Wall clock time and date at job start Tue Mar 31 2020 06:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46988 * 2 1 4 4 C 1.52998 * 109.47079 * 119.99612 * 2 1 3 5 5 C 1.50695 * 109.47559 * 295.00113 * 4 2 1 6 6 O 1.20826 * 119.99868 * 0.02562 * 5 4 2 7 7 O 1.34227 * 120.00376 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.47124 * 239.99736 * 2 1 3 9 9 O 1.21284 * 119.99978 * 334.24639 * 8 2 1 10 10 N 1.34772 * 120.00087 * 154.24021 * 8 2 1 11 11 C 1.47084 * 120.87859 * 5.06020 * 10 8 2 12 12 C 1.53703 * 108.27500 * 128.75252 * 11 10 8 13 13 N 1.46897 * 109.25729 * 54.07948 * 12 11 10 14 14 C 1.46901 * 111.00050 * 172.60536 * 13 12 11 15 15 C 1.50705 * 109.47308 * 294.30594 * 14 13 12 16 16 H 1.08002 * 119.99514 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99982 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00104 * 179.97438 * 17 15 14 19 19 Si 1.86792 * 120.00106 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47217 * 90.00239 * 19 17 15 21 21 H 1.48505 * 109.47075 * 209.99949 * 19 17 15 22 22 H 1.48498 * 109.47461 * 330.00016 * 19 17 15 23 23 C 1.46898 * 111.26979 * 296.75517 * 13 12 11 24 24 C 1.47078 * 120.88431 * 185.33164 * 10 8 2 25 25 H 1.09001 * 109.47419 * 55.29575 * 1 2 3 26 26 H 1.09002 * 109.47706 * 175.29606 * 1 2 3 27 27 H 1.09006 * 109.47121 * 295.29480 * 1 2 3 28 28 H 1.09001 * 109.47359 * 174.99574 * 4 2 1 29 29 H 1.09006 * 109.47059 * 55.00526 * 4 2 1 30 30 H 0.96702 * 117.00145 * 179.97438 * 7 5 4 31 31 H 1.09000 * 109.62579 * 248.51343 * 11 10 8 32 32 H 1.08994 * 109.62998 * 9.09654 * 11 10 8 33 33 H 1.09000 * 109.64740 * 294.07223 * 12 11 10 34 34 H 1.08999 * 109.41842 * 173.94353 * 12 11 10 35 35 H 1.09008 * 109.46785 * 54.29886 * 14 13 12 36 36 H 1.08993 * 109.47600 * 174.29967 * 14 13 12 37 37 H 0.96996 * 120.00074 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.49472 * 303.14443 * 23 13 12 39 39 H 1.09000 * 109.51589 * 183.07949 * 23 13 12 40 40 H 1.09003 * 109.62876 * 350.90329 * 24 10 8 41 41 H 1.08996 * 109.62800 * 111.47808 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0133 1.0831 2.3637 7 8 1.9830 -0.3900 3.6952 8 6 2.0323 -0.7105 -1.2304 9 8 1.3425 -1.5493 -1.7704 10 7 3.2480 -0.4137 -1.7308 11 6 4.1454 0.5182 -1.0311 12 6 5.5172 -0.1577 -0.8772 13 7 5.9891 -0.6018 -2.1955 14 6 7.3709 -1.0950 -2.1214 15 6 8.2925 0.0436 -1.7673 16 1 7.8918 1.0346 -1.6132 17 6 9.6470 -0.1799 -1.6401 18 7 10.4513 0.8138 -1.3315 19 14 10.3398 -1.8941 -1.9060 20 1 10.6976 -2.0670 -3.3369 21 1 11.5522 -2.0736 -1.0674 22 1 9.3205 -2.9046 -1.5251 23 6 5.0967 -1.6196 -2.7659 24 6 3.7101 -1.0084 -2.9941 25 1 -0.3634 0.5851 -0.8448 26 1 -0.3634 -1.0242 -0.0843 27 1 -0.3634 0.4391 0.9292 28 1 3.1263 -0.7995 1.2056 29 1 1.6054 -1.7198 1.2952 30 1 1.7053 0.1436 4.4524 31 1 4.2483 1.4340 -1.6131 32 1 3.7376 0.7501 -0.0473 33 1 5.4296 -1.0179 -0.2135 34 1 6.2273 0.5549 -0.4578 35 1 7.4397 -1.8693 -1.3572 36 1 7.6607 -1.5104 -3.0865 37 1 11.4043 0.6567 -1.2424 38 1 5.0149 -2.4595 -2.0760 39 1 5.5016 -1.9677 -3.7162 40 1 3.0143 -1.7862 -3.3088 41 1 3.7719 -0.2365 -3.7612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592345188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:59 Heat of formation + Delta-G solvation = -118.831887 kcal Electronic energy + Delta-G solvation = -23239.035999 eV Core-core repulsion = 19733.071279 eV Total energy + Delta-G solvation = -3505.964720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91250 -39.98033 -37.78712 -36.55479 -34.70844 -34.36973 -32.41949 -30.87050 -28.86642 -28.60596 -26.09733 -24.34315 -23.27029 -21.99133 -21.22589 -20.29252 -18.71967 -18.20988 -17.61433 -16.89514 -16.61221 -16.25640 -15.63074 -15.18506 -14.73191 -14.61793 -14.54352 -13.87330 -13.78694 -13.59197 -13.44283 -13.04459 -12.69996 -12.45516 -12.32217 -12.23565 -11.67146 -11.57258 -11.50340 -11.32385 -11.23166 -11.11150 -10.87503 -10.76412 -10.62813 -10.38573 -9.96235 -9.70290 -9.39461 -8.64955 -8.58754 -7.53044 -6.13239 -4.11597 1.90531 2.36644 2.81122 3.10042 3.23015 3.31019 3.32274 4.30611 4.34917 4.44618 4.53109 4.56300 4.96848 5.10287 5.14444 5.18105 5.23701 5.25702 5.34863 5.41887 5.50723 5.63539 5.69537 5.75781 5.85744 5.90838 6.06076 6.11195 6.26742 6.29298 6.34900 6.53144 6.74353 6.86115 7.40894 7.47697 7.59657 7.75297 7.88935 8.13670 8.54719 8.93557 9.48154 10.99527 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.004234 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.812412 B = 6610.830709 C = 7468.637691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.104 0.896 4 C -0.109 4.109 5 C 0.485 3.515 6 O -0.510 6.510 7 O -0.515 6.515 8 C 0.520 3.480 9 O -0.544 6.544 10 N -0.607 5.607 11 C 0.105 3.895 12 C 0.050 3.950 13 N -0.526 5.526 14 C 0.163 3.837 15 C -0.513 4.513 16 H 0.082 0.918 17 C 0.070 3.930 18 N -0.898 5.898 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.269 1.269 23 C 0.038 3.962 24 C 0.117 3.883 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.412 0.588 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.104 0.896 35 H -0.011 1.011 36 H 0.026 0.974 37 H 0.264 0.736 38 H 0.028 0.972 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.048 -2.783 5.905 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.122 0.878 4 C -0.147 4.147 5 C 0.327 3.673 6 O -0.398 6.398 7 O -0.327 6.327 8 C 0.307 3.693 9 O -0.422 6.422 10 N -0.340 5.340 11 C -0.018 4.018 12 C -0.079 4.079 13 N -0.251 5.251 14 C 0.037 3.963 15 C -0.551 4.551 16 H 0.100 0.900 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.193 1.193 23 C -0.091 4.091 24 C -0.005 4.005 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.271 0.729 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.122 0.878 35 H 0.007 0.993 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.258 -2.739 4.960 18.164 hybrid contribution 0.605 -1.143 0.897 1.574 sum -16.653 -3.882 5.858 18.075 Atomic orbital electron populations 1.21791 0.91775 1.03071 1.03200 1.21150 0.99039 1.00813 0.91061 0.87790 1.21330 1.04593 1.00515 0.88272 1.23254 0.75629 0.83718 0.84690 1.90716 1.37397 1.24653 1.87048 1.84543 1.74755 1.56368 1.17046 1.20395 0.80898 0.82503 0.85495 1.90667 1.56457 1.33295 1.61749 1.48286 1.15639 1.45676 1.24388 1.22191 0.89838 0.92920 0.96807 1.22461 0.94732 0.99706 0.91043 1.61883 1.03246 1.37256 1.22702 1.20183 0.84584 0.95828 0.95751 1.20996 0.90846 0.95971 1.47295 0.90050 1.24885 0.96942 0.96616 0.94728 1.69885 1.04148 1.31152 1.48491 0.86877 0.78890 0.85438 0.78625 1.20089 1.21162 1.19341 1.22455 0.92750 0.93502 1.00388 1.21758 0.95077 0.98558 0.85119 0.92075 0.91620 0.90578 0.86859 0.86731 0.72941 0.90101 0.90135 0.95570 0.87783 0.99318 0.95576 0.92569 0.95405 0.89993 0.89228 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.61 37.16 0.32 -1.19 16 2 C -0.10 -1.08 1.51 -91.77 -0.14 -1.22 16 3 H 0.10 1.09 6.59 -51.93 -0.34 0.75 16 4 C -0.11 -1.02 4.98 -27.89 -0.14 -1.16 16 5 C 0.48 4.60 8.01 36.00 0.29 4.89 16 6 O -0.51 -6.01 14.75 -18.75 -0.28 -6.29 16 7 O -0.52 -3.90 13.42 -39.25 -0.53 -4.43 16 8 C 0.52 7.08 6.80 -10.99 -0.07 7.01 16 9 O -0.54 -8.97 15.46 5.55 0.09 -8.88 16 10 N -0.61 -8.38 3.00 -172.18 -0.52 -8.89 16 11 C 0.11 1.39 6.15 -3.36 -0.02 1.37 16 12 C 0.05 0.83 5.47 -3.46 -0.02 0.81 16 13 N -0.53 -10.10 4.62 -235.46 -1.09 -11.19 16 14 C 0.16 3.72 3.79 -4.97 -0.02 3.70 16 15 C -0.51 -13.77 8.96 -34.44 -0.31 -14.07 16 16 H 0.08 2.36 7.37 -52.49 -0.39 1.97 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -26.54 13.96 55.43 0.77 -25.76 16 19 Si 0.87 20.76 27.47 -169.99 -4.67 16.10 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 23 C 0.04 0.62 5.62 -3.70 -0.02 0.60 16 24 C 0.12 1.68 6.61 -3.60 -0.02 1.65 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.73 7.69 -51.93 -0.40 0.33 16 27 H 0.08 0.81 5.89 -51.93 -0.31 0.50 16 28 H 0.11 1.02 7.20 -51.93 -0.37 0.64 16 29 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.41 1.39 9.10 45.56 0.41 1.81 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 0.86 4.95 -51.93 -0.26 0.61 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 1.95 6.67 -51.93 -0.35 1.60 16 35 H -0.01 -0.25 7.18 -51.92 -0.37 -0.63 16 36 H 0.03 0.60 7.40 -51.93 -0.38 0.22 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 1.26 7.99 -51.93 -0.41 0.84 16 40 H 0.09 1.27 7.04 -51.93 -0.37 0.90 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -32.95 327.65 -6.77 -39.72 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.24 Total: 0.45 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.25 Total: 4.24 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.83 Total: -45.84 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.72 Total: -19.60 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.95 -6.77 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592345188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.111 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds