Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46763 * 2 1 4 4 C 1.50703 * 109.46723 * 119.99785 * 2 1 3 5 5 H 1.07994 * 119.99936 * 120.00255 * 4 2 1 6 6 C 1.37878 * 119.99597 * 299.99656 * 4 2 1 7 7 N 1.31506 * 120.00525 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99641 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47191 * 59.99827 * 8 6 4 10 10 H 1.48498 * 109.47299 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47240 * 300.00368 * 8 6 4 12 12 N 1.46897 * 109.46918 * 239.99772 * 2 1 3 13 13 C 1.46897 * 111.00219 * 86.44507 * 12 2 1 14 14 H 1.08994 * 109.32950 * 324.46271 * 13 12 2 15 15 C 1.53073 * 109.40151 * 84.24542 * 13 12 2 16 16 C 1.53343 * 108.42770 * 169.02875 * 15 13 12 17 17 C 1.52929 * 108.66513 * 292.45593 * 16 15 13 18 18 N 1.45762 * 110.47747 * 50.77916 * 17 16 15 19 19 C 1.46504 * 117.94587 * 160.91731 * 18 17 16 20 20 C 1.53008 * 109.46540 * 269.97686 * 19 18 17 21 21 C 1.50698 * 109.46577 * 179.97438 * 20 19 18 22 22 O 1.20824 * 120.00534 * 0.02562 * 21 20 19 23 23 O 1.34234 * 119.99993 * 179.97438 * 21 20 19 24 24 C 1.33350 * 124.10773 * 340.88749 * 18 17 16 25 25 O 1.21282 * 118.24735 * 182.22302 * 24 18 17 26 26 H 1.08997 * 109.46779 * 65.67489 * 1 2 3 27 27 H 1.08999 * 109.47053 * 185.67689 * 1 2 3 28 28 H 1.08996 * 109.46986 * 305.67668 * 1 2 3 29 29 H 0.97005 * 120.00527 * 179.97438 * 7 6 4 30 30 H 1.00903 * 111.00283 * 322.48648 * 12 2 1 31 31 H 1.09005 * 109.67392 * 288.76486 * 15 13 12 32 32 H 1.09000 * 109.67398 * 49.29364 * 15 13 12 33 33 H 1.09009 * 109.60173 * 52.22392 * 16 15 13 34 34 H 1.08997 * 109.60386 * 172.71025 * 16 15 13 35 35 H 1.09001 * 109.31552 * 290.46462 * 17 16 15 36 36 H 1.08989 * 109.30030 * 171.07950 * 17 16 15 37 37 H 1.09002 * 109.47227 * 29.97456 * 19 18 17 38 38 H 1.08994 * 109.47318 * 149.98033 * 19 18 17 39 39 H 1.08995 * 109.47068 * 300.00217 * 20 19 18 40 40 H 1.09001 * 109.46673 * 60.00223 * 20 19 18 41 41 H 0.96692 * 117.00343 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3223 -1.1193 4.0080 9 1 3.8073 -1.1189 4.0079 10 1 1.8267 -0.4196 5.2205 11 1 1.8278 -2.5195 4.0083 12 7 2.0197 -0.6925 -1.1994 13 6 2.1150 0.2304 -2.3382 14 1 1.2979 0.9501 -2.2887 15 6 3.4517 0.9740 -2.2796 16 6 3.6516 1.7171 -3.6060 17 6 3.8492 0.6871 -4.7190 18 7 2.7898 -0.3133 -4.6821 19 6 2.5582 -1.1129 -5.8876 20 6 1.5323 -0.4082 -6.7776 21 6 1.2945 -1.2303 -8.0180 22 8 1.8846 -2.2731 -8.1740 23 8 0.4264 -0.8047 -8.9491 24 6 2.0185 -0.5467 -3.6196 25 8 1.1946 -1.4338 -3.6922 26 1 -0.3633 0.4233 -0.9364 27 1 -0.3633 -1.0226 0.1017 28 1 -0.3633 0.5993 0.8348 29 1 0.7081 1.1611 3.4843 30 1 1.4357 -1.4843 -1.4235 31 1 3.4381 1.6889 -1.4569 32 1 4.2624 0.2604 -2.1329 33 1 2.7722 2.3242 -3.8212 34 1 4.5322 2.3558 -3.5383 35 1 4.8134 0.1957 -4.5884 36 1 3.8338 1.1926 -5.6845 37 1 3.4948 -1.2273 -6.4333 38 1 2.1800 -2.0953 -5.6050 39 1 0.5957 -0.2937 -6.2320 40 1 1.9105 0.5743 -7.0602 41 1 0.3069 -1.3661 -9.7272 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = -129.490588 kcal Electronic energy + Delta-G solvation = -23003.446852 eV Core-core repulsion = 19497.019937 eV Total energy + Delta-G solvation = -3506.426916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80897 -40.19541 -36.63319 -36.37807 -36.18541 -33.99079 -32.20368 -30.71935 -29.30024 -26.81004 -25.54117 -25.09519 -23.09638 -22.30106 -21.11249 -19.93524 -18.73984 -18.24861 -17.12843 -17.03551 -16.40193 -15.96477 -15.69010 -15.43461 -14.72582 -14.42433 -14.10666 -13.79680 -13.70796 -13.42007 -13.16193 -12.65368 -12.50541 -12.43117 -12.05882 -11.82982 -11.61429 -11.37486 -11.20070 -11.03675 -10.95024 -10.89882 -10.86037 -10.67098 -10.46545 -10.07349 -9.95878 -9.34497 -8.96658 -8.80160 -8.34763 -7.32634 -5.97373 -3.99707 1.92328 2.53257 2.80439 3.21815 3.36671 3.40131 3.44199 4.44840 4.51214 4.58468 4.72638 4.80591 4.88561 5.01224 5.10117 5.19160 5.33287 5.34834 5.43716 5.51305 5.68958 5.75520 5.82164 5.93783 5.96609 6.19823 6.27975 6.43431 6.59148 6.72160 6.88929 7.10576 7.32770 7.47164 7.58999 7.75537 7.89148 8.25580 8.29913 8.52082 8.59974 9.06905 9.65196 11.10268 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.003497 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.044810 B = 8004.192099 C = 8320.530788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.213 3.787 3 H 0.035 0.965 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.669 5.669 13 C 0.078 3.922 14 H 0.068 0.932 15 C -0.111 4.111 16 C -0.136 4.136 17 C 0.115 3.885 18 N -0.605 5.605 19 C 0.119 3.881 20 C -0.130 4.130 21 C 0.486 3.514 22 O -0.515 6.515 23 O -0.518 6.518 24 C 0.523 3.477 25 O -0.546 6.546 26 H 0.004 0.996 27 H 0.032 0.968 28 H 0.086 0.914 29 H 0.260 0.740 30 H 0.341 0.659 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 3.445 -20.232 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.106 3.894 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.303 5.303 13 C -0.035 4.035 14 H 0.086 0.914 15 C -0.149 4.149 16 C -0.175 4.175 17 C -0.008 4.008 18 N -0.339 5.339 19 C -0.004 4.004 20 C -0.169 4.169 21 C 0.328 3.672 22 O -0.403 6.403 23 O -0.330 6.330 24 C 0.312 3.688 25 O -0.423 6.423 26 H 0.023 0.977 27 H 0.051 0.949 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.161 0.839 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.147 3.127 -19.599 20.275 hybrid contribution -0.805 -0.544 0.066 0.973 sum 3.342 2.583 -19.533 19.985 Atomic orbital electron populations 1.22422 1.00531 1.00453 0.99226 1.19244 0.89685 0.94342 0.86152 0.94683 1.21084 1.30371 1.12461 0.89444 0.91924 1.24930 0.95308 0.95198 0.98989 1.69882 1.37253 1.23211 1.23450 0.86556 0.79132 0.79672 0.81983 1.20294 1.21503 1.20358 1.60993 1.58107 1.09146 1.02034 1.21382 0.98484 0.94990 0.88670 0.91421 1.21698 0.97368 0.99481 0.96389 1.21923 1.03067 0.97503 0.94976 1.21451 0.90180 0.89506 0.99661 1.47330 1.35517 1.38378 1.12653 1.21193 0.98276 0.96010 0.84962 1.21742 1.03824 0.99893 0.91444 1.23338 0.75274 0.84498 0.84085 1.90743 1.47557 1.24226 1.77767 1.84543 1.60068 1.55231 1.33189 1.20609 0.79656 0.83621 0.84958 1.90675 1.36390 1.32191 1.83002 0.97734 0.94909 0.89567 0.93034 0.83915 0.90264 0.90344 0.91239 0.89699 0.91444 0.91088 0.89647 0.88340 0.87087 0.87559 0.73114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.85 37.16 0.33 -3.79 16 2 C 0.21 5.33 2.37 -68.86 -0.16 5.16 16 3 H 0.04 0.93 7.19 -51.93 -0.37 0.55 16 4 C -0.49 -13.72 8.84 -34.44 -0.30 -14.02 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.55 11.38 55.43 0.63 -24.92 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.67 -14.64 6.03 -102.40 -0.62 -15.26 16 13 C 0.08 1.38 2.52 -69.08 -0.17 1.21 16 14 H 0.07 1.25 7.19 -51.93 -0.37 0.87 16 15 C -0.11 -1.63 5.43 -26.52 -0.14 -1.78 16 16 C -0.14 -1.37 6.02 -26.59 -0.16 -1.53 16 17 C 0.11 1.06 6.32 -4.48 -0.03 1.03 16 18 N -0.61 -7.56 2.81 -174.95 -0.49 -8.06 16 19 C 0.12 1.36 4.51 -4.04 -0.02 1.34 16 20 C -0.13 -1.22 6.13 -27.88 -0.17 -1.39 16 21 C 0.49 4.85 8.33 36.00 0.30 5.15 16 22 O -0.51 -6.68 16.74 -18.75 -0.31 -6.99 16 23 O -0.52 -3.94 13.42 -39.27 -0.53 -4.47 16 24 C 0.52 8.71 7.18 -11.87 -0.09 8.63 16 25 O -0.55 -10.84 15.05 5.56 0.08 -10.76 16 26 H 0.00 0.08 7.47 -51.93 -0.39 -0.30 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.09 2.30 6.24 -51.93 -0.32 1.98 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.34 7.82 7.25 -39.29 -0.28 7.54 16 31 H 0.08 1.26 7.59 -51.93 -0.39 0.87 16 32 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 33 H 0.07 0.68 8.12 -51.92 -0.42 0.26 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.46 8.10 -51.94 -0.42 0.04 16 37 H 0.09 0.82 7.97 -51.93 -0.41 0.41 16 38 H 0.10 1.41 7.09 -51.93 -0.37 1.04 16 39 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.41 1.39 9.10 45.56 0.41 1.81 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -33.14 336.38 -7.33 -40.47 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.43 Total: 6.88 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.71 Total: 1.48 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.48 Total: -48.23 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.76 Total: -22.22 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.14 -7.33 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.022 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds