Wall clock time and date at job start Tue Mar 31 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47655 * 2 1 4 4 C 1.50699 * 109.47264 * 239.99756 * 2 1 3 5 5 H 1.07997 * 120.00501 * 240.00185 * 4 2 1 6 6 C 1.37881 * 119.99975 * 60.00209 * 4 2 1 7 7 N 1.31515 * 119.99927 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47005 * 89.99898 * 8 6 4 10 10 H 1.48498 * 109.47009 * 209.99594 * 8 6 4 11 11 H 1.48493 * 109.47136 * 329.99934 * 8 6 4 12 12 N 1.46902 * 109.46960 * 119.99955 * 2 1 3 13 13 C 1.46903 * 110.99920 * 205.55833 * 12 2 1 14 14 H 1.08997 * 109.39929 * 328.85632 * 13 12 2 15 15 C 1.53070 * 109.40260 * 209.02644 * 13 12 2 16 16 C 1.53344 * 108.42542 * 190.97149 * 15 13 12 17 17 C 1.52925 * 108.67150 * 67.53403 * 16 15 13 18 18 N 1.45752 * 110.48760 * 309.24307 * 17 16 15 19 19 C 1.46498 * 117.94657 * 199.07824 * 18 17 16 20 20 C 1.53001 * 109.47041 * 90.00225 * 19 18 17 21 21 C 1.50706 * 109.47084 * 179.97438 * 20 19 18 22 22 O 1.20820 * 119.99672 * 0.02562 * 21 20 19 23 23 O 1.34225 * 120.00054 * 179.97438 * 21 20 19 24 24 C 1.33357 * 124.10570 * 19.35605 * 18 17 16 25 25 O 1.21277 * 118.24350 * 177.49693 * 24 18 17 26 26 H 1.09000 * 109.47462 * 302.90482 * 1 2 3 27 27 H 1.09001 * 109.47128 * 62.90519 * 1 2 3 28 28 H 1.09001 * 109.47480 * 182.90804 * 1 2 3 29 29 H 0.96999 * 120.00276 * 179.97438 * 7 6 4 30 30 H 1.00895 * 111.00175 * 81.60767 * 12 2 1 31 31 H 1.09003 * 109.67146 * 71.23921 * 15 13 12 32 32 H 1.09001 * 109.70277 * 310.72425 * 15 13 12 33 33 H 1.08998 * 109.60287 * 307.77581 * 16 15 13 34 34 H 1.09001 * 109.59998 * 187.28747 * 16 15 13 35 35 H 1.09003 * 109.29691 * 188.93643 * 17 16 15 36 36 H 1.08993 * 109.13753 * 69.45386 * 17 16 15 37 37 H 1.09000 * 109.47250 * 330.00147 * 19 18 17 38 38 H 1.09003 * 109.47139 * 209.99638 * 19 18 17 39 39 H 1.09006 * 109.47168 * 299.99696 * 20 19 18 40 40 H 1.09000 * 109.47162 * 59.99868 * 20 19 18 41 41 H 0.96695 * 117.00470 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3448 -2.1617 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7566 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 3.3616 -0.2220 1.5680 14 1 3.9030 0.0692 0.6679 15 6 4.1191 -1.3488 2.2749 16 6 5.3957 -0.7629 2.8902 17 6 5.0022 0.1864 4.0227 18 7 3.9991 1.1393 3.5643 19 6 3.8120 2.3666 4.3421 20 6 4.7439 3.4561 3.8076 21 6 4.5509 4.7188 4.6073 22 8 3.7506 4.7445 5.5121 23 8 5.2689 5.8146 4.3151 24 6 3.2373 0.9615 2.4843 25 8 2.4030 1.8029 2.2257 26 1 -0.3634 0.5583 0.8628 27 1 -0.3633 0.4681 -0.9149 28 1 -0.3634 -1.0263 0.0521 29 1 0.7088 1.1612 -3.4844 30 1 2.0105 -1.6929 1.0685 31 1 4.3812 -2.1233 1.5541 32 1 3.4950 -1.7747 3.0605 33 1 5.9500 -0.2142 2.1289 34 1 6.0136 -1.5687 3.2865 35 1 5.8852 0.7280 4.3619 36 1 4.5957 -0.3943 4.8507 37 1 4.0435 2.1720 5.3893 38 1 2.7774 2.6983 4.2542 39 1 5.7785 3.1245 3.8955 40 1 4.5123 3.6507 2.7604 41 1 5.1100 6.6006 4.8554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:15 Heat of formation + Delta-G solvation = -128.312891 kcal Electronic energy + Delta-G solvation = -23277.112017 eV Core-core repulsion = 19770.736170 eV Total energy + Delta-G solvation = -3506.375847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61183 -39.99039 -36.47582 -36.14041 -36.02276 -33.93832 -32.12056 -30.62808 -29.32802 -26.64866 -25.42346 -24.99547 -22.95243 -22.25970 -20.93602 -19.93956 -18.58311 -18.09195 -16.92138 -16.73330 -16.34840 -15.84656 -15.69635 -15.39025 -14.79108 -14.22915 -13.99951 -13.64729 -13.57608 -13.17023 -13.12238 -12.99129 -12.28458 -12.24737 -11.84402 -11.70078 -11.48443 -11.25871 -11.20855 -11.07415 -10.92331 -10.87656 -10.76086 -10.65146 -10.23386 -10.02695 -9.71709 -9.12125 -9.01587 -8.56222 -8.32709 -7.31774 -5.95007 -4.08717 2.05932 2.70236 3.15772 3.28044 3.35305 3.36323 3.41155 4.41270 4.66148 4.71359 4.77420 4.82073 4.98258 5.12063 5.15881 5.29627 5.33357 5.42477 5.45701 5.62388 5.73999 5.78306 5.89775 5.96742 6.03753 6.19848 6.32790 6.42394 6.60903 7.04616 7.31846 7.38115 7.58752 7.71901 7.72634 7.80276 8.10783 8.22649 8.35383 8.68047 8.70828 9.04652 9.58648 11.05922 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.004361 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.718006 B = 6418.893225 C = 7009.066964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.211 3.789 3 H 0.046 0.954 4 C -0.549 4.549 5 H 0.052 0.948 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.673 5.673 13 C 0.084 3.916 14 H 0.083 0.917 15 C -0.127 4.127 16 C -0.133 4.133 17 C 0.117 3.883 18 N -0.614 5.614 19 C 0.122 3.878 20 C -0.131 4.131 21 C 0.486 3.514 22 O -0.516 6.516 23 O -0.518 6.518 24 C 0.525 3.475 25 O -0.521 6.521 26 H 0.014 0.986 27 H 0.081 0.919 28 H 0.020 0.980 29 H 0.261 0.739 30 H 0.334 0.666 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.509 1.386 14.222 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.103 3.897 3 H 0.064 0.936 4 C -0.588 4.588 5 H 0.071 0.929 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.305 5.305 13 C -0.030 4.030 14 H 0.101 0.899 15 C -0.165 4.165 16 C -0.171 4.171 17 C -0.006 4.006 18 N -0.350 5.350 19 C -0.002 4.002 20 C -0.169 4.169 21 C 0.329 3.671 22 O -0.405 6.405 23 O -0.330 6.330 24 C 0.312 3.688 25 O -0.394 6.394 26 H 0.033 0.967 27 H 0.099 0.901 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.153 0.847 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 11.462 2.010 14.336 18.465 hybrid contribution 0.870 -0.354 -1.281 1.589 sum 12.332 1.657 13.055 18.035 Atomic orbital electron populations 1.21630 0.97818 0.98190 1.00398 1.19248 0.92531 0.94640 0.83256 0.93642 1.21879 1.32117 1.12749 0.92102 0.92946 1.24936 0.94896 0.94822 0.98871 1.69910 1.36133 1.22572 1.23368 0.86665 0.79132 0.79486 0.83067 1.20666 1.21229 1.20115 1.60674 1.19056 1.09482 1.41277 1.21203 0.93212 0.92203 0.96344 0.89928 1.21905 0.95861 0.98089 1.00631 1.21856 0.98281 0.98959 0.98023 1.21346 0.91020 0.91059 0.97154 1.47460 1.39265 1.20237 1.28047 1.21120 1.01074 0.83457 0.94555 1.21767 1.03483 0.89929 1.01769 1.23385 0.76839 0.84931 0.81993 1.90731 1.34507 1.84460 1.30753 1.84550 1.63326 1.23324 1.61816 1.20626 0.79554 0.88358 0.80245 1.90697 1.33773 1.43889 1.71054 0.96669 0.90053 0.96128 0.92899 0.84745 0.90737 0.90738 0.90920 0.89981 0.91238 0.91954 0.90060 0.88422 0.87725 0.86940 0.73240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.21 9.33 37.16 0.35 -2.87 16 2 C 0.21 5.50 2.09 -68.87 -0.14 5.35 16 3 H 0.05 1.36 6.86 -51.93 -0.36 1.00 16 4 C -0.55 -14.89 8.31 -34.44 -0.29 -15.18 16 5 H 0.05 1.37 7.73 -52.49 -0.41 0.97 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 7 N -0.88 -25.70 11.30 55.43 0.63 -25.08 16 8 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.67 -14.51 5.92 -102.39 -0.61 -15.12 16 13 C 0.08 1.54 2.57 -69.07 -0.18 1.36 16 14 H 0.08 1.69 7.62 -51.93 -0.40 1.29 16 15 C -0.13 -1.65 5.25 -26.52 -0.14 -1.79 16 16 C -0.13 -1.28 6.02 -26.59 -0.16 -1.44 16 17 C 0.12 1.12 6.32 -4.48 -0.03 1.09 16 18 N -0.61 -8.40 2.81 -174.95 -0.49 -8.89 16 19 C 0.12 1.56 4.51 -4.04 -0.02 1.55 16 20 C -0.13 -1.44 6.13 -27.88 -0.17 -1.61 16 21 C 0.49 5.58 8.33 36.01 0.30 5.88 16 22 O -0.52 -7.39 16.74 -18.75 -0.31 -7.71 16 23 O -0.52 -4.68 13.42 -39.24 -0.53 -5.21 16 24 C 0.52 9.70 7.19 -11.86 -0.09 9.62 16 25 O -0.52 -12.03 14.59 5.56 0.08 -11.95 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 2.31 6.00 -51.93 -0.31 2.00 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.33 6.76 7.98 -39.29 -0.31 6.45 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.88 7.97 -51.93 -0.41 0.46 16 38 H 0.10 1.58 7.08 -51.93 -0.37 1.21 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.41 1.92 9.10 45.56 0.41 2.34 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -34.55 336.98 -7.34 -41.89 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.51 Total: 7.15 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.66 Total: 3.74 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.47 Total: -49.09 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.76 Total: -24.87 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.55 -7.34 -41.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.421 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds