Wall clock time and date at job start Tue Mar 31 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47196 * 2 1 4 4 C 1.52998 * 109.47172 * 120.00477 * 2 1 3 5 5 H 1.09000 * 109.46919 * 184.99985 * 4 2 1 6 6 N 1.46491 * 109.47615 * 64.99581 * 4 2 1 7 7 C 1.34777 * 120.00049 * 154.99741 * 6 4 2 8 8 O 1.21276 * 120.00475 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99829 * 180.02562 * 7 6 4 10 10 N 1.46504 * 109.46991 * 180.02562 * 9 7 6 11 11 C 1.36940 * 119.99940 * 269.99873 * 10 9 7 12 12 H 1.07991 * 119.99903 * 192.63176 * 11 10 9 13 13 C 1.38814 * 119.99838 * 12.63390 * 11 10 9 14 14 N 1.31616 * 120.00043 * 25.30356 * 13 11 10 15 15 Si 1.86800 * 119.99923 * 205.30054 * 13 11 10 16 16 H 1.48500 * 109.47255 * 89.99808 * 15 13 11 17 17 H 1.48492 * 109.47266 * 210.00368 * 15 13 11 18 18 H 1.48505 * 109.46877 * 330.00277 * 15 13 11 19 19 C 1.46498 * 120.00256 * 90.00047 * 10 9 7 20 20 C 1.52995 * 117.50089 * 194.11692 * 19 10 9 21 21 C 1.53000 * 117.50154 * 125.45494 * 19 10 9 22 22 C 1.50702 * 109.47165 * 304.99325 * 4 2 1 23 23 O 1.20825 * 119.99983 * 119.99817 * 22 4 2 24 24 O 1.34224 * 120.00215 * 300.00683 * 22 4 2 25 25 H 1.08992 * 109.47796 * 59.99601 * 1 2 3 26 26 H 1.09000 * 109.47391 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46953 * 299.99398 * 1 2 3 28 28 H 1.08998 * 109.46963 * 239.99879 * 2 1 3 29 29 H 1.09000 * 109.47079 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47141 * 300.00068 * 3 2 1 31 31 H 1.09004 * 109.46678 * 60.00433 * 3 2 1 32 32 H 0.96998 * 120.00427 * 335.00270 * 6 4 2 33 33 H 1.09004 * 109.47239 * 300.00040 * 9 7 6 34 34 H 1.09000 * 109.47391 * 60.00280 * 9 7 6 35 35 H 0.97001 * 119.99857 * 175.07335 * 14 13 11 36 36 H 1.09006 * 115.54576 * 339.78616 * 19 10 9 37 37 H 1.08999 * 117.49659 * 0.02562 * 20 19 10 38 38 H 1.09007 * 117.49975 * 145.01918 * 20 19 10 39 39 H 1.09003 * 117.49796 * 214.98291 * 21 19 10 40 40 H 1.08996 * 117.49531 * 359.97438 * 21 19 10 41 41 H 0.96699 * 117.00433 * 179.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6444 1.2950 6 7 1.6524 -2.1328 1.1905 7 6 2.3686 -3.0568 1.8613 8 8 3.3337 -2.7196 2.5138 9 6 1.9702 -4.5089 1.8005 10 7 2.8991 -5.3043 2.6072 11 6 4.0282 -5.8270 2.0351 12 1 4.6039 -6.5739 2.5614 13 6 4.4327 -5.3967 0.7789 14 7 4.0839 -4.2029 0.3483 15 14 5.4721 -6.5121 -0.3005 16 1 4.5844 -7.3496 -1.1466 17 1 6.3476 -5.6848 -1.1690 18 1 6.3106 -7.3886 0.5561 19 6 2.6202 -5.5406 4.0258 20 6 3.7609 -6.0823 4.8895 21 6 2.5908 -6.9924 4.5078 22 6 1.4392 -0.0860 2.4766 23 8 0.7572 -0.7447 3.2254 24 8 1.6617 1.2116 2.7379 25 1 -0.3634 0.5138 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.8804 -2.4026 0.6689 33 1 0.9592 -4.6250 2.1910 34 1 2.0017 -4.8513 0.7661 35 1 4.4249 -3.8738 -0.4981 36 1 1.9249 -4.8417 4.4909 37 1 4.7192 -6.2625 4.4022 38 1 3.8160 -5.7402 5.9230 39 1 1.8764 -7.2485 5.2903 40 1 2.7786 -7.7717 3.7693 41 1 1.2551 1.5747 3.5366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591866250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:18 Heat of formation + Delta-G solvation = -94.043771 kcal Electronic energy + Delta-G solvation = -23976.116699 eV Core-core repulsion = 20471.226872 eV Total energy + Delta-G solvation = -3504.889827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.70485 -39.97329 -38.52721 -37.25643 -37.07535 -35.19689 -33.84931 -32.40342 -29.37621 -28.15823 -27.46249 -25.55090 -23.62004 -23.00674 -21.75655 -21.18126 -20.99940 -19.00461 -18.62924 -17.98100 -17.57559 -17.17422 -16.78446 -16.53894 -16.04398 -15.75475 -15.12916 -14.90961 -14.70802 -14.44199 -14.20475 -13.91096 -13.62945 -13.42500 -13.11185 -12.87386 -12.70944 -12.52584 -12.36669 -12.25599 -12.14819 -12.05626 -11.87920 -11.84953 -11.78761 -11.68799 -11.47331 -11.02732 -10.44857 -10.29275 -9.86784 -8.67783 -7.86582 -5.13877 1.23229 1.47556 1.49530 1.57288 1.92294 2.41432 2.49542 2.85438 3.13109 3.44289 3.48483 3.63627 3.93656 4.13730 4.23454 4.34223 4.40849 4.44746 4.50335 4.61183 4.64783 4.85333 4.89578 4.92546 4.96248 5.02322 5.04117 5.17043 5.17321 5.29449 5.37311 5.48920 5.56080 5.60274 5.71613 5.78569 6.28300 6.92733 7.02590 7.14958 7.80223 8.02377 8.27113 9.20383 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017596 B = 0.005946 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.898868 B = 4707.806664 C = 5762.698248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.151 4.151 4 C 0.164 3.836 5 H 0.089 0.911 6 N -0.717 5.717 7 C 0.540 3.460 8 O -0.574 6.574 9 C 0.166 3.834 10 N -0.555 5.555 11 C -0.260 4.260 12 H 0.073 0.927 13 C -0.045 4.045 14 N -0.910 5.910 15 Si 0.967 3.033 16 H -0.281 1.281 17 H -0.300 1.300 18 H -0.281 1.281 19 C 0.100 3.900 20 C -0.203 4.203 21 C -0.188 4.188 22 C 0.475 3.525 23 O -0.545 6.545 24 O -0.501 6.501 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.406 0.594 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.249 0.751 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.680 9.456 -1.425 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.208 4.208 4 C 0.056 3.944 5 H 0.107 0.893 6 N -0.373 5.373 7 C 0.327 3.673 8 O -0.451 6.451 9 C 0.036 3.964 10 N -0.270 5.270 11 C -0.390 4.390 12 H 0.090 0.910 13 C -0.241 4.241 14 N -0.555 5.555 15 Si 0.797 3.203 16 H -0.208 1.208 17 H -0.228 1.228 18 H -0.207 1.207 19 C -0.009 4.009 20 C -0.242 4.242 21 C -0.228 4.228 22 C 0.317 3.683 23 O -0.434 6.434 24 O -0.314 6.314 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.242 0.758 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -8.974 9.374 -1.283 13.041 hybrid contribution 0.578 -0.295 -0.092 0.656 sum -8.396 9.079 -1.375 12.442 Atomic orbital electron populations 1.21912 0.93277 1.02375 1.02926 1.21335 0.97376 0.97535 0.94425 1.21979 1.01129 0.93715 1.03964 1.20436 0.99917 0.82824 0.91253 0.89341 1.45797 1.33618 1.04345 1.53517 1.21963 0.80861 0.88906 0.75527 1.90479 1.28457 1.81946 1.44192 1.20601 0.91338 0.86871 0.97555 1.43656 1.22821 1.56534 1.04033 1.19327 1.04603 1.16260 0.98791 0.90964 1.25412 1.01484 0.97050 1.00127 1.69945 1.48713 1.15293 1.21583 0.85273 0.77893 0.78417 0.78760 1.20757 1.22771 1.20669 1.21180 1.00120 0.95092 0.84497 1.23114 0.94398 1.06816 0.99887 1.23362 1.00953 0.95195 1.03324 1.24392 0.76733 0.80056 0.87115 1.90661 1.38759 1.64178 1.49830 1.84583 1.72103 1.25570 1.49173 0.89343 0.92442 0.93435 0.88851 0.93116 0.90064 0.90339 0.75816 0.91220 0.89640 0.94171 0.88851 0.91003 0.88419 0.87131 0.90257 0.71983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.75 71.98 0.63 -2.22 16 2 C -0.09 -2.04 2.85 -10.79 -0.03 -2.08 16 3 C -0.15 -2.94 8.83 71.98 0.64 -2.31 16 4 C 0.16 5.46 2.29 44.25 0.10 5.56 16 5 H 0.09 3.54 7.58 -2.39 -0.02 3.52 16 6 N -0.72 -26.87 4.54 -446.11 -2.03 -28.90 16 7 C 0.54 25.90 5.62 87.66 0.49 26.39 16 8 O -0.57 -33.24 15.51 -3.02 -0.05 -33.28 16 9 C 0.17 7.79 5.48 85.63 0.47 8.26 16 10 N -0.55 -28.26 2.38 -682.33 -1.62 -29.88 16 11 C -0.26 -14.36 8.89 84.03 0.75 -13.61 16 12 H 0.07 4.01 6.28 -2.92 -0.02 3.99 16 13 C -0.04 -2.46 4.83 84.86 0.41 -2.05 16 14 N -0.91 -50.86 8.85 21.65 0.19 -50.67 16 15 Si 0.97 45.04 29.63 68.60 2.03 47.07 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 C 0.10 4.45 6.60 44.99 0.30 4.75 16 20 C -0.20 -8.39 9.77 30.62 0.30 -8.09 16 21 C -0.19 -6.98 10.14 30.62 0.31 -6.67 16 22 C 0.48 15.42 6.13 71.24 0.44 15.86 16 23 O -0.54 -21.29 17.08 21.97 0.38 -20.92 16 24 O -0.50 -11.74 10.57 -51.36 -0.54 -12.28 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.13 6.77 -2.39 -0.02 1.12 16 27 H 0.05 0.96 7.07 -2.38 -0.02 0.95 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.52 5.46 -2.38 -0.01 1.51 16 32 H 0.41 12.70 7.18 -92.71 -0.67 12.04 16 33 H 0.07 2.82 8.07 -2.38 -0.02 2.80 16 34 H 0.09 4.17 6.62 -2.39 -0.02 4.15 16 35 H 0.25 13.67 8.32 -92.71 -0.77 12.90 16 36 H 0.09 4.03 8.14 -2.38 -0.02 4.01 16 37 H 0.07 3.32 6.44 -2.39 -0.02 3.31 16 38 H 0.10 3.52 8.14 -2.38 -0.02 3.50 16 39 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.42 6.12 9.10 -74.06 -0.67 5.45 16 Total: -1.00 -74.31 334.08 2.88 -71.43 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.28 Total: 33.62 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: 4.80 Total: 23.80 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -3.46 Total: -109.45 kcal Atomic # 8 Polarization: -66.27 SS G_CDS: -0.21 Total: -66.49 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -74.31 2.88 -71.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591866250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.612 kcal (2) G-P(sol) polarization free energy of solvation -74.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds