324 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.229 0.771 33 H 0.232 0.768 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.472 5.089 -15.811 18.213 hybrid contribution 0.057 -0.430 -0.017 0.434 sum 7.529 4.660 -15.827 18.136 Atomic orbital electron populations 1.21913 0.90679 1.03686 1.03845 1.20683 0.98771 0.97218 0.90017 1.21893 1.01900 0.92392 1.03757 1.20859 0.99554 0.95415 0.80564 1.45001 1.57855 1.33733 1.04280 1.15924 0.81098 0.82500 0.80292 1.90893 1.39393 1.31665 1.85956 1.44958 1.53848 1.33038 1.05289 1.21022 0.96353 0.97694 0.79851 1.19633 0.95718 0.95479 0.90858 1.20162 0.86937 1.11056 1.34410 0.90471 1.24954 0.94584 0.97325 0.95409 1.69880 1.07892 1.31337 1.44187 0.86870 0.81375 0.80725 0.80472 1.20444 1.22042 1.17998 1.22839 1.01063 0.92229 1.05457 1.22951 1.01081 1.03313 0.95696 1.23114 0.76794 0.82142 0.84595 1.90772 1.35493 1.25912 1.87182 1.84506 1.72298 1.58951 1.16683 0.90376 0.90836 0.91511 0.91688 0.90815 0.90576 0.90753 0.90775 0.77081 0.76752 0.91797 0.94159 0.92510 0.90879 0.89452 0.89164 0.90710 0.73089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.23 37.16 0.31 -0.88 16 2 C -0.07 -0.61 0.72 -155.66 -0.11 -0.72 16 3 C -0.14 -1.04 8.23 37.16 0.31 -0.74 16 4 C 0.16 2.08 3.86 -4.04 -0.02 2.07 16 5 N -0.75 -10.12 4.96 -65.23 -0.32 -10.44 16 6 C 0.70 12.96 8.55 -86.93 -0.74 12.22 16 7 O -0.60 -13.59 16.36 5.29 0.09 -13.50 16 8 N -0.72 -13.27 5.46 -65.22 -0.36 -13.62 16 9 C 0.17 3.71 5.12 -4.04 -0.02 3.69 16 10 C -0.02 -0.34 0.81 -155.66 -0.13 -0.46 16 11 C -0.49 -12.67 9.29 -34.44 -0.32 -12.99 16 12 H 0.08 2.15 8.06 -52.49 -0.42 1.72 16 13 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 14 N -0.90 -26.36 13.96 55.43 0.77 -25.59 16 15 Si 0.88 21.46 24.88 -169.99 -4.23 17.23 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.26 -6.05 5.73 56.52 0.32 -5.72 16 19 C -0.18 -3.35 9.96 -26.69 -0.27 -3.62 16 20 C -0.19 -3.92 7.60 -26.69 -0.20 -4.12 16 21 C 0.49 4.97 6.92 36.00 0.25 5.22 16 22 O -0.51 -6.92 16.74 -18.75 -0.31 -7.23 16 23 O -0.51 -3.56 13.23 -39.27 -0.52 -4.08 16 24 H 0.08 0.61 6.86 -51.93 -0.36 0.26 16 25 H 0.07 0.51 8.11 -51.93 -0.42 0.08 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.46 8.11 -51.93 -0.42 0.03 16 29 H 0.08 0.50 6.86 -51.93 -0.36 0.15 16 30 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 31 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.39 4.12 6.18 -40.82 -0.25 3.87 16 33 H 0.40 6.58 8.47 -40.82 -0.35 6.23 16 34 H 0.06 1.53 6.65 -51.93 -0.35 1.18 16 35 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 39 H 0.09 1.92 7.27 -51.93 -0.38 1.55 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.41 1.22 9.10 45.56 0.41 1.63 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -34.18 339.32 -6.28 -40.47 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.47 Total: 9.88 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -1.04 Total: 1.78 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.09 Total: -49.65 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.75 Total: -24.81 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.23 Total: 17.23 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.18 -6.28 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590721719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.773 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds