Wall clock time and date at job start Tue Mar 31 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47655 * 2 1 4 4 C 1.50699 * 109.47264 * 239.99756 * 2 1 3 5 5 H 1.07997 * 120.00501 * 240.00185 * 4 2 1 6 6 C 1.37881 * 119.99975 * 60.00209 * 4 2 1 7 7 N 1.31515 * 119.99927 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47005 * 89.99898 * 8 6 4 10 10 H 1.48498 * 109.47009 * 209.99594 * 8 6 4 11 11 H 1.48493 * 109.47136 * 329.99934 * 8 6 4 12 12 N 1.46902 * 109.46960 * 119.99955 * 2 1 3 13 13 C 1.46903 * 110.99920 * 205.55833 * 12 2 1 14 14 H 1.08997 * 109.39929 * 328.85632 * 13 12 2 15 15 C 1.53070 * 109.40260 * 209.02644 * 13 12 2 16 16 C 1.53344 * 108.42542 * 190.97149 * 15 13 12 17 17 C 1.52925 * 108.67150 * 67.53403 * 16 15 13 18 18 N 1.45752 * 110.48760 * 309.24307 * 17 16 15 19 19 C 1.46498 * 117.94657 * 199.07824 * 18 17 16 20 20 C 1.53001 * 109.47041 * 90.00225 * 19 18 17 21 21 C 1.50706 * 109.47084 * 179.97438 * 20 19 18 22 22 O 1.20820 * 119.99672 * 0.02562 * 21 20 19 23 23 O 1.34225 * 120.00054 * 179.97438 * 21 20 19 24 24 C 1.33357 * 124.10570 * 19.35605 * 18 17 16 25 25 O 1.21277 * 118.24350 * 177.49693 * 24 18 17 26 26 H 1.09000 * 109.47462 * 302.90482 * 1 2 3 27 27 H 1.09001 * 109.47128 * 62.90519 * 1 2 3 28 28 H 1.09001 * 109.47480 * 182.90804 * 1 2 3 29 29 H 0.96999 * 120.00276 * 179.97438 * 7 6 4 30 30 H 1.00895 * 111.00175 * 81.60767 * 12 2 1 31 31 H 1.09003 * 109.67146 * 71.23921 * 15 13 12 32 32 H 1.09001 * 109.70277 * 310.72425 * 15 13 12 33 33 H 1.08998 * 109.60287 * 307.77581 * 16 15 13 34 34 H 1.09001 * 109.59998 * 187.28747 * 16 15 13 35 35 H 1.09003 * 109.29691 * 188.93643 * 17 16 15 36 36 H 1.08993 * 109.13753 * 69.45386 * 17 16 15 37 37 H 1.09000 * 109.47250 * 330.00147 * 19 18 17 38 38 H 1.09003 * 109.47139 * 209.99638 * 19 18 17 39 39 H 1.09006 * 109.47168 * 299.99696 * 20 19 18 40 40 H 1.09000 * 109.47162 * 59.99868 * 20 19 18 41 41 H 0.96695 * 117.00470 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3448 -2.1617 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6308 -1.7566 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 3.3616 -0.2220 1.5680 14 1 3.9030 0.0692 0.6679 15 6 4.1191 -1.3488 2.2749 16 6 5.3957 -0.7629 2.8902 17 6 5.0022 0.1864 4.0227 18 7 3.9991 1.1393 3.5643 19 6 3.8120 2.3666 4.3421 20 6 4.7439 3.4561 3.8076 21 6 4.5509 4.7188 4.6073 22 8 3.7506 4.7445 5.5121 23 8 5.2689 5.8146 4.3151 24 6 3.2373 0.9615 2.4843 25 8 2.4030 1.8029 2.2257 26 1 -0.3634 0.5583 0.8628 27 1 -0.3633 0.4681 -0.9149 28 1 -0.3634 -1.0263 0.0521 29 1 0.7088 1.1612 -3.4844 30 1 2.0105 -1.6929 1.0685 31 1 4.3812 -2.1233 1.5541 32 1 3.4950 -1.7747 3.0605 33 1 5.9500 -0.2142 2.1289 34 1 6.0136 -1.5687 3.2865 35 1 5.8852 0.7280 4.3619 36 1 4.5957 -0.3943 4.8507 37 1 4.0435 2.1720 5.3893 38 1 2.7774 2.6983 4.2542 39 1 5.7785 3.1245 3.8955 40 1 4.5123 3.6507 2.7604 41 1 5.1100 6.6006 4.8554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:14 Heat of formation + Delta-G solvation = -155.069305 kcal Electronic energy + Delta-G solvation = -23278.272262 eV Core-core repulsion = 19770.736170 eV Total energy + Delta-G solvation = -3507.536092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.73080 -41.07753 -37.85158 -37.44640 -37.14236 -35.45845 -33.80635 -31.86275 -30.83436 -28.16655 -27.17074 -26.47371 -24.18545 -23.35157 -22.01508 -21.80031 -19.64412 -19.06339 -18.63923 -17.92051 -17.55759 -16.99032 -16.93471 -16.84754 -16.55631 -15.48789 -15.38262 -14.93436 -14.73844 -14.54323 -14.22793 -14.16159 -13.96603 -13.41235 -13.31348 -13.21663 -12.85649 -12.70401 -12.66917 -12.58829 -12.24859 -12.20889 -12.13859 -12.02015 -11.85347 -11.71894 -11.36596 -11.12681 -10.66435 -10.42771 -9.69502 -9.12851 -8.05345 -6.29196 1.14998 1.40733 1.41508 1.51410 1.70444 1.80031 2.40790 2.41619 3.15919 3.56515 3.73952 3.74432 3.92225 3.95752 4.02982 4.25633 4.32119 4.46917 4.50471 4.66371 4.74397 4.79563 4.87796 4.89824 4.97880 5.10052 5.13126 5.16074 5.27176 5.38972 5.48973 5.54414 5.58725 5.67453 6.04843 6.12664 6.29820 6.50233 6.81814 6.95204 7.01308 7.34438 7.43310 8.93917 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.004361 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.718006 B = 6418.893225 C = 7009.066964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.221 3.779 3 H -0.002 1.002 4 C -0.557 4.557 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.675 5.675 13 C 0.081 3.919 14 H 0.054 0.946 15 C -0.118 4.118 16 C -0.126 4.126 17 C 0.106 3.894 18 N -0.601 5.601 19 C 0.122 3.878 20 C -0.124 4.124 21 C 0.494 3.506 22 O -0.550 6.550 23 O -0.512 6.512 24 C 0.518 3.482 25 O -0.583 6.583 26 H 0.009 0.991 27 H 0.056 0.944 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.342 0.658 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.055 0.945 39 H 0.143 0.857 40 H 0.090 0.910 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.535 -0.399 15.425 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.112 3.888 3 H 0.016 0.984 4 C -0.596 4.596 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.187 1.187 12 N -0.307 5.307 13 C -0.033 4.033 14 H 0.072 0.928 15 C -0.156 4.156 16 C -0.164 4.164 17 C -0.015 4.015 18 N -0.334 5.334 19 C -0.001 4.001 20 C -0.163 4.163 21 C 0.337 3.663 22 O -0.441 6.441 23 O -0.326 6.326 24 C 0.307 3.693 25 O -0.462 6.462 26 H 0.028 0.972 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.161 0.839 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.161 0.839 40 H 0.109 0.891 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 14.557 0.211 15.592 21.332 hybrid contribution -0.030 0.274 -1.570 1.594 sum 14.528 0.484 14.022 20.197 Atomic orbital electron populations 1.21491 0.98433 0.98321 0.98810 1.18887 0.92076 0.92634 0.85154 0.98372 1.22157 1.31999 1.12897 0.92581 0.91979 1.25829 0.95037 0.95500 1.02288 1.70077 1.37425 1.24198 1.24047 0.85522 0.79026 0.78168 0.78686 1.20001 1.21310 1.18721 1.60469 1.21749 1.09594 1.38875 1.21280 0.91625 0.94360 0.96010 0.92814 1.21887 0.96984 0.96145 1.00606 1.21893 0.96649 0.99988 0.97832 1.21808 0.91247 0.90881 0.97555 1.47452 1.38702 1.21135 1.26153 1.21134 0.99363 0.83694 0.95941 1.21668 1.04998 0.89524 1.00082 1.23347 0.76210 0.85472 0.81239 1.90727 1.35900 1.85068 1.32365 1.84501 1.62432 1.23635 1.62032 1.20694 0.79587 0.87656 0.81409 1.90674 1.36788 1.45751 1.72970 0.97222 0.92503 0.95003 0.92964 0.83877 0.90021 0.90013 0.91255 0.85923 0.87317 0.89951 0.87121 0.92664 0.83917 0.89144 0.70933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.17 9.33 71.98 0.67 -5.50 16 2 C 0.22 12.08 2.09 44.17 0.09 12.17 16 3 H 0.00 -0.11 6.86 -2.39 -0.02 -0.13 16 4 C -0.56 -30.77 8.31 25.60 0.21 -30.56 16 5 H 0.06 3.23 7.73 -2.91 -0.02 3.21 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -55.39 11.30 21.45 0.24 -55.15 16 8 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 12 N -0.68 -29.88 5.92 -477.85 -2.83 -32.71 16 13 C 0.08 3.00 2.57 44.03 0.11 3.11 16 14 H 0.05 2.30 7.62 -2.39 -0.02 2.28 16 15 C -0.12 -2.80 5.25 30.73 0.16 -2.64 16 16 C -0.13 -1.91 6.02 30.68 0.18 -1.72 16 17 C 0.11 1.57 6.32 86.50 0.55 2.12 16 18 N -0.60 -15.67 2.81 -826.61 -2.32 -18.00 16 19 C 0.12 3.06 4.51 86.38 0.39 3.45 16 20 C -0.12 -2.60 6.13 29.85 0.18 -2.42 16 21 C 0.49 10.85 8.33 71.24 0.59 11.44 16 22 O -0.55 -15.56 16.74 21.98 0.37 -15.19 16 23 O -0.51 -8.39 13.42 -51.36 -0.69 -9.08 16 24 C 0.52 19.72 7.19 87.72 0.63 20.35 16 25 O -0.58 -28.89 14.59 -3.02 -0.04 -28.94 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 3.39 6.00 -2.39 -0.01 3.38 16 28 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 30 H 0.34 13.85 7.98 -89.70 -0.72 13.14 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 33 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 34 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 0.89 8.10 -2.39 -0.02 0.87 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.11 2.12 7.97 -2.39 -0.02 2.10 16 38 H 0.05 1.88 7.08 -2.39 -0.02 1.87 16 39 H 0.14 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.43 3.27 9.10 -74.06 -0.67 2.60 16 Total: -1.00 -80.93 336.98 0.64 -80.29 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.34 Total: 22.24 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 4.23 Total: 10.97 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -4.91 Total: -105.86 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -0.37 Total: -53.21 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -80.93 0.64 -80.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.777 kcal (2) G-P(sol) polarization free energy of solvation -80.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds