Wall clock time and date at job start Tue Mar 31 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46952 * 2 1 4 4 C 1.50704 * 109.47046 * 120.01013 * 2 1 3 5 5 H 1.07992 * 119.99975 * 119.99928 * 4 2 1 6 6 C 1.37878 * 119.99528 * 299.99313 * 4 2 1 7 7 N 1.31507 * 120.00119 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99490 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47180 * 90.00228 * 8 6 4 10 10 H 1.48500 * 109.46898 * 210.00238 * 8 6 4 11 11 H 1.48499 * 109.47442 * 329.99912 * 8 6 4 12 12 N 1.46901 * 109.46818 * 240.00659 * 2 1 3 13 13 C 1.46895 * 111.00166 * 84.99980 * 12 2 1 14 14 H 1.09004 * 109.33370 * 325.21373 * 13 12 2 15 15 C 1.53076 * 109.40228 * 205.42845 * 13 12 2 16 16 C 1.53347 * 108.42372 * 190.96878 * 15 13 12 17 17 C 1.52745 * 108.81838 * 67.37468 * 16 15 13 18 18 N 1.45753 * 110.58341 * 309.60661 * 17 16 15 19 19 C 1.46506 * 117.94557 * 198.89627 * 18 17 16 20 20 C 1.53002 * 109.47035 * 269.74025 * 19 18 17 21 21 C 1.50696 * 109.47300 * 179.97438 * 20 19 18 22 22 O 1.20831 * 119.99620 * 359.97438 * 21 20 19 23 23 O 1.34230 * 120.00138 * 179.97438 * 21 20 19 24 24 C 1.33351 * 124.10928 * 18.61499 * 18 17 16 25 25 O 1.21282 * 118.24519 * 178.03504 * 24 18 17 26 26 H 1.09004 * 109.47560 * 59.99453 * 1 2 3 27 27 H 1.09003 * 109.47171 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47046 * 299.99209 * 1 2 3 29 29 H 0.97004 * 120.00099 * 179.97438 * 7 6 4 30 30 H 1.00903 * 110.99959 * 208.95575 * 12 2 1 31 31 H 1.08995 * 109.67519 * 310.70318 * 15 13 12 32 32 H 1.08997 * 109.67109 * 71.20132 * 15 13 12 33 33 H 1.09005 * 109.59975 * 187.28712 * 16 15 13 34 34 H 1.08997 * 109.60785 * 307.61103 * 16 15 13 35 35 H 1.09000 * 109.39157 * 189.17196 * 17 16 15 36 36 H 1.08997 * 109.10604 * 69.85064 * 17 16 15 37 37 H 1.09004 * 109.47073 * 29.73707 * 19 18 17 38 38 H 1.09000 * 109.47212 * 149.73790 * 19 18 17 39 39 H 1.09004 * 109.46930 * 299.99770 * 20 19 18 40 40 H 1.09004 * 109.47059 * 59.99372 * 20 19 18 41 41 H 0.96702 * 116.99993 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9429 0.8294 2.6034 8 14 2.3225 -1.1201 4.0077 9 1 3.6306 -0.5447 4.4117 10 1 1.3445 -0.9496 5.1121 11 1 2.4879 -2.5659 3.7119 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 1 1.2589 0.9344 -2.2863 15 6 1.9659 -0.5803 -3.6449 16 6 2.3073 0.3447 -4.8193 17 6 3.7875 0.7137 -4.7417 18 7 4.1272 1.1917 -3.4073 19 6 5.3559 1.9739 -3.2504 20 6 6.5233 1.0337 -2.9435 21 6 7.7874 1.8382 -2.7826 22 8 7.7577 3.0403 -2.9018 23 8 8.9463 1.2195 -2.5070 24 6 3.3870 0.9661 -2.3213 25 8 3.7890 1.3834 -1.2559 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 0.7083 1.1605 3.4845 30 1 2.9172 -1.1205 -1.0289 31 1 2.6635 -1.4174 -3.6223 32 1 0.9479 -0.9538 -3.7551 33 1 2.1062 -0.1687 -5.7596 34 1 1.7025 1.2495 -4.7601 35 1 4.0044 1.4949 -5.4703 36 1 4.3873 -0.1666 -4.9726 37 1 5.5605 2.5181 -4.1724 38 1 5.2340 2.6815 -2.4303 39 1 6.3188 0.4895 -2.0214 40 1 6.6453 0.3261 -3.7636 41 1 9.7303 1.7777 -2.4125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:21 Heat of formation + Delta-G solvation = -127.491396 kcal Electronic energy + Delta-G solvation = -23357.408870 eV Core-core repulsion = 19851.068645 eV Total energy + Delta-G solvation = -3506.340224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69182 -40.08926 -36.52957 -36.22800 -35.98629 -33.92806 -32.13391 -30.63727 -29.26032 -26.87606 -25.40283 -25.06078 -23.02083 -22.16696 -21.08379 -19.79899 -18.56491 -18.17804 -17.03268 -16.82681 -16.35398 -15.96352 -15.81833 -15.23994 -14.83946 -14.02397 -14.00321 -13.82815 -13.60135 -13.31458 -13.15770 -12.84134 -12.50329 -12.30909 -11.76395 -11.70611 -11.46421 -11.33090 -11.17956 -11.04337 -10.88255 -10.76821 -10.72841 -10.58455 -10.28331 -10.07981 -9.84623 -9.45081 -8.73993 -8.66542 -8.38903 -7.29950 -5.91462 -3.95738 2.05555 2.67332 3.00634 3.33906 3.36954 3.42572 3.45830 4.48440 4.65117 4.68303 4.72005 4.80167 4.98239 5.04237 5.17278 5.26967 5.32611 5.41077 5.44902 5.62560 5.68545 5.79546 5.85719 5.88653 5.94596 6.22855 6.32319 6.37193 6.54152 6.92116 7.21996 7.24580 7.54193 7.60550 7.71934 7.85518 8.01380 8.28447 8.38842 8.51787 8.67897 9.10939 9.67853 11.15629 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.005231 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.524926 B = 5351.385368 C = 6842.206785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.206 3.794 3 H 0.024 0.976 4 C -0.509 4.509 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.658 5.658 13 C 0.079 3.921 14 H 0.102 0.898 15 C -0.109 4.109 16 C -0.136 4.136 17 C 0.116 3.884 18 N -0.611 5.611 19 C 0.120 3.880 20 C -0.130 4.130 21 C 0.487 3.513 22 O -0.517 6.517 23 O -0.518 6.518 24 C 0.481 3.519 25 O -0.520 6.520 26 H 0.002 0.998 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.259 0.741 30 H 0.334 0.666 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.754 -0.546 -17.747 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.099 3.901 3 H 0.042 0.958 4 C -0.548 4.548 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.288 5.288 13 C -0.035 4.035 14 H 0.119 0.881 15 C -0.148 4.148 16 C -0.174 4.174 17 C -0.007 4.007 18 N -0.346 5.346 19 C -0.004 4.004 20 C -0.168 4.168 21 C 0.329 3.671 22 O -0.406 6.406 23 O -0.329 6.329 24 C 0.268 3.732 25 O -0.394 6.394 26 H 0.021 0.979 27 H 0.049 0.951 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.151 0.849 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.132 0.868 40 H 0.123 0.877 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 7.833 -0.401 -17.221 18.923 hybrid contribution 1.734 0.474 1.108 2.111 sum 9.566 0.073 -16.114 18.740 Atomic orbital electron populations 1.21768 0.98135 0.99207 0.99314 1.19266 0.91953 0.93951 0.84952 0.95789 1.21154 1.31024 1.12132 0.90483 0.92570 1.24866 0.95181 0.95019 0.98886 1.69890 1.36887 1.22954 1.23219 0.86557 0.78496 0.79951 0.82715 1.20859 1.21289 1.19955 1.61137 1.31514 1.29928 1.06258 1.21684 0.92778 0.94655 0.94416 0.88066 1.21669 1.03194 0.97839 0.92062 1.21861 0.94885 1.00864 0.99815 1.21347 0.96765 0.99191 0.83418 1.47626 1.23362 1.55113 1.08536 1.21179 0.82367 0.92994 1.03820 1.21744 0.89182 0.99712 1.06207 1.23389 0.85037 0.87039 0.71654 1.90731 1.86525 1.16298 1.47022 1.84553 1.19417 1.46054 1.82922 1.22037 0.87663 0.80274 0.83271 1.90818 1.71088 1.49082 1.28426 0.97930 0.95056 0.89981 0.93089 0.84856 0.91280 0.90259 0.89907 0.91057 0.91100 0.92090 0.90034 0.88687 0.86808 0.87725 0.73231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.17 37.16 0.34 -2.83 16 2 C 0.21 5.37 2.12 -68.86 -0.15 5.23 16 3 H 0.02 0.72 6.52 -51.93 -0.34 0.38 16 4 C -0.51 -14.54 8.59 -34.44 -0.30 -14.83 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -26.53 11.32 55.43 0.63 -25.91 16 8 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.66 -14.00 5.95 -102.40 -0.61 -14.61 16 13 C 0.08 1.37 2.56 -69.08 -0.18 1.19 16 14 H 0.10 1.88 7.10 -51.93 -0.37 1.51 16 15 C -0.11 -1.35 5.64 -26.51 -0.15 -1.50 16 16 C -0.14 -1.24 6.01 -26.68 -0.16 -1.40 16 17 C 0.12 1.05 6.38 -4.58 -0.03 1.02 16 18 N -0.61 -8.06 2.81 -175.07 -0.49 -8.56 16 19 C 0.12 1.54 4.49 -4.04 -0.02 1.52 16 20 C -0.13 -1.46 6.13 -27.88 -0.17 -1.64 16 21 C 0.49 5.75 8.33 36.00 0.30 6.05 16 22 O -0.52 -7.57 16.74 -18.75 -0.31 -7.88 16 23 O -0.52 -4.88 13.42 -39.26 -0.53 -5.41 16 24 C 0.48 8.55 6.92 -11.87 -0.08 8.47 16 25 O -0.52 -11.89 14.27 5.56 0.08 -11.82 16 26 H 0.00 0.04 7.42 -51.93 -0.39 -0.35 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.33 7.23 7.95 -39.29 -0.31 6.91 16 31 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 35 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.87 7.81 -51.93 -0.41 0.46 16 38 H 0.09 1.54 7.16 -51.93 -0.37 1.16 16 39 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.41 2.08 9.10 45.56 0.41 2.50 16 LS Contribution 335.12 15.07 5.05 5.05 Total: -1.00 -35.06 335.12 -7.30 -42.35 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.41 Total: 6.63 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -0.68 Total: 2.97 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.47 Total: -49.07 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.76 Total: -25.10 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.06 -7.30 -42.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.137 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds