Wall clock time and date at job start Tue Mar 31 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 N 1.46492 * 109.47569 * 120.00128 * 2 1 3 5 5 C 1.46764 * 124.35153 * 119.99626 * 4 2 1 6 6 C 1.54478 * 105.47430 * 162.98958 * 5 4 2 7 7 C 1.54623 * 101.76601 * 25.41595 * 6 5 4 8 8 H 1.09011 * 110.48329 * 94.01597 * 7 6 5 9 9 N 1.46501 * 110.48890 * 216.52362 * 7 6 5 10 10 C 1.36935 * 120.00057 * 57.73188 * 9 7 6 11 11 H 1.08007 * 119.99610 * 37.19459 * 10 9 7 12 12 C 1.38809 * 120.00473 * 217.20166 * 10 9 7 13 13 N 1.31624 * 119.99502 * 21.22851 * 12 10 9 14 14 Si 1.86799 * 120.00390 * 201.23208 * 12 10 9 15 15 H 1.48502 * 109.47240 * 89.99435 * 14 12 10 16 16 H 1.48496 * 109.47277 * 209.99742 * 14 12 10 17 17 H 1.48499 * 109.46759 * 329.99716 * 14 12 10 18 18 C 1.46497 * 120.00090 * 237.72960 * 9 7 6 19 19 C 1.53000 * 109.47332 * 269.99945 * 18 9 7 20 20 C 1.50699 * 109.46937 * 180.02562 * 19 18 9 21 21 O 1.20827 * 120.00623 * 359.97438 * 20 19 18 22 22 O 1.34233 * 119.99748 * 180.28056 * 20 19 18 23 23 C 1.34659 * 124.31560 * 300.13650 * 4 2 1 24 24 O 1.21281 * 125.06846 * 0.39919 * 23 4 2 25 25 H 1.09002 * 109.47515 * 299.99597 * 1 2 3 26 26 H 1.08997 * 109.47426 * 59.99959 * 1 2 3 27 27 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47191 * 240.00841 * 2 1 3 29 29 H 1.09003 * 109.47422 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47631 * 300.00319 * 3 2 1 31 31 H 1.09009 * 109.46893 * 60.00586 * 3 2 1 32 32 H 1.08998 * 110.24352 * 43.99076 * 5 4 2 33 33 H 1.09002 * 110.31967 * 282.02923 * 5 4 2 34 34 H 1.09006 * 110.96784 * 267.29788 * 6 5 4 35 35 H 1.08996 * 111.00355 * 143.55481 * 6 5 4 36 36 H 0.97004 * 119.99741 * 180.02562 * 13 12 10 37 37 H 1.09008 * 109.47254 * 149.99881 * 18 9 7 38 38 H 1.09007 * 109.47024 * 30.00592 * 18 9 7 39 39 H 1.09001 * 109.46778 * 60.00110 * 19 18 9 40 40 H 1.08994 * 109.47298 * 300.00197 * 19 18 9 41 41 H 0.96701 * 117.00095 * 179.72615 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8656 -1.8888 1.1726 6 6 3.4724 -1.9923 2.5894 7 6 2.4204 -1.2418 3.4385 8 1 1.6982 -1.9425 3.8578 9 7 3.0725 -0.4794 4.5062 10 6 4.0150 0.4643 4.1962 11 1 3.8950 1.0785 3.3159 12 6 5.1247 0.6316 5.0131 13 7 5.5031 -0.3402 5.8162 14 14 6.0811 2.2356 4.9728 15 1 5.5132 3.1758 5.9722 16 1 7.5060 1.9707 5.2962 17 1 5.9843 2.8357 3.6179 18 6 2.7161 -0.7265 5.9055 19 6 1.5592 0.1908 6.3069 20 6 1.1931 -0.0630 7.7465 21 8 1.7952 -0.8929 8.3858 22 8 0.1939 0.6284 8.3168 23 6 1.7450 -0.3085 2.4581 24 8 1.0597 0.6439 2.7648 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.6564 -1.7770 0.4308 33 1 2.2658 -2.7722 0.9536 34 1 4.4402 -1.4930 2.6367 35 1 3.5568 -3.0327 2.9032 36 1 6.2783 -0.2233 6.3873 37 1 3.5780 -0.5237 6.5413 38 1 2.4133 -1.7668 6.0250 39 1 0.6974 -0.0120 5.6711 40 1 1.8621 1.2310 6.1874 41 1 -0.0070 0.4279 9.2412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591619057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:45 Heat of formation + Delta-G solvation = -127.951347 kcal Electronic energy + Delta-G solvation = -23963.427760 eV Core-core repulsion = 20457.067590 eV Total energy + Delta-G solvation = -3506.360169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37923 -41.09644 -37.77585 -37.14678 -36.99461 -35.27299 -33.50689 -31.89061 -29.75720 -28.06771 -27.87926 -26.66230 -24.20671 -23.03571 -22.28337 -21.56562 -19.77629 -19.13898 -18.43818 -17.57192 -17.26747 -17.23242 -16.93377 -16.52169 -16.02533 -15.47360 -15.05328 -14.83470 -14.53504 -14.41655 -14.14252 -13.99872 -13.86307 -13.61890 -13.32795 -13.01627 -12.92448 -12.78487 -12.62167 -12.53517 -12.49215 -12.23488 -12.10760 -12.03799 -11.90042 -11.68268 -11.58887 -11.52132 -10.70451 -10.31758 -9.45252 -8.59571 -7.87016 -5.49238 1.26188 1.40815 1.45878 1.52071 1.82437 2.21554 2.28378 2.49447 3.20683 3.61580 3.74902 4.00881 4.13418 4.18701 4.25915 4.30304 4.34995 4.39869 4.41733 4.66483 4.73498 4.74905 4.77972 4.85454 4.88593 4.95684 4.96936 5.16611 5.26805 5.31631 5.36874 5.53639 5.60384 5.66229 5.79995 5.97184 6.38514 6.42716 7.04795 7.11386 7.52356 7.75501 8.28732 9.08890 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.006985 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.546915 B = 4007.512981 C = 5086.052731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 C -0.162 4.162 4 N -0.622 5.622 5 C 0.113 3.887 6 C -0.132 4.132 7 C 0.128 3.872 8 H 0.097 0.903 9 N -0.568 5.568 10 C -0.250 4.250 11 H 0.041 0.959 12 C -0.021 4.021 13 N -0.902 5.902 14 Si 0.944 3.056 15 H -0.289 1.289 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.164 3.836 19 C -0.121 4.121 20 C 0.491 3.509 21 O -0.548 6.548 22 O -0.514 6.514 23 C 0.507 3.493 24 O -0.565 6.565 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.253 0.747 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 -3.355 -9.346 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 C -0.220 4.220 4 N -0.357 5.357 5 C -0.009 4.009 6 C -0.172 4.172 7 C 0.018 3.982 8 H 0.115 0.885 9 N -0.287 5.287 10 C -0.380 4.380 11 H 0.058 0.942 12 C -0.220 4.220 13 N -0.545 5.545 14 Si 0.772 3.228 15 H -0.216 1.216 16 H -0.214 1.214 17 H -0.200 1.200 18 C 0.038 3.962 19 C -0.161 4.161 20 C 0.335 3.665 21 O -0.438 6.438 22 O -0.327 6.327 23 C 0.294 3.706 24 O -0.443 6.443 25 H 0.056 0.944 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -8.417 -2.984 -9.389 12.957 hybrid contribution 0.604 0.978 1.084 1.580 sum -7.813 -2.006 -8.305 11.577 Atomic orbital electron populations 1.22091 0.94607 1.02393 1.02436 1.21102 0.94611 0.92586 0.87156 1.22122 1.00654 0.96977 1.02239 1.48611 1.51679 1.29772 1.05628 1.22190 0.93916 0.87106 0.97720 1.22876 0.99204 1.01340 0.93782 1.21372 0.95114 0.92216 0.89513 0.88481 1.43621 1.42564 1.42415 1.00082 1.18741 0.98522 1.10178 1.10590 0.94172 1.25645 0.96874 0.99239 1.00257 1.70089 1.25761 1.30850 1.27767 0.85653 0.77881 0.81306 0.77935 1.21617 1.21405 1.19969 1.20638 0.95024 0.94236 0.86341 1.22036 1.02161 1.04301 0.87596 1.23762 0.75665 0.76624 0.90478 1.90676 1.52733 1.34853 1.65583 1.84560 1.50817 1.62840 1.34513 1.22033 0.78861 0.84831 0.84923 1.90538 1.41134 1.30374 1.82271 0.94448 0.89534 0.91799 0.86515 0.93565 0.89276 0.94817 0.89469 0.88690 0.91785 0.88819 0.93730 0.90760 0.94287 0.88334 0.89564 0.71580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 9.19 71.98 0.66 -3.02 16 2 C 0.15 3.66 3.48 44.99 0.16 3.82 16 3 C -0.16 -4.55 9.20 71.98 0.66 -3.88 16 4 N -0.62 -19.02 2.84 -793.71 -2.25 -21.27 16 5 C 0.11 2.80 7.30 86.83 0.63 3.43 16 6 C -0.13 -4.40 6.76 31.65 0.21 -4.19 16 7 C 0.13 5.07 3.45 44.98 0.16 5.23 16 8 H 0.10 3.51 7.86 -2.38 -0.02 3.49 16 9 N -0.57 -27.21 2.45 -678.06 -1.66 -28.87 16 10 C -0.25 -13.30 7.93 84.03 0.67 -12.64 16 11 H 0.04 2.28 7.54 -2.91 -0.02 2.26 16 12 C -0.02 -1.15 4.96 84.86 0.42 -0.73 16 13 N -0.90 -51.04 11.43 21.65 0.25 -50.80 16 14 Si 0.94 44.66 29.60 68.60 2.03 46.69 16 15 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 16 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 18 C 0.16 7.78 4.56 86.38 0.39 8.17 16 19 C -0.12 -5.01 6.14 29.85 0.18 -4.82 16 20 C 0.49 18.48 8.33 71.24 0.59 19.07 16 21 O -0.55 -23.65 16.74 21.96 0.37 -23.28 16 22 O -0.51 -14.90 13.42 -51.45 -0.69 -15.59 16 23 C 0.51 20.07 6.19 87.86 0.54 20.61 16 24 O -0.56 -26.22 15.14 -3.03 -0.05 -26.27 16 25 H 0.04 1.15 6.77 -2.39 -0.02 1.13 16 26 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.12 2.07 8.07 -2.39 -0.02 2.05 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 31 H 0.03 1.21 6.81 -2.38 -0.02 1.19 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 2.62 7.12 -2.38 -0.02 2.61 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 37 H 0.07 4.10 5.44 -2.38 -0.01 4.08 16 38 H 0.04 1.77 7.91 -2.38 -0.02 1.76 16 39 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 40 H 0.09 3.85 8.14 -2.39 -0.02 3.83 16 41 H 0.42 7.75 9.10 -74.06 -0.67 7.07 16 Total: -1.00 -70.93 338.63 3.64 -67.29 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.36 Total: 21.04 kcal Atomic # 6 Polarization: 25.77 SS G_CDS: 5.29 Total: 31.06 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -3.66 Total: -100.94 kcal Atomic # 8 Polarization: -64.77 SS G_CDS: -0.37 Total: -65.14 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -70.93 3.64 -67.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591619057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.665 kcal (2) G-P(sol) polarization free energy of solvation -70.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds