Wall clock time and date at job start Tue Mar 31 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47313 * 2 1 4 4 N 1.46509 * 109.46852 * 240.00230 * 2 1 3 5 5 C 1.46766 * 124.34639 * 239.99870 * 4 2 1 6 6 C 1.54478 * 105.46992 * 197.01564 * 5 4 2 7 7 C 1.54628 * 101.76748 * 334.58722 * 6 5 4 8 8 H 1.09001 * 110.48563 * 265.98994 * 7 6 5 9 9 N 1.46495 * 110.48755 * 143.47648 * 7 6 5 10 10 C 1.36939 * 119.99988 * 302.26559 * 9 7 6 11 11 H 1.08001 * 119.99966 * 321.81395 * 10 9 7 12 12 C 1.38808 * 120.00163 * 141.81854 * 10 9 7 13 13 N 1.31623 * 119.99968 * 339.26695 * 12 10 9 14 14 Si 1.86795 * 120.00279 * 159.25978 * 12 10 9 15 15 H 1.48502 * 109.47255 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46987 * 120.00316 * 14 12 10 17 17 H 1.48504 * 109.47683 * 240.00165 * 14 12 10 18 18 C 1.46506 * 120.00105 * 122.26926 * 9 7 6 19 19 C 1.52997 * 109.47106 * 89.99703 * 18 9 7 20 20 C 1.50704 * 109.46878 * 179.97438 * 19 18 9 21 21 O 1.20824 * 120.00188 * 0.02562 * 20 19 18 22 22 O 1.34234 * 119.99627 * 180.02562 * 20 19 18 23 23 C 1.34412 * 124.34889 * 59.70252 * 4 2 1 24 24 O 1.21280 * 124.94377 * 359.56914 * 23 4 2 25 25 H 1.08999 * 109.46858 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46905 * 299.99491 * 1 2 3 27 27 H 1.08994 * 109.47506 * 59.99650 * 1 2 3 28 28 H 1.09004 * 109.47673 * 120.00270 * 2 1 3 29 29 H 1.09003 * 109.46719 * 60.00395 * 3 2 1 30 30 H 1.08995 * 109.47314 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47206 * 300.00234 * 3 2 1 32 32 H 1.08995 * 110.24846 * 316.01646 * 5 4 2 33 33 H 1.09001 * 110.24365 * 77.93219 * 5 4 2 34 34 H 1.09004 * 110.96765 * 92.70543 * 6 5 4 35 35 H 1.09001 * 110.97219 * 216.46606 * 6 5 4 36 36 H 0.97003 * 120.00114 * 180.02562 * 13 12 10 37 37 H 1.08994 * 109.47125 * 209.99654 * 18 9 7 38 38 H 1.08997 * 109.46606 * 329.99993 * 18 9 7 39 39 H 1.09004 * 109.47062 * 299.99925 * 19 18 9 40 40 H 1.09006 * 109.47263 * 60.00417 * 19 18 9 41 41 H 0.96698 * 116.99627 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.8655 -1.8888 -1.1729 6 6 3.4722 -1.9922 -2.5897 7 6 2.4202 -1.2416 -3.4388 8 1 1.6980 -1.9421 -3.8580 9 7 3.0723 -0.4791 -4.5063 10 6 4.0148 0.4646 -4.1962 11 1 3.8869 1.0896 -3.3248 12 6 5.1347 0.6179 -5.0019 13 7 5.5130 -0.3610 -5.7963 14 14 6.1049 2.2136 -4.9590 15 1 5.4779 3.1482 -3.9901 16 1 7.5020 1.9323 -4.5415 17 1 6.1065 2.8286 -6.3106 18 6 2.7158 -0.7262 -5.9057 19 6 1.5590 0.1912 -6.3069 20 6 1.1928 -0.0626 -7.7466 21 8 1.7949 -0.8923 -8.3860 22 8 0.1976 0.6333 -8.3186 23 6 1.7432 -0.3116 -2.4562 24 8 1.0546 0.6391 -2.7609 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9562 0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.6563 -1.7772 -0.4312 33 1 2.2647 -2.7713 -0.9530 34 1 4.4400 -1.4930 -2.6371 35 1 3.5561 -3.0328 -2.9032 36 1 6.2958 -0.2540 -6.3591 37 1 3.5776 -0.5233 -6.5414 38 1 2.4129 -1.7664 -6.0252 39 1 0.6971 -0.0117 -5.6712 40 1 1.8619 1.2314 -6.1874 41 1 -0.0011 0.4352 -9.2440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591619056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:41 Heat of formation + Delta-G solvation = -128.077835 kcal Electronic energy + Delta-G solvation = -23961.213149 eV Core-core repulsion = 20454.847494 eV Total energy + Delta-G solvation = -3506.365654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39196 -41.10055 -37.77410 -37.13979 -36.99412 -35.27176 -33.51473 -31.88926 -29.76434 -28.06783 -27.87903 -26.65989 -24.21010 -23.03665 -22.28712 -21.56703 -19.77319 -19.13678 -18.43826 -17.56807 -17.27078 -17.23503 -16.93460 -16.52110 -16.02487 -15.47417 -15.05801 -14.82990 -14.53220 -14.41283 -14.14507 -14.00054 -13.86250 -13.61958 -13.32478 -13.01999 -12.92330 -12.78006 -12.62043 -12.53300 -12.49207 -12.23358 -12.11405 -12.03871 -11.90445 -11.68076 -11.58360 -11.52122 -10.70299 -10.31773 -9.45722 -8.58158 -7.87155 -5.50360 1.26271 1.39492 1.45444 1.53991 1.83041 2.21744 2.28665 2.49342 3.20892 3.61779 3.74936 4.01021 4.13449 4.18705 4.26055 4.30332 4.35018 4.40011 4.41849 4.66582 4.73521 4.74884 4.77991 4.85545 4.88659 4.95671 4.96925 5.16597 5.26810 5.31708 5.36953 5.54016 5.60270 5.66464 5.79388 5.97157 6.39226 6.43439 7.04935 7.11615 7.52799 7.75268 8.29192 9.08890 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.006995 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.087248 B = 4002.130616 C = 5090.938073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 C -0.162 4.162 4 N -0.621 5.621 5 C 0.113 3.887 6 C -0.132 4.132 7 C 0.129 3.871 8 H 0.097 0.903 9 N -0.568 5.568 10 C -0.250 4.250 11 H 0.040 0.960 12 C -0.020 4.020 13 N -0.902 5.902 14 Si 0.943 3.057 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.290 1.290 18 C 0.166 3.834 19 C -0.121 4.121 20 C 0.491 3.509 21 O -0.548 6.548 22 O -0.514 6.514 23 C 0.506 3.494 24 O -0.566 6.566 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.036 0.964 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.253 0.747 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.427 -3.292 9.287 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 C -0.220 4.220 4 N -0.356 5.356 5 C -0.010 4.010 6 C -0.172 4.172 7 C 0.018 3.982 8 H 0.115 0.885 9 N -0.287 5.287 10 C -0.381 4.381 11 H 0.057 0.943 12 C -0.219 4.219 13 N -0.545 5.545 14 Si 0.772 3.228 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.216 1.216 18 C 0.039 3.961 19 C -0.161 4.161 20 C 0.335 3.665 21 O -0.439 6.439 22 O -0.327 6.327 23 C 0.293 3.707 24 O -0.445 6.445 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.056 0.944 28 H 0.135 0.865 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -8.410 -2.919 9.329 12.895 hybrid contribution 0.624 0.956 -1.084 1.574 sum -7.787 -1.963 8.245 11.510 Atomic orbital electron populations 1.22092 0.94607 1.02391 1.02448 1.21110 0.94616 0.92596 0.87136 1.22119 1.00678 0.96957 1.02225 1.48556 1.51544 1.29808 1.05661 1.22200 0.93935 0.87096 0.97743 1.22875 0.99223 1.01322 0.93767 1.21363 0.95079 0.92209 0.89532 0.88537 1.43611 1.42577 1.42442 1.00048 1.18747 0.98004 1.09856 1.11444 0.94269 1.25671 0.96895 0.99159 1.00208 1.70095 1.25303 1.30680 1.28380 0.85604 0.78648 0.81302 0.77259 1.20195 1.21046 1.21639 1.20612 0.94916 0.94255 0.86304 1.22043 1.02147 1.04331 0.87596 1.23764 0.75624 0.76633 0.90503 1.90676 1.52601 1.34950 1.65641 1.84560 1.51129 1.62656 1.34373 1.21979 0.78949 0.84809 0.84966 1.90537 1.41073 1.30461 1.82392 0.91807 0.89529 0.94433 0.86491 0.89269 0.93525 0.94850 0.89440 0.88696 0.91775 0.88851 0.93727 0.90935 0.94287 0.88334 0.89482 0.71583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 9.19 71.98 0.66 -3.03 16 2 C 0.15 3.67 3.47 44.99 0.16 3.82 16 3 C -0.16 -4.55 9.20 71.98 0.66 -3.88 16 4 N -0.62 -19.02 2.83 -794.03 -2.25 -21.27 16 5 C 0.11 2.79 7.30 86.83 0.63 3.43 16 6 C -0.13 -4.41 6.76 31.65 0.21 -4.20 16 7 C 0.13 5.10 3.45 44.99 0.16 5.25 16 8 H 0.10 3.50 7.86 -2.39 -0.02 3.48 16 9 N -0.57 -27.22 2.45 -678.08 -1.66 -28.88 16 10 C -0.25 -13.32 7.92 84.03 0.67 -12.65 16 11 H 0.04 2.23 7.55 -2.91 -0.02 2.21 16 12 C -0.02 -1.11 4.97 84.86 0.42 -0.68 16 13 N -0.90 -50.99 11.47 21.65 0.25 -50.74 16 14 Si 0.94 44.59 29.60 68.60 2.03 46.62 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 17 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 18 C 0.17 7.84 4.56 86.38 0.39 8.23 16 19 C -0.12 -5.00 6.14 29.85 0.18 -4.82 16 20 C 0.49 18.43 8.33 71.24 0.59 19.03 16 21 O -0.55 -23.63 16.74 21.97 0.37 -23.26 16 22 O -0.51 -14.84 13.42 -51.46 -0.69 -15.53 16 23 C 0.51 20.08 6.21 87.90 0.55 20.63 16 24 O -0.57 -26.33 15.11 -3.03 -0.05 -26.37 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.16 6.75 -2.39 -0.02 1.14 16 28 H 0.12 2.08 8.07 -2.39 -0.02 2.06 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.03 1.20 6.82 -2.38 -0.02 1.18 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 2.63 7.12 -2.38 -0.02 2.62 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.07 4.00 5.49 -2.39 -0.01 3.98 16 38 H 0.04 1.77 7.90 -2.39 -0.02 1.75 16 39 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 40 H 0.09 3.86 8.14 -2.38 -0.02 3.84 16 41 H 0.42 7.72 9.10 -74.06 -0.67 7.04 16 Total: -1.00 -71.07 338.70 3.65 -67.42 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.36 Total: 20.89 kcal Atomic # 6 Polarization: 25.84 SS G_CDS: 5.29 Total: 31.13 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.66 Total: -100.89 kcal Atomic # 8 Polarization: -64.80 SS G_CDS: -0.37 Total: -65.17 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -71.07 3.65 -67.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591619056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.659 kcal (2) G-P(sol) polarization free energy of solvation -71.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds