Wall clock time and date at job start Tue Mar 31 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47313 * 2 1 4 4 N 1.46509 * 109.46852 * 240.00230 * 2 1 3 5 5 C 1.46766 * 124.34639 * 239.99870 * 4 2 1 6 6 C 1.54478 * 105.46992 * 197.01564 * 5 4 2 7 7 C 1.54628 * 101.76748 * 334.58722 * 6 5 4 8 8 H 1.09001 * 110.48563 * 265.98994 * 7 6 5 9 9 N 1.46495 * 110.48755 * 143.47648 * 7 6 5 10 10 C 1.36939 * 119.99988 * 302.26559 * 9 7 6 11 11 H 1.08001 * 119.99966 * 321.81395 * 10 9 7 12 12 C 1.38808 * 120.00163 * 141.81854 * 10 9 7 13 13 N 1.31623 * 119.99968 * 339.26695 * 12 10 9 14 14 Si 1.86795 * 120.00279 * 159.25978 * 12 10 9 15 15 H 1.48502 * 109.47255 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46987 * 120.00316 * 14 12 10 17 17 H 1.48504 * 109.47683 * 240.00165 * 14 12 10 18 18 C 1.46506 * 120.00105 * 122.26926 * 9 7 6 19 19 C 1.52997 * 109.47106 * 89.99703 * 18 9 7 20 20 C 1.50704 * 109.46878 * 179.97438 * 19 18 9 21 21 O 1.20824 * 120.00188 * 0.02562 * 20 19 18 22 22 O 1.34234 * 119.99627 * 180.02562 * 20 19 18 23 23 C 1.34412 * 124.34889 * 59.70252 * 4 2 1 24 24 O 1.21280 * 124.94377 * 359.56914 * 23 4 2 25 25 H 1.08999 * 109.46858 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46905 * 299.99491 * 1 2 3 27 27 H 1.08994 * 109.47506 * 59.99650 * 1 2 3 28 28 H 1.09004 * 109.47673 * 120.00270 * 2 1 3 29 29 H 1.09003 * 109.46719 * 60.00395 * 3 2 1 30 30 H 1.08995 * 109.47314 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47206 * 300.00234 * 3 2 1 32 32 H 1.08995 * 110.24846 * 316.01646 * 5 4 2 33 33 H 1.09001 * 110.24365 * 77.93219 * 5 4 2 34 34 H 1.09004 * 110.96765 * 92.70543 * 6 5 4 35 35 H 1.09001 * 110.97219 * 216.46606 * 6 5 4 36 36 H 0.97003 * 120.00114 * 180.02562 * 13 12 10 37 37 H 1.08994 * 109.47125 * 209.99654 * 18 9 7 38 38 H 1.08997 * 109.46606 * 329.99993 * 18 9 7 39 39 H 1.09004 * 109.47062 * 299.99925 * 19 18 9 40 40 H 1.09006 * 109.47263 * 60.00417 * 19 18 9 41 41 H 0.96698 * 116.99627 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.8655 -1.8888 -1.1729 6 6 3.4722 -1.9922 -2.5897 7 6 2.4202 -1.2416 -3.4388 8 1 1.6980 -1.9421 -3.8580 9 7 3.0723 -0.4791 -4.5063 10 6 4.0148 0.4646 -4.1962 11 1 3.8869 1.0896 -3.3248 12 6 5.1347 0.6179 -5.0019 13 7 5.5130 -0.3610 -5.7963 14 14 6.1049 2.2136 -4.9590 15 1 5.4779 3.1482 -3.9901 16 1 7.5020 1.9323 -4.5415 17 1 6.1065 2.8286 -6.3106 18 6 2.7158 -0.7262 -5.9057 19 6 1.5590 0.1912 -6.3069 20 6 1.1928 -0.0626 -7.7466 21 8 1.7949 -0.8923 -8.3860 22 8 0.1976 0.6333 -8.3186 23 6 1.7432 -0.3116 -2.4562 24 8 1.0546 0.6391 -2.7609 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9562 0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.6563 -1.7772 -0.4312 33 1 2.2647 -2.7713 -0.9530 34 1 4.4400 -1.4930 -2.6371 35 1 3.5561 -3.0328 -2.9032 36 1 6.2958 -0.2540 -6.3591 37 1 3.5776 -0.5233 -6.5414 38 1 2.4129 -1.7664 -6.0252 39 1 0.6971 -0.0117 -5.6712 40 1 1.8619 1.2314 -6.1874 41 1 -0.0011 0.4352 -9.2440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591619056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:42 Heat of formation + Delta-G solvation = -107.219786 kcal Electronic energy + Delta-G solvation = -23960.308676 eV Core-core repulsion = 20454.847494 eV Total energy + Delta-G solvation = -3505.461181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.93777 -39.59555 -36.14459 -35.64947 -35.51867 -33.87661 -31.59322 -30.28920 -28.30070 -26.96751 -26.32396 -24.83406 -22.62586 -21.76114 -20.80838 -19.88144 -18.31414 -17.61201 -16.79487 -16.02036 -15.78204 -15.62370 -15.42763 -14.89514 -14.46733 -13.88760 -13.56895 -13.38203 -13.16304 -12.98115 -12.67649 -12.48509 -12.31348 -12.24316 -11.77712 -11.66374 -11.37847 -11.22297 -11.05957 -11.00770 -10.92702 -10.83852 -10.80699 -10.43851 -10.11077 -10.03506 -9.89672 -9.74372 -8.98985 -8.49258 -8.15848 -6.67785 -5.88342 -3.48752 2.81122 3.30272 3.34028 3.41721 3.46460 3.55275 3.66328 4.42358 4.92297 5.16774 5.22911 5.27329 5.37325 5.39300 5.53525 5.66746 5.75225 5.79008 5.84540 5.92742 5.99745 6.04488 6.04597 6.07983 6.12279 6.34562 6.42917 6.54610 6.56620 6.61662 6.89105 7.01475 7.04225 7.20411 7.65955 7.77210 7.79374 8.38846 8.47067 9.00396 9.06815 9.66551 10.23908 11.11714 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.006995 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.087248 B = 4002.130616 C = 5090.938073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 C -0.166 4.166 4 N -0.625 5.625 5 C 0.108 3.892 6 C -0.139 4.139 7 C 0.141 3.859 8 H 0.084 0.916 9 N -0.554 5.554 10 C -0.261 4.261 11 H 0.060 0.940 12 C 0.020 3.980 13 N -0.877 5.877 14 Si 0.894 3.106 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.286 1.286 18 C 0.161 3.839 19 C -0.131 4.131 20 C 0.478 3.522 21 O -0.520 6.520 22 O -0.527 6.527 23 C 0.513 3.487 24 O -0.528 6.528 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.257 0.743 37 H 0.107 0.893 38 H 0.036 0.964 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.441 -2.521 7.402 10.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 C -0.224 4.224 4 N -0.362 5.362 5 C -0.016 4.016 6 C -0.179 4.179 7 C 0.030 3.970 8 H 0.102 0.898 9 N -0.272 5.272 10 C -0.390 4.390 11 H 0.078 0.922 12 C -0.182 4.182 13 N -0.518 5.518 14 Si 0.723 3.277 15 H -0.199 1.199 16 H -0.215 1.215 17 H -0.213 1.213 18 C 0.034 3.966 19 C -0.171 4.171 20 C 0.321 3.679 21 O -0.408 6.408 22 O -0.338 6.338 23 C 0.300 3.700 24 O -0.403 6.403 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.125 0.875 38 H 0.054 0.946 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.404 -2.137 7.412 10.692 hybrid contribution 0.420 0.710 -0.523 0.977 sum -6.984 -1.427 6.888 9.913 Atomic orbital electron populations 1.22164 0.95428 1.01807 1.02885 1.20785 0.93901 0.93121 0.87058 1.22155 1.01431 0.96093 1.02700 1.48444 1.52263 1.29430 1.06023 1.22038 0.93212 0.86735 0.99613 1.23017 1.01861 1.01198 0.91807 1.21089 0.94208 0.91884 0.89848 0.89819 1.43548 1.42508 1.42020 0.99164 1.18903 0.97929 1.09778 1.12424 0.92215 1.25194 0.95940 0.97159 0.99887 1.69998 1.24864 1.29489 1.27439 0.86367 0.79549 0.83930 0.77815 1.19938 1.21499 1.21266 1.20854 0.95407 0.93634 0.86685 1.22365 1.02788 1.06034 0.85922 1.24299 0.75412 0.77031 0.91206 1.90675 1.51385 1.33572 1.65169 1.84653 1.52971 1.63929 1.32287 1.22077 0.79142 0.85234 0.83584 1.90560 1.39306 1.28935 1.81523 0.92938 0.92213 0.90908 0.90449 0.92386 0.92503 0.90828 0.91647 0.92495 0.88149 0.90784 0.93296 0.87520 0.94566 0.89194 0.87996 0.74643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.19 37.16 0.34 -1.80 16 2 C 0.15 2.15 3.47 -67.93 -0.24 1.91 16 3 C -0.17 -2.44 9.20 37.16 0.34 -2.10 16 4 N -0.62 -10.20 2.83 -164.84 -0.47 -10.67 16 5 C 0.11 1.51 7.30 -3.12 -0.02 1.49 16 6 C -0.14 -2.40 6.76 -25.10 -0.17 -2.57 16 7 C 0.14 2.81 3.45 -67.94 -0.23 2.58 16 8 H 0.08 1.54 7.86 -51.93 -0.41 1.14 16 9 N -0.55 -12.99 2.45 -165.68 -0.41 -13.39 16 10 C -0.26 -6.74 7.92 -15.06 -0.12 -6.86 16 11 H 0.06 1.63 7.55 -52.49 -0.40 1.24 16 12 C 0.02 0.52 4.97 -17.43 -0.09 0.44 16 13 N -0.88 -24.10 11.47 55.49 0.64 -23.47 16 14 Si 0.89 21.19 29.60 -169.99 -5.03 16.15 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 18 C 0.16 3.71 4.56 -4.04 -0.02 3.69 16 19 C -0.13 -2.67 6.14 -27.88 -0.17 -2.84 16 20 C 0.48 9.07 8.33 36.01 0.30 9.37 16 21 O -0.52 -11.23 16.74 -18.75 -0.31 -11.54 16 22 O -0.53 -8.09 13.42 -39.27 -0.53 -8.62 16 23 C 0.51 10.22 6.21 -10.86 -0.07 10.15 16 24 O -0.53 -12.01 15.11 5.56 0.08 -11.92 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.15 6.75 -51.93 -0.35 0.80 16 28 H 0.08 0.88 8.07 -51.93 -0.42 0.47 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.32 6.82 -51.93 -0.35 0.97 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 2.06 7.12 -51.93 -0.37 1.69 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.11 2.84 5.49 -51.93 -0.29 2.55 16 38 H 0.04 0.81 7.90 -51.93 -0.41 0.40 16 39 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 40 H 0.10 2.20 8.14 -51.93 -0.42 1.77 16 41 H 0.40 4.12 9.10 45.56 0.41 4.53 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -31.35 338.70 -6.58 -37.93 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.52 Total: 6.96 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: -0.14 Total: 13.46 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.24 Total: -47.53 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.76 Total: -32.08 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.35 -6.58 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591619056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.287 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds