Wall clock time and date at job start Tue Mar 31 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47196 * 2 1 4 4 C 1.52998 * 109.47172 * 120.00477 * 2 1 3 5 5 H 1.09000 * 109.46919 * 184.99985 * 4 2 1 6 6 N 1.46491 * 109.47615 * 64.99581 * 4 2 1 7 7 C 1.34777 * 120.00049 * 154.99741 * 6 4 2 8 8 O 1.21276 * 120.00475 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99829 * 180.02562 * 7 6 4 10 10 N 1.46504 * 109.46991 * 180.02562 * 9 7 6 11 11 C 1.36940 * 119.99940 * 269.99873 * 10 9 7 12 12 H 1.07991 * 119.99903 * 192.63176 * 11 10 9 13 13 C 1.38814 * 119.99838 * 12.63390 * 11 10 9 14 14 N 1.31616 * 120.00043 * 25.30356 * 13 11 10 15 15 Si 1.86800 * 119.99923 * 205.30054 * 13 11 10 16 16 H 1.48500 * 109.47255 * 89.99808 * 15 13 11 17 17 H 1.48492 * 109.47266 * 210.00368 * 15 13 11 18 18 H 1.48505 * 109.46877 * 330.00277 * 15 13 11 19 19 C 1.46498 * 120.00256 * 90.00047 * 10 9 7 20 20 C 1.52995 * 117.50089 * 194.11692 * 19 10 9 21 21 C 1.53000 * 117.50154 * 125.45494 * 19 10 9 22 22 C 1.50702 * 109.47165 * 304.99325 * 4 2 1 23 23 O 1.20825 * 119.99983 * 119.99817 * 22 4 2 24 24 O 1.34224 * 120.00215 * 300.00683 * 22 4 2 25 25 H 1.08992 * 109.47796 * 59.99601 * 1 2 3 26 26 H 1.09000 * 109.47391 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46953 * 299.99398 * 1 2 3 28 28 H 1.08998 * 109.46963 * 239.99879 * 2 1 3 29 29 H 1.09000 * 109.47079 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47141 * 300.00068 * 3 2 1 31 31 H 1.09004 * 109.46678 * 60.00433 * 3 2 1 32 32 H 0.96998 * 120.00427 * 335.00270 * 6 4 2 33 33 H 1.09004 * 109.47239 * 300.00040 * 9 7 6 34 34 H 1.09000 * 109.47391 * 60.00280 * 9 7 6 35 35 H 0.97001 * 119.99857 * 175.07335 * 14 13 11 36 36 H 1.09006 * 115.54576 * 339.78616 * 19 10 9 37 37 H 1.08999 * 117.49659 * 0.02562 * 20 19 10 38 38 H 1.09007 * 117.49975 * 145.01918 * 20 19 10 39 39 H 1.09003 * 117.49796 * 214.98291 * 21 19 10 40 40 H 1.08996 * 117.49531 * 359.97438 * 21 19 10 41 41 H 0.96699 * 117.00433 * 179.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6444 1.2950 6 7 1.6524 -2.1328 1.1905 7 6 2.3686 -3.0568 1.8613 8 8 3.3337 -2.7196 2.5138 9 6 1.9702 -4.5089 1.8005 10 7 2.8991 -5.3043 2.6072 11 6 4.0282 -5.8270 2.0351 12 1 4.6039 -6.5739 2.5614 13 6 4.4327 -5.3967 0.7789 14 7 4.0839 -4.2029 0.3483 15 14 5.4721 -6.5121 -0.3005 16 1 4.5844 -7.3496 -1.1466 17 1 6.3476 -5.6848 -1.1690 18 1 6.3106 -7.3886 0.5561 19 6 2.6202 -5.5406 4.0258 20 6 3.7609 -6.0823 4.8895 21 6 2.5908 -6.9924 4.5078 22 6 1.4392 -0.0860 2.4766 23 8 0.7572 -0.7447 3.2254 24 8 1.6617 1.2116 2.7379 25 1 -0.3634 0.5138 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.8804 -2.4026 0.6689 33 1 0.9592 -4.6250 2.1910 34 1 2.0017 -4.8513 0.7661 35 1 4.4249 -3.8738 -0.4981 36 1 1.9249 -4.8417 4.4909 37 1 4.7192 -6.2625 4.4022 38 1 3.8160 -5.7402 5.9230 39 1 1.8764 -7.2485 5.2903 40 1 2.7786 -7.7717 3.7693 41 1 1.2551 1.5747 3.5366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591866250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:18 Heat of formation + Delta-G solvation = -70.718409 kcal Electronic energy + Delta-G solvation = -23975.105235 eV Core-core repulsion = 20471.226872 eV Total energy + Delta-G solvation = -3503.878363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.37049 -38.27342 -36.88920 -35.93548 -35.75961 -33.32248 -32.33589 -30.47339 -27.84505 -27.18152 -25.84221 -23.71045 -22.39798 -21.38107 -20.07011 -19.76743 -19.40912 -17.74060 -17.01303 -16.29461 -15.87731 -15.57208 -15.39616 -15.03232 -14.29201 -14.04008 -13.87956 -13.45335 -13.31190 -12.88939 -12.77035 -12.46160 -12.21243 -11.98317 -11.70528 -11.35680 -11.21715 -11.06578 -10.82365 -10.81015 -10.69210 -10.64827 -10.47959 -10.29155 -10.18219 -9.93193 -9.77327 -9.33893 -8.56962 -8.32274 -8.23177 -6.77772 -5.84487 -3.10240 2.55539 3.18005 3.37166 3.44853 3.46283 4.01466 4.36222 4.55156 4.74904 4.92728 4.97209 5.08559 5.22122 5.40913 5.46850 5.59908 5.67568 5.78451 5.86099 5.91586 5.95864 6.04200 6.09227 6.20391 6.24580 6.34269 6.47907 6.49052 6.58758 6.69479 6.74203 6.94199 7.05954 7.12824 7.27283 7.80930 8.20062 8.24404 8.56731 9.13026 9.68691 9.85476 10.24258 11.25174 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017596 B = 0.005946 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.898868 B = 4707.806664 C = 5762.698248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.155 4.155 4 C 0.169 3.831 5 H 0.120 0.880 6 N -0.728 5.728 7 C 0.538 3.462 8 O -0.521 6.521 9 C 0.169 3.831 10 N -0.537 5.537 11 C -0.250 4.250 12 H 0.081 0.919 13 C 0.001 3.999 14 N -0.895 5.895 15 Si 0.907 3.093 16 H -0.288 1.288 17 H -0.294 1.294 18 H -0.281 1.281 19 C 0.131 3.869 20 C -0.201 4.201 21 C -0.222 4.222 22 C 0.467 3.533 23 O -0.509 6.509 24 O -0.517 6.517 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.391 0.609 33 H 0.044 0.956 34 H 0.098 0.902 35 H 0.255 0.745 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 9.003 -1.125 12.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 C -0.212 4.212 4 C 0.060 3.940 5 H 0.137 0.863 6 N -0.385 5.385 7 C 0.324 3.676 8 O -0.392 6.392 9 C 0.038 3.962 10 N -0.252 5.252 11 C -0.379 4.379 12 H 0.099 0.901 13 C -0.197 4.197 14 N -0.540 5.540 15 Si 0.738 3.262 16 H -0.215 1.215 17 H -0.221 1.221 18 H -0.207 1.207 19 C 0.021 3.979 20 C -0.240 4.240 21 C -0.263 4.263 22 C 0.307 3.693 23 O -0.395 6.395 24 O -0.329 6.329 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.225 0.775 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -7.629 8.891 -0.980 11.756 hybrid contribution 0.195 -0.249 -0.248 0.402 sum -7.434 8.642 -1.228 11.465 Atomic orbital electron populations 1.21925 0.94924 1.02158 1.01862 1.21325 0.96128 0.97101 0.96944 1.21995 1.01639 0.94852 1.02714 1.20296 1.01438 0.83573 0.88677 0.86287 1.46121 1.33975 1.03664 1.54720 1.21998 0.81433 0.88112 0.76012 1.90516 1.26028 1.81013 1.41692 1.20564 0.90378 0.87077 0.98174 1.43515 1.23093 1.55818 1.02787 1.19203 1.03974 1.16382 0.98374 0.90116 1.24762 0.99730 0.95992 0.99178 1.69796 1.47833 1.14510 1.21863 0.86191 0.79312 0.80188 0.80540 1.21539 1.22057 1.20655 1.20916 0.98822 0.92915 0.85241 1.23120 0.95426 1.06190 0.99225 1.23411 1.01776 0.97548 1.03567 1.24633 0.77571 0.79213 0.87849 1.90671 1.36924 1.63078 1.48856 1.84651 1.72543 1.27734 1.47934 0.91953 0.92174 0.93029 0.88862 0.92248 0.92561 0.90422 0.77488 0.93807 0.88424 0.93494 0.89223 0.88525 0.90699 0.90694 0.89317 0.74543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.75 37.16 0.33 -1.31 16 2 C -0.10 -1.18 2.85 -90.62 -0.26 -1.44 16 3 C -0.15 -1.67 8.83 37.16 0.33 -1.34 16 4 C 0.17 2.81 2.29 -69.09 -0.16 2.65 16 5 H 0.12 2.29 7.58 -51.93 -0.39 1.90 16 6 N -0.73 -13.54 4.54 -54.94 -0.25 -13.79 16 7 C 0.54 12.63 5.62 -10.98 -0.06 12.57 16 8 O -0.52 -14.59 15.51 5.56 0.09 -14.50 16 9 C 0.17 3.90 5.48 -5.19 -0.03 3.87 16 10 N -0.54 -13.53 2.38 -167.02 -0.40 -13.92 16 11 C -0.25 -6.79 8.89 -15.06 -0.13 -6.92 16 12 H 0.08 2.19 6.28 -52.49 -0.33 1.86 16 13 C 0.00 0.04 4.83 -17.43 -0.08 -0.05 16 14 N -0.90 -24.51 8.85 55.49 0.49 -24.01 16 15 Si 0.91 21.57 29.63 -169.99 -5.04 16.54 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.13 2.94 6.60 -67.93 -0.45 2.49 16 20 C -0.20 -4.20 9.77 -26.70 -0.26 -4.46 16 21 C -0.22 -4.33 10.14 -26.69 -0.27 -4.60 16 22 C 0.47 7.70 6.13 36.01 0.22 7.92 16 23 O -0.51 -10.02 17.08 -18.75 -0.32 -10.34 16 24 O -0.52 -6.46 10.57 -39.24 -0.41 -6.87 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.65 6.77 -51.93 -0.35 0.30 16 27 H 0.05 0.58 7.07 -51.93 -0.37 0.22 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.84 5.46 -51.93 -0.28 0.56 16 32 H 0.39 6.19 7.18 -40.82 -0.29 5.89 16 33 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.10 2.34 6.62 -51.93 -0.34 2.00 16 35 H 0.25 6.86 8.32 -40.82 -0.34 6.52 16 36 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 37 H 0.10 2.20 6.44 -51.93 -0.33 1.87 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.40 3.32 9.10 45.56 0.41 3.74 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -33.75 334.08 -6.85 -40.61 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.22 Total: 11.87 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -0.83 Total: 9.39 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.16 Total: -51.73 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.65 Total: -31.71 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.04 Total: 16.54 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.75 -6.85 -40.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591866250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.113 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds