Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46763 * 2 1 4 4 C 1.50703 * 109.46723 * 119.99785 * 2 1 3 5 5 H 1.07994 * 119.99936 * 120.00255 * 4 2 1 6 6 C 1.37878 * 119.99597 * 299.99656 * 4 2 1 7 7 N 1.31506 * 120.00525 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99641 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47191 * 59.99827 * 8 6 4 10 10 H 1.48498 * 109.47299 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47240 * 300.00368 * 8 6 4 12 12 N 1.46897 * 109.46918 * 239.99772 * 2 1 3 13 13 C 1.46897 * 111.00219 * 86.44507 * 12 2 1 14 14 H 1.08994 * 109.32950 * 324.46271 * 13 12 2 15 15 C 1.53073 * 109.40151 * 84.24542 * 13 12 2 16 16 C 1.53343 * 108.42770 * 169.02875 * 15 13 12 17 17 C 1.52929 * 108.66513 * 292.45593 * 16 15 13 18 18 N 1.45762 * 110.47747 * 50.77916 * 17 16 15 19 19 C 1.46504 * 117.94587 * 160.91731 * 18 17 16 20 20 C 1.53008 * 109.46540 * 269.97686 * 19 18 17 21 21 C 1.50698 * 109.46577 * 179.97438 * 20 19 18 22 22 O 1.20824 * 120.00534 * 0.02562 * 21 20 19 23 23 O 1.34234 * 119.99993 * 179.97438 * 21 20 19 24 24 C 1.33350 * 124.10773 * 340.88749 * 18 17 16 25 25 O 1.21282 * 118.24735 * 182.22302 * 24 18 17 26 26 H 1.08997 * 109.46779 * 65.67489 * 1 2 3 27 27 H 1.08999 * 109.47053 * 185.67689 * 1 2 3 28 28 H 1.08996 * 109.46986 * 305.67668 * 1 2 3 29 29 H 0.97005 * 120.00527 * 179.97438 * 7 6 4 30 30 H 1.00903 * 111.00283 * 322.48648 * 12 2 1 31 31 H 1.09005 * 109.67392 * 288.76486 * 15 13 12 32 32 H 1.09000 * 109.67398 * 49.29364 * 15 13 12 33 33 H 1.09009 * 109.60173 * 52.22392 * 16 15 13 34 34 H 1.08997 * 109.60386 * 172.71025 * 16 15 13 35 35 H 1.09001 * 109.31552 * 290.46462 * 17 16 15 36 36 H 1.08989 * 109.30030 * 171.07950 * 17 16 15 37 37 H 1.09002 * 109.47227 * 29.97456 * 19 18 17 38 38 H 1.08994 * 109.47318 * 149.98033 * 19 18 17 39 39 H 1.08995 * 109.47068 * 300.00217 * 20 19 18 40 40 H 1.09001 * 109.46673 * 60.00223 * 20 19 18 41 41 H 0.96692 * 117.00343 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3223 -1.1193 4.0080 9 1 3.8073 -1.1189 4.0079 10 1 1.8267 -0.4196 5.2205 11 1 1.8278 -2.5195 4.0083 12 7 2.0197 -0.6925 -1.1994 13 6 2.1150 0.2304 -2.3382 14 1 1.2979 0.9501 -2.2887 15 6 3.4517 0.9740 -2.2796 16 6 3.6516 1.7171 -3.6060 17 6 3.8492 0.6871 -4.7190 18 7 2.7898 -0.3133 -4.6821 19 6 2.5582 -1.1129 -5.8876 20 6 1.5323 -0.4082 -6.7776 21 6 1.2945 -1.2303 -8.0180 22 8 1.8846 -2.2731 -8.1740 23 8 0.4264 -0.8047 -8.9491 24 6 2.0185 -0.5467 -3.6196 25 8 1.1946 -1.4338 -3.6922 26 1 -0.3633 0.4233 -0.9364 27 1 -0.3633 -1.0226 0.1017 28 1 -0.3633 0.5993 0.8348 29 1 0.7081 1.1611 3.4843 30 1 1.4357 -1.4843 -1.4235 31 1 3.4381 1.6889 -1.4569 32 1 4.2624 0.2604 -2.1329 33 1 2.7722 2.3242 -3.8212 34 1 4.5322 2.3558 -3.5383 35 1 4.8134 0.1957 -4.5884 36 1 3.8338 1.1926 -5.6845 37 1 3.4948 -1.2273 -6.4333 38 1 2.1800 -2.0953 -5.6050 39 1 0.5957 -0.2937 -6.2320 40 1 1.9105 0.5743 -7.0602 41 1 0.3069 -1.3661 -9.7272 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = -154.286496 kcal Electronic energy + Delta-G solvation = -23004.522084 eV Core-core repulsion = 19497.019937 eV Total energy + Delta-G solvation = -3507.502147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.86842 -41.11655 -37.98060 -37.59004 -37.13849 -35.44111 -33.88478 -31.80299 -30.79451 -28.28667 -27.24985 -26.48087 -24.36093 -23.33006 -22.17075 -21.59724 -19.79140 -19.10273 -18.64434 -17.97904 -17.65259 -17.08532 -16.93785 -16.89126 -16.34208 -15.68575 -15.24640 -15.13851 -14.67592 -14.58295 -14.36938 -14.10268 -13.95379 -13.70423 -13.41700 -13.21306 -12.84852 -12.73136 -12.58054 -12.54087 -12.34517 -12.21967 -12.13464 -12.02037 -11.90958 -11.76814 -11.70967 -11.04345 -10.64647 -10.48330 -9.81766 -9.10826 -8.10087 -6.20077 1.16451 1.43745 1.45838 1.48357 1.53795 1.70301 2.36748 2.45229 3.18915 3.48003 3.58126 3.71550 3.86670 3.97953 4.03921 4.18958 4.32000 4.32324 4.48848 4.63572 4.68985 4.70525 4.76973 4.84459 4.86497 4.95162 5.06418 5.11548 5.20117 5.33320 5.43132 5.48073 5.59313 5.66749 5.77873 6.22597 6.33904 6.57544 6.70068 6.91018 6.95756 7.07121 7.48944 8.96161 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.003497 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.044810 B = 8004.192099 C = 8320.530788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.221 3.779 3 H 0.018 0.982 4 C -0.518 4.518 5 H 0.052 0.948 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.276 1.276 12 N -0.674 5.674 13 C 0.073 3.927 14 H 0.059 0.941 15 C -0.107 4.107 16 C -0.126 4.126 17 C 0.106 3.894 18 N -0.592 5.592 19 C 0.119 3.881 20 C -0.124 4.124 21 C 0.493 3.507 22 O -0.550 6.550 23 O -0.513 6.513 24 C 0.522 3.478 25 O -0.588 6.588 26 H 0.021 0.979 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.262 0.738 30 H 0.332 0.668 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.142 0.858 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 4.555 -21.982 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.113 3.887 3 H 0.036 0.964 4 C -0.556 4.556 5 H 0.070 0.930 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.202 1.202 12 N -0.307 5.307 13 C -0.040 4.040 14 H 0.076 0.924 15 C -0.146 4.146 16 C -0.164 4.164 17 C -0.014 4.014 18 N -0.324 5.324 19 C -0.004 4.004 20 C -0.162 4.162 21 C 0.337 3.663 22 O -0.441 6.441 23 O -0.326 6.326 24 C 0.310 3.690 25 O -0.468 6.468 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.150 0.850 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.160 0.840 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 5.512 4.272 -21.407 22.514 hybrid contribution -1.227 -0.858 0.517 1.584 sum 4.285 3.414 -20.891 21.597 Atomic orbital electron populations 1.22246 1.00474 0.99447 0.99144 1.18982 0.89554 0.93233 0.86912 0.96446 1.21362 1.30751 1.12514 0.91018 0.93011 1.25669 0.95376 0.95847 1.01705 1.69991 1.37793 1.24129 1.24139 0.85583 0.78804 0.78493 0.78533 1.19606 1.20772 1.20175 1.60902 1.57330 1.09569 1.02877 1.21501 0.99993 0.94316 0.88161 0.92365 1.21658 0.95006 0.98899 0.99013 1.21914 1.04869 0.97556 0.92047 1.21830 0.89324 0.88773 1.01511 1.47341 1.34855 1.38473 1.11705 1.21233 0.99983 0.94469 0.84684 1.21654 1.02700 1.01138 0.90714 1.23351 0.74845 0.83756 0.84350 1.90741 1.49126 1.25658 1.78621 1.84497 1.58971 1.55480 1.33688 1.20324 0.80049 0.83113 0.85514 1.90657 1.38471 1.33979 1.83720 0.96045 0.95811 0.91662 0.92890 0.84993 0.92121 0.91305 0.90563 0.86555 0.90112 0.86629 0.87172 0.91902 0.88357 0.83989 0.70911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.82 8.85 71.98 0.64 -7.18 16 2 C 0.22 11.45 2.37 44.17 0.10 11.55 16 3 H 0.02 0.96 7.19 -2.39 -0.02 0.95 16 4 C -0.52 -29.43 8.84 25.60 0.23 -29.21 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.11 11.38 21.45 0.24 -52.86 16 8 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 N -0.67 -30.57 6.03 -477.89 -2.88 -33.45 16 13 C 0.07 2.64 2.52 44.03 0.11 2.75 16 14 H 0.06 2.20 7.19 -2.39 -0.02 2.18 16 15 C -0.11 -3.09 5.43 30.73 0.17 -2.93 16 16 C -0.13 -2.11 6.02 30.69 0.18 -1.93 16 17 C 0.11 1.52 6.32 86.49 0.55 2.07 16 18 N -0.59 -13.62 2.81 -826.60 -2.32 -15.95 16 19 C 0.12 2.51 4.51 86.38 0.39 2.90 16 20 C -0.12 -2.02 6.13 29.85 0.18 -1.84 16 21 C 0.49 8.91 8.33 71.24 0.59 9.50 16 22 O -0.55 -13.69 16.74 21.97 0.37 -13.32 16 23 O -0.51 -6.55 13.42 -51.46 -0.69 -7.24 16 24 C 0.52 17.36 7.18 87.71 0.63 17.99 16 25 O -0.59 -24.07 15.05 -3.04 -0.05 -24.11 16 26 H 0.02 0.96 7.47 -2.39 -0.02 0.95 16 27 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 3.58 6.24 -2.39 -0.01 3.57 16 29 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 30 H 0.33 15.89 7.25 -89.69 -0.65 15.24 16 31 H 0.06 1.95 7.59 -2.38 -0.02 1.94 16 32 H 0.07 2.10 8.13 -2.39 -0.02 2.08 16 33 H 0.08 1.23 8.12 -2.38 -0.02 1.21 16 34 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.12 0.77 8.10 -2.39 -0.02 0.75 16 37 H 0.11 1.79 7.97 -2.39 -0.02 1.77 16 38 H 0.06 1.81 7.09 -2.39 -0.02 1.80 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.43 1.92 9.10 -74.06 -0.67 1.25 16 Total: -1.00 -74.70 336.38 0.64 -74.06 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -0.27 Total: 21.48 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 4.22 Total: 4.83 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -4.96 Total: -102.26 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.37 Total: -44.68 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -74.70 0.64 -74.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.225 kcal (2) G-P(sol) polarization free energy of solvation -74.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds