Wall clock time and date at job start Tue Mar 31 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47181 * 2 1 4 4 C 1.53003 * 109.47256 * 120.00093 * 2 1 3 5 5 N 1.46501 * 109.46747 * 300.00336 * 4 2 1 6 6 C 1.34778 * 120.00088 * 180.02562 * 5 4 2 7 7 O 1.21590 * 119.99705 * 5.04035 * 6 5 4 8 8 N 1.34766 * 120.00315 * 185.04885 * 6 5 4 9 9 C 1.46506 * 120.00212 * 175.17995 * 8 6 5 10 10 C 1.53000 * 109.47160 * 185.07345 * 9 8 6 11 11 C 1.50699 * 115.54936 * 64.84254 * 10 9 8 12 12 H 1.07998 * 120.00225 * 266.80144 * 11 10 9 13 13 C 1.37876 * 119.99992 * 86.80177 * 11 10 9 14 14 N 1.31512 * 120.00113 * 178.76767 * 13 11 10 15 15 Si 1.86803 * 120.00231 * 358.76783 * 13 11 10 16 16 H 1.48494 * 109.46950 * 91.37253 * 15 13 11 17 17 H 1.48501 * 109.46971 * 211.37510 * 15 13 11 18 18 H 1.48493 * 109.46911 * 331.37778 * 15 13 11 19 19 C 1.52996 * 117.49758 * 279.17155 * 10 9 8 20 20 C 1.52998 * 117.49736 * 210.51032 * 10 9 8 21 21 C 1.50697 * 109.47211 * 239.99814 * 2 1 3 22 22 O 1.20826 * 120.00559 * 240.00210 * 21 2 1 23 23 O 1.34235 * 120.00201 * 60.00230 * 21 2 1 24 24 H 1.09001 * 109.47107 * 300.00266 * 1 2 3 25 25 H 1.09001 * 109.46731 * 60.00204 * 1 2 3 26 26 H 1.09003 * 109.47043 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47267 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47121 * 299.99557 * 3 2 1 29 29 H 1.08995 * 109.47276 * 60.00289 * 3 2 1 30 30 H 1.08990 * 109.47322 * 179.97438 * 4 2 1 31 31 H 1.09000 * 109.46797 * 59.99602 * 4 2 1 32 32 H 0.96995 * 120.00412 * 359.97438 * 5 4 2 33 33 H 0.97003 * 119.99896 * 354.90429 * 8 6 5 34 34 H 1.08998 * 109.46889 * 305.07456 * 9 8 6 35 35 H 1.09002 * 109.46788 * 65.07290 * 9 8 6 36 36 H 0.97003 * 120.00717 * 179.97438 * 14 13 11 37 37 H 1.08995 * 117.50225 * 359.97438 * 19 10 9 38 38 H 1.09005 * 117.49670 * 145.02285 * 19 10 9 39 39 H 1.09002 * 117.49893 * 214.98200 * 20 10 9 40 40 H 1.08996 * 117.50087 * 359.97438 * 20 10 9 41 41 H 0.96699 * 117.00521 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5516 -0.0307 2.4454 6 6 1.8776 -0.4908 3.6695 7 8 2.6504 -1.4226 3.7828 8 7 1.3468 0.0818 4.7680 9 6 1.6172 -0.4838 6.0922 10 6 0.8019 0.2699 7.1449 11 6 -0.6944 0.1330 7.0287 12 1 -1.2620 0.8643 6.4724 13 6 -1.3388 -0.9258 7.6325 14 7 -2.6471 -1.0321 7.5516 15 14 -0.3535 -2.2096 8.5656 16 1 -0.2543 -1.8155 9.9939 17 1 -1.0320 -3.5264 8.4614 18 1 1.0091 -2.3072 7.9834 19 6 1.3525 1.6090 7.6393 20 6 1.3941 0.3802 8.5513 21 6 2.0323 -0.7104 -1.2304 22 8 2.7270 -1.6928 -1.1196 23 8 1.7081 -0.2519 -2.4496 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1299 -0.7217 1.2490 31 1 1.6766 -1.7489 1.2492 32 1 0.9942 0.7581 2.3564 33 1 0.7891 0.8708 4.6823 34 1 1.3371 -1.5372 6.1014 35 1 2.6792 -0.3882 6.3182 36 1 -3.1005 -1.7772 7.9761 37 1 2.2958 1.9528 7.2150 38 1 0.6324 2.3908 7.8810 39 1 0.7014 0.3542 9.3925 40 1 2.3642 -0.0845 8.7267 41 1 2.0535 -0.7410 -3.2089 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590721719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:35 Heat of formation + Delta-G solvation = -129.840620 kcal Electronic energy + Delta-G solvation = -22780.752039 eV Core-core repulsion = 19274.309945 eV Total energy + Delta-G solvation = -3506.442094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80756 -40.89937 -38.89869 -37.76562 -37.09357 -35.02034 -34.21953 -33.94457 -28.76131 -28.34508 -27.64429 -26.49498 -25.04007 -23.32163 -21.91414 -21.07875 -20.79443 -19.45197 -18.92069 -18.32726 -17.39644 -17.06874 -16.93111 -16.76333 -16.41869 -15.72220 -15.49516 -15.16851 -14.85831 -14.74341 -14.58850 -14.49019 -14.19727 -13.78100 -13.31396 -13.15043 -13.07131 -12.86918 -12.61290 -12.58836 -12.18767 -12.16994 -12.04654 -11.95537 -11.59885 -11.45591 -11.37416 -10.95861 -10.63445 -10.38383 -10.28904 -9.64076 -8.28010 -6.33158 1.12122 1.34354 1.41334 1.49935 1.54720 2.14756 2.25276 2.38219 3.07748 3.16212 3.31614 3.54418 3.66716 3.81560 4.07465 4.25227 4.40119 4.45369 4.51923 4.57235 4.61135 4.73618 4.78901 4.82456 4.87588 4.90305 4.90682 5.13288 5.23834 5.25131 5.33908 5.41601 5.52677 5.56060 5.64377 5.72947 6.08454 6.31170 6.75016 6.93776 7.17983 7.37306 7.63403 8.86420 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.003686 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.696395 B = 7594.843851 C = 7779.827352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.139 4.139 4 C 0.163 3.837 5 N -0.727 5.727 6 C 0.699 3.301 7 O -0.644 6.644 8 N -0.714 5.714 9 C 0.184 3.816 10 C -0.039 4.039 11 C -0.473 4.473 12 H 0.049 0.951 13 C 0.028 3.972 14 N -0.944 5.944 15 Si 0.924 3.076 16 H -0.266 1.266 17 H -0.305 1.305 18 H -0.243 1.243 19 C -0.148 4.148 20 C -0.194 4.194 21 C 0.499 3.501 22 O -0.550 6.550 23 O -0.499 6.499 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.412 0.588 33 H 0.409 0.591 34 H 0.031 0.969 35 H 0.053 0.947 36 H 0.263 0.737 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.074 7.986 -17.157 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 C -0.196 4.196 4 C 0.038 3.962 5 N -0.386 5.386 6 C 0.399 3.601 7 O -0.526 6.526 8 N -0.368 5.368 9 C 0.059 3.941 10 C -0.041 4.041 11 C -0.511 4.511 12 H 0.067 0.933 13 C -0.170 4.170 14 N -0.584 5.584 15 Si 0.751 3.249 16 H -0.192 1.192 17 H -0.233 1.233 18 H -0.166 1.166 19 C -0.185 4.185 20 C -0.232 4.232 21 C 0.342 3.658 22 O -0.441 6.441 23 O -0.312 6.312 24 H 0.102 0.898 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.250 0.750 33 H 0.245 0.755 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 8.624 6.982 -16.650 20.009 hybrid contribution -0.327 -0.918 0.106 0.980 sum 8.297 6.064 -16.545 19.477 Atomic orbital electron populations 1.21939 0.89522 1.03315 1.05197 1.20597 0.99474 0.97912 0.87987 1.21924 1.01706 0.90734 1.05267 1.20803 0.98689 0.94813 0.81900 1.44753 1.57049 1.33814 1.02937 1.16096 0.80690 0.82006 0.81338 1.90864 1.41381 1.33630 1.86727 1.44810 1.54019 1.33290 1.04672 1.20744 0.96737 0.95854 0.80762 1.19446 0.93317 0.98866 0.92440 1.20355 0.89234 1.09321 1.32189 0.93287 1.25645 0.95144 0.99397 0.96830 1.70002 1.09529 1.32396 1.46451 0.86109 0.80641 0.78121 0.80070 1.19171 1.23265 1.16645 1.22877 1.01895 0.90789 1.02945 1.23022 1.01623 1.04379 0.94198 1.23173 0.75791 0.81269 0.85577 1.90768 1.37607 1.27834 1.87860 1.84451 1.71705 1.58702 1.16364 0.89814 0.88693 0.92784 0.92087 0.88838 0.89545 0.92273 0.93283 0.74955 0.75540 0.95032 0.92887 0.92783 0.87775 0.89397 0.90347 0.88484 0.70831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.23 71.98 0.59 -1.47 16 2 C -0.06 -1.00 0.72 -52.93 -0.04 -1.03 16 3 C -0.14 -1.66 8.23 71.98 0.59 -1.07 16 4 C 0.16 4.20 3.86 86.38 0.33 4.53 16 5 N -0.73 -18.90 4.96 -478.54 -2.37 -21.28 16 6 C 0.70 25.42 8.55 179.06 1.53 26.95 16 7 O -0.64 -29.34 16.36 -4.00 -0.07 -29.41 16 8 N -0.71 -25.52 5.46 -478.53 -2.61 -28.13 16 9 C 0.18 7.54 5.12 86.38 0.44 7.98 16 10 C -0.04 -1.65 0.81 -52.93 -0.04 -1.69 16 11 C -0.47 -24.52 9.29 25.60 0.24 -24.29 16 12 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 13 C 0.03 1.55 5.47 84.65 0.46 2.01 16 14 N -0.94 -56.85 13.96 21.45 0.30 -56.55 16 15 Si 0.92 44.24 24.88 68.60 1.71 45.94 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 17 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 18 H -0.24 -11.04 5.73 99.48 0.57 -10.47 16 19 C -0.15 -5.05 9.96 30.62 0.30 -4.75 16 20 C -0.19 -7.34 7.60 30.62 0.23 -7.11 16 21 C 0.50 9.47 6.92 71.23 0.49 9.96 16 22 O -0.55 -15.07 16.74 21.96 0.37 -14.71 16 23 O -0.50 -5.69 13.23 -51.46 -0.68 -6.37 16 24 H 0.08 1.12 6.86 -2.39 -0.02 1.10 16 25 H 0.09 1.00 8.11 -2.39 -0.02 0.98 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.09 0.80 8.11 -2.39 -0.02 0.78 16 29 H 0.09 0.86 6.86 -2.39 -0.02 0.84 16 30 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 31 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.41 7.77 6.18 -92.71 -0.57 7.20 16 33 H 0.41 12.80 8.47 -92.71 -0.79 12.02 16 34 H 0.03 1.49 6.65 -2.39 -0.02 1.47 16 35 H 0.05 2.05 8.09 -2.39 -0.02 2.03 16 36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 39 H 0.08 3.16 7.27 -2.39 -0.02 3.14 16 40 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.43 1.52 9.10 -74.06 -0.67 0.84 16 Total: -1.00 -75.77 339.32 0.68 -75.09 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -1.10 Total: 25.37 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.14 Total: 10.04 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -4.69 Total: -105.96 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -0.38 Total: -50.48 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.71 Total: 45.94 kcal Total: -75.77 0.68 -75.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590721719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.749 kcal (2) G-P(sol) polarization free energy of solvation -75.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds