Wall clock time and date at job start Tue Mar 31 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46952 * 2 1 4 4 C 1.50704 * 109.47046 * 120.01013 * 2 1 3 5 5 H 1.07992 * 119.99975 * 119.99928 * 4 2 1 6 6 C 1.37878 * 119.99528 * 299.99313 * 4 2 1 7 7 N 1.31507 * 120.00119 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99490 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47180 * 90.00228 * 8 6 4 10 10 H 1.48500 * 109.46898 * 210.00238 * 8 6 4 11 11 H 1.48499 * 109.47442 * 329.99912 * 8 6 4 12 12 N 1.46901 * 109.46818 * 240.00659 * 2 1 3 13 13 C 1.46895 * 111.00166 * 84.99980 * 12 2 1 14 14 H 1.09004 * 109.33370 * 325.21373 * 13 12 2 15 15 C 1.53076 * 109.40228 * 205.42845 * 13 12 2 16 16 C 1.53347 * 108.42372 * 190.96878 * 15 13 12 17 17 C 1.52745 * 108.81838 * 67.37468 * 16 15 13 18 18 N 1.45753 * 110.58341 * 309.60661 * 17 16 15 19 19 C 1.46506 * 117.94557 * 198.89627 * 18 17 16 20 20 C 1.53002 * 109.47035 * 269.74025 * 19 18 17 21 21 C 1.50696 * 109.47300 * 179.97438 * 20 19 18 22 22 O 1.20831 * 119.99620 * 359.97438 * 21 20 19 23 23 O 1.34230 * 120.00138 * 179.97438 * 21 20 19 24 24 C 1.33351 * 124.10928 * 18.61499 * 18 17 16 25 25 O 1.21282 * 118.24519 * 178.03504 * 24 18 17 26 26 H 1.09004 * 109.47560 * 59.99453 * 1 2 3 27 27 H 1.09003 * 109.47171 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47046 * 299.99209 * 1 2 3 29 29 H 0.97004 * 120.00099 * 179.97438 * 7 6 4 30 30 H 1.00903 * 110.99959 * 208.95575 * 12 2 1 31 31 H 1.08995 * 109.67519 * 310.70318 * 15 13 12 32 32 H 1.08997 * 109.67109 * 71.20132 * 15 13 12 33 33 H 1.09005 * 109.59975 * 187.28712 * 16 15 13 34 34 H 1.08997 * 109.60785 * 307.61103 * 16 15 13 35 35 H 1.09000 * 109.39157 * 189.17196 * 17 16 15 36 36 H 1.08997 * 109.10604 * 69.85064 * 17 16 15 37 37 H 1.09004 * 109.47073 * 29.73707 * 19 18 17 38 38 H 1.09000 * 109.47212 * 149.73790 * 19 18 17 39 39 H 1.09004 * 109.46930 * 299.99770 * 20 19 18 40 40 H 1.09004 * 109.47059 * 59.99372 * 20 19 18 41 41 H 0.96702 * 116.99993 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9429 0.8294 2.6034 8 14 2.3225 -1.1201 4.0077 9 1 3.6306 -0.5447 4.4117 10 1 1.3445 -0.9496 5.1121 11 1 2.4879 -2.5659 3.7119 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 1 1.2589 0.9344 -2.2863 15 6 1.9659 -0.5803 -3.6449 16 6 2.3073 0.3447 -4.8193 17 6 3.7875 0.7137 -4.7417 18 7 4.1272 1.1917 -3.4073 19 6 5.3559 1.9739 -3.2504 20 6 6.5233 1.0337 -2.9435 21 6 7.7874 1.8382 -2.7826 22 8 7.7577 3.0403 -2.9018 23 8 8.9463 1.2195 -2.5070 24 6 3.3870 0.9661 -2.3213 25 8 3.7890 1.3834 -1.2559 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 0.7083 1.1605 3.4845 30 1 2.9172 -1.1205 -1.0289 31 1 2.6635 -1.4174 -3.6223 32 1 0.9479 -0.9538 -3.7551 33 1 2.1062 -0.1687 -5.7596 34 1 1.7025 1.2495 -4.7601 35 1 4.0044 1.4949 -5.4703 36 1 4.3873 -0.1666 -4.9726 37 1 5.5605 2.5181 -4.1724 38 1 5.2340 2.6815 -2.4303 39 1 6.3188 0.4895 -2.0214 40 1 6.6453 0.3261 -3.7636 41 1 9.7303 1.7777 -2.4125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:21 Heat of formation + Delta-G solvation = -154.818964 kcal Electronic energy + Delta-G solvation = -23358.593882 eV Core-core repulsion = 19851.068645 eV Total energy + Delta-G solvation = -3507.525237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.85248 -41.14389 -37.83012 -37.47809 -37.17356 -35.46431 -33.84220 -31.82195 -30.78263 -28.38640 -27.20831 -26.43800 -24.26278 -23.21130 -22.03965 -21.77657 -19.72112 -19.16262 -18.47489 -17.99925 -17.78059 -17.23973 -16.92408 -16.81815 -16.34561 -15.61050 -15.29632 -15.10631 -14.60094 -14.51283 -14.37941 -14.23672 -14.05283 -13.50218 -13.31080 -12.91464 -12.85804 -12.67658 -12.60543 -12.59033 -12.31057 -12.19681 -12.17430 -12.05414 -11.84104 -11.73885 -11.53269 -10.94021 -10.80043 -10.55945 -9.76666 -9.08363 -8.11223 -6.23436 1.12212 1.38508 1.40002 1.50389 1.57790 1.77018 2.37237 2.41598 3.17931 3.49868 3.62904 3.70766 3.89397 3.98143 4.08232 4.20303 4.29846 4.41092 4.48124 4.65158 4.70580 4.76113 4.88273 4.88690 4.96101 5.10009 5.14013 5.22607 5.26202 5.39266 5.49797 5.54501 5.55860 5.67513 5.92136 6.23144 6.36784 6.42406 6.71647 6.92302 6.95803 7.21820 7.44459 8.95215 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.005231 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.524926 B = 5351.385368 C = 6842.206785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H -0.022 1.022 4 C -0.529 4.529 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.263 1.263 12 N -0.652 5.652 13 C 0.075 3.925 14 H 0.083 0.917 15 C -0.099 4.099 16 C -0.128 4.128 17 C 0.104 3.896 18 N -0.596 5.596 19 C 0.121 3.879 20 C -0.123 4.123 21 C 0.493 3.507 22 O -0.551 6.551 23 O -0.512 6.512 24 C 0.478 3.522 25 O -0.586 6.586 26 H 0.023 0.977 27 H 0.033 0.967 28 H 0.054 0.946 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.143 0.857 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.730 -2.134 -20.417 22.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.004 1.004 4 C -0.567 4.567 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.209 1.209 10 H -0.205 1.205 11 H -0.187 1.187 12 N -0.280 5.280 13 C -0.039 4.039 14 H 0.101 0.899 15 C -0.138 4.138 16 C -0.166 4.166 17 C -0.017 4.017 18 N -0.329 5.329 19 C -0.003 4.003 20 C -0.161 4.161 21 C 0.337 3.663 22 O -0.442 6.442 23 O -0.326 6.326 24 C 0.266 3.734 25 O -0.465 6.465 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.161 0.839 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 8.837 -2.012 -19.975 21.935 hybrid contribution 1.499 1.009 1.835 2.575 sum 10.336 -1.003 -18.140 20.902 Atomic orbital electron populations 1.21558 0.97535 0.99066 0.98973 1.18956 0.92328 0.91630 0.86563 1.00397 1.21528 1.31100 1.12245 0.91875 0.92749 1.25733 0.95382 0.95781 1.02078 1.70037 1.37859 1.24235 1.23876 0.85517 0.77764 0.79212 0.78877 1.20892 1.20475 1.18729 1.61072 1.31160 1.30346 1.05466 1.21829 0.92142 0.94663 0.95282 0.89934 1.21633 1.03910 0.97972 0.90243 1.21888 0.94706 1.00222 0.99813 1.21821 0.97306 1.01401 0.81162 1.47604 1.22587 1.53594 1.09154 1.21184 0.82677 0.92811 1.03604 1.21651 0.88438 0.99585 1.06466 1.23386 0.85692 0.86433 0.70817 1.90726 1.87098 1.17627 1.48734 1.84505 1.19646 1.46246 1.82160 1.21983 0.88011 0.79910 0.83537 1.90797 1.72631 1.51874 1.31189 0.95812 0.94822 0.92753 0.93068 0.85369 0.90466 0.89795 0.85852 0.91549 0.87965 0.89174 0.87038 0.93042 0.89137 0.83926 0.70950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.86 9.17 71.98 0.66 -5.20 16 2 C 0.21 11.65 2.12 44.17 0.09 11.74 16 3 H -0.02 -1.37 6.52 -2.39 -0.02 -1.39 16 4 C -0.53 -31.16 8.59 25.60 0.22 -30.95 16 5 H 0.05 3.13 7.62 -2.91 -0.02 3.11 16 6 C 0.01 0.51 5.30 84.66 0.45 0.96 16 7 N -0.92 -56.77 11.32 21.45 0.24 -56.53 16 8 Si 0.96 46.36 29.54 68.60 2.03 48.38 16 9 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 12 N -0.65 -28.38 5.95 -477.89 -2.84 -31.23 16 13 C 0.07 2.62 2.56 44.03 0.11 2.73 16 14 H 0.08 3.17 7.10 -2.38 -0.02 3.15 16 15 C -0.10 -2.22 5.64 30.74 0.17 -2.05 16 16 C -0.13 -1.81 6.01 30.63 0.18 -1.62 16 17 C 0.10 1.43 6.38 86.44 0.55 1.98 16 18 N -0.60 -14.90 2.81 -826.97 -2.33 -17.23 16 19 C 0.12 3.00 4.49 86.38 0.39 3.39 16 20 C -0.12 -2.62 6.13 29.85 0.18 -2.43 16 21 C 0.49 11.13 8.33 71.23 0.59 11.72 16 22 O -0.55 -15.90 16.74 21.95 0.37 -15.53 16 23 O -0.51 -8.72 13.42 -51.41 -0.69 -9.41 16 24 C 0.48 17.41 6.92 87.71 0.61 18.02 16 25 O -0.59 -28.61 14.27 -3.04 -0.04 -28.65 16 26 H 0.02 1.07 7.42 -2.38 -0.02 1.05 16 27 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 3.12 6.07 -2.39 -0.01 3.10 16 29 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.33 14.68 7.95 -89.69 -0.71 13.96 16 31 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 35 H 0.10 0.90 7.92 -2.39 -0.02 0.88 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 2.09 7.81 -2.38 -0.02 2.07 16 38 H 0.05 1.75 7.16 -2.39 -0.02 1.74 16 39 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.43 3.56 9.10 -74.06 -0.67 2.89 16 Total: -1.00 -81.98 335.12 0.62 -81.37 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.33 Total: 20.54 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 4.22 Total: 8.29 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -4.93 Total: -104.98 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -0.37 Total: -53.59 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -81.98 0.62 -81.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.453 kcal (2) G-P(sol) polarization free energy of solvation -81.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds