Wall clock time and date at job start Tue Mar 31 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 N 1.46492 * 109.47569 * 120.00128 * 2 1 3 5 5 C 1.46764 * 124.35153 * 119.99626 * 4 2 1 6 6 C 1.54478 * 105.47430 * 162.98958 * 5 4 2 7 7 C 1.54623 * 101.76601 * 25.41595 * 6 5 4 8 8 H 1.09011 * 110.48329 * 94.01597 * 7 6 5 9 9 N 1.46501 * 110.48890 * 216.52362 * 7 6 5 10 10 C 1.36935 * 120.00057 * 57.73188 * 9 7 6 11 11 H 1.08007 * 119.99610 * 37.19459 * 10 9 7 12 12 C 1.38809 * 120.00473 * 217.20166 * 10 9 7 13 13 N 1.31624 * 119.99502 * 21.22851 * 12 10 9 14 14 Si 1.86799 * 120.00390 * 201.23208 * 12 10 9 15 15 H 1.48502 * 109.47240 * 89.99435 * 14 12 10 16 16 H 1.48496 * 109.47277 * 209.99742 * 14 12 10 17 17 H 1.48499 * 109.46759 * 329.99716 * 14 12 10 18 18 C 1.46497 * 120.00090 * 237.72960 * 9 7 6 19 19 C 1.53000 * 109.47332 * 269.99945 * 18 9 7 20 20 C 1.50699 * 109.46937 * 180.02562 * 19 18 9 21 21 O 1.20827 * 120.00623 * 359.97438 * 20 19 18 22 22 O 1.34233 * 119.99748 * 180.28056 * 20 19 18 23 23 C 1.34659 * 124.31560 * 300.13650 * 4 2 1 24 24 O 1.21281 * 125.06846 * 0.39919 * 23 4 2 25 25 H 1.09002 * 109.47515 * 299.99597 * 1 2 3 26 26 H 1.08997 * 109.47426 * 59.99959 * 1 2 3 27 27 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47191 * 240.00841 * 2 1 3 29 29 H 1.09003 * 109.47422 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47631 * 300.00319 * 3 2 1 31 31 H 1.09009 * 109.46893 * 60.00586 * 3 2 1 32 32 H 1.08998 * 110.24352 * 43.99076 * 5 4 2 33 33 H 1.09002 * 110.31967 * 282.02923 * 5 4 2 34 34 H 1.09006 * 110.96784 * 267.29788 * 6 5 4 35 35 H 1.08996 * 111.00355 * 143.55481 * 6 5 4 36 36 H 0.97004 * 119.99741 * 180.02562 * 13 12 10 37 37 H 1.09008 * 109.47254 * 149.99881 * 18 9 7 38 38 H 1.09007 * 109.47024 * 30.00592 * 18 9 7 39 39 H 1.09001 * 109.46778 * 60.00110 * 19 18 9 40 40 H 1.08994 * 109.47298 * 300.00197 * 19 18 9 41 41 H 0.96701 * 117.00095 * 179.72615 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8656 -1.8888 1.1726 6 6 3.4724 -1.9923 2.5894 7 6 2.4204 -1.2418 3.4385 8 1 1.6982 -1.9425 3.8578 9 7 3.0725 -0.4794 4.5062 10 6 4.0150 0.4643 4.1962 11 1 3.8950 1.0785 3.3159 12 6 5.1247 0.6316 5.0131 13 7 5.5031 -0.3402 5.8162 14 14 6.0811 2.2356 4.9728 15 1 5.5132 3.1758 5.9722 16 1 7.5060 1.9707 5.2962 17 1 5.9843 2.8357 3.6179 18 6 2.7161 -0.7265 5.9055 19 6 1.5592 0.1908 6.3069 20 6 1.1931 -0.0630 7.7465 21 8 1.7952 -0.8929 8.3858 22 8 0.1939 0.6284 8.3168 23 6 1.7450 -0.3085 2.4581 24 8 1.0597 0.6439 2.7648 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.6564 -1.7770 0.4308 33 1 2.2658 -2.7722 0.9536 34 1 4.4402 -1.4930 2.6367 35 1 3.5568 -3.0327 2.9032 36 1 6.2783 -0.2233 6.3873 37 1 3.5780 -0.5237 6.5413 38 1 2.4133 -1.7668 6.0250 39 1 0.6974 -0.0120 5.6711 40 1 1.8621 1.2310 6.1874 41 1 -0.0070 0.4279 9.2412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591619057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:45 Heat of formation + Delta-G solvation = -107.145786 kcal Electronic energy + Delta-G solvation = -23962.525563 eV Core-core repulsion = 20457.067590 eV Total energy + Delta-G solvation = -3505.457973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92298 -39.59079 -36.14600 -35.65867 -35.51638 -33.87783 -31.58531 -30.28937 -28.29568 -26.96835 -26.32497 -24.83559 -22.62176 -21.76173 -20.80511 -19.87792 -18.31884 -17.61065 -16.79466 -16.02177 -15.78074 -15.61923 -15.42474 -14.89633 -14.46882 -13.88875 -13.56824 -13.38209 -13.16872 -12.98408 -12.67714 -12.48217 -12.31671 -12.23887 -11.77920 -11.66570 -11.37932 -11.22263 -11.06095 -11.00558 -10.91356 -10.84891 -10.80714 -10.44848 -10.10557 -10.03318 -9.89166 -9.75099 -8.99559 -8.48831 -8.15604 -6.69256 -5.88050 -3.47649 2.81407 3.31024 3.34466 3.41842 3.44653 3.54807 3.66455 4.42466 4.92107 5.16583 5.22534 5.27227 5.37271 5.39236 5.53474 5.66571 5.74992 5.78887 5.84629 5.92639 5.99590 6.04289 6.04728 6.07932 6.12044 6.34759 6.42648 6.54448 6.56695 6.61479 6.89210 7.01335 7.04175 7.20431 7.66864 7.76230 7.79039 8.38375 8.47065 8.99808 9.06704 9.66821 10.23505 11.11923 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.006985 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.546915 B = 4007.512981 C = 5086.052731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 C -0.166 4.166 4 N -0.626 5.626 5 C 0.108 3.892 6 C -0.139 4.139 7 C 0.141 3.859 8 H 0.084 0.916 9 N -0.554 5.554 10 C -0.261 4.261 11 H 0.061 0.939 12 C 0.019 3.981 13 N -0.877 5.877 14 Si 0.896 3.104 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.277 1.277 18 C 0.159 3.841 19 C -0.131 4.131 20 C 0.478 3.522 21 O -0.520 6.520 22 O -0.527 6.527 23 C 0.513 3.487 24 O -0.527 6.527 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.258 0.742 37 H 0.109 0.891 38 H 0.036 0.964 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.427 -2.582 -7.442 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.051 3.949 3 C -0.224 4.224 4 N -0.363 5.363 5 C -0.015 4.015 6 C -0.179 4.179 7 C 0.029 3.971 8 H 0.102 0.898 9 N -0.273 5.273 10 C -0.390 4.390 11 H 0.078 0.922 12 C -0.182 4.182 13 N -0.518 5.518 14 Si 0.726 3.274 15 H -0.211 1.211 16 H -0.216 1.216 17 H -0.202 1.202 18 C 0.033 3.967 19 C -0.171 4.171 20 C 0.321 3.679 21 O -0.408 6.408 22 O -0.338 6.338 23 C 0.300 3.700 24 O -0.402 6.402 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.054 0.946 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.383 -2.200 -7.451 10.718 hybrid contribution 0.393 0.733 0.519 0.980 sum -6.990 -1.467 -6.933 9.954 Atomic orbital electron populations 1.22163 0.95438 1.01806 1.02870 1.20779 0.93890 0.93115 0.87079 1.22158 1.01432 0.96105 1.02700 1.48501 1.52390 1.29394 1.05997 1.22026 0.93199 0.86741 0.99583 1.23017 1.01845 1.01205 0.91839 1.21096 0.94243 0.91890 0.89838 0.89775 1.43558 1.42507 1.41987 0.99199 1.18886 0.98481 1.10095 1.11568 0.92182 1.25168 0.95922 0.97231 0.99929 1.69989 1.25324 1.29666 1.26839 0.86398 0.78853 0.83945 0.78243 1.21126 1.21630 1.20199 1.20878 0.95517 0.93613 0.86702 1.22358 1.02781 1.06039 0.85913 1.24297 0.75441 0.77019 0.91180 1.90676 1.51528 1.33483 1.65115 1.84653 1.52666 1.64099 1.32429 1.22131 0.79054 0.85258 0.83536 1.90561 1.39373 1.28855 1.81400 0.90938 0.92210 0.92932 0.90455 0.92509 0.92385 0.90831 0.91661 0.92493 0.88166 0.90771 0.93242 0.87365 0.94586 0.89211 0.88010 0.74644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.19 37.15 0.34 -1.80 16 2 C 0.15 2.14 3.48 -67.94 -0.24 1.91 16 3 C -0.17 -2.44 9.20 37.16 0.34 -2.10 16 4 N -0.63 -10.21 2.84 -164.79 -0.47 -10.68 16 5 C 0.11 1.52 7.30 -3.12 -0.02 1.50 16 6 C -0.14 -2.40 6.76 -25.10 -0.17 -2.57 16 7 C 0.14 2.80 3.45 -67.95 -0.23 2.57 16 8 H 0.08 1.55 7.86 -51.92 -0.41 1.14 16 9 N -0.55 -12.99 2.45 -165.67 -0.41 -13.39 16 10 C -0.26 -6.74 7.93 -15.06 -0.12 -6.86 16 11 H 0.06 1.64 7.54 -52.48 -0.40 1.24 16 12 C 0.02 0.50 4.96 -17.43 -0.09 0.42 16 13 N -0.88 -24.12 11.43 55.49 0.63 -23.49 16 14 Si 0.90 21.25 29.60 -169.99 -5.03 16.22 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.16 3.68 4.56 -4.04 -0.02 3.66 16 19 C -0.13 -2.67 6.14 -27.88 -0.17 -2.84 16 20 C 0.48 9.10 8.33 36.01 0.30 9.40 16 21 O -0.52 -11.25 16.74 -18.75 -0.31 -11.56 16 22 O -0.53 -8.12 13.42 -39.27 -0.53 -8.64 16 23 C 0.51 10.22 6.19 -10.75 -0.07 10.16 16 24 O -0.53 -11.97 15.14 5.56 0.08 -11.88 16 25 H 0.07 1.15 6.77 -51.93 -0.35 0.80 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.88 8.07 -51.93 -0.42 0.47 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.32 6.81 -51.92 -0.35 0.96 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 2.05 7.12 -51.93 -0.37 1.68 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.11 2.88 5.44 -51.92 -0.28 2.60 16 38 H 0.04 0.80 7.91 -51.93 -0.41 0.39 16 39 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.10 2.20 8.14 -51.93 -0.42 1.78 16 41 H 0.40 4.13 9.10 45.56 0.41 4.54 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -31.30 338.63 -6.58 -37.88 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.52 Total: 7.00 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -0.14 Total: 13.44 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.24 Total: -47.56 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.76 Total: -32.08 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.30 -6.58 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591619057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.267 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds