Wall clock time and date at job start Tue Mar 31 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46988 * 2 1 4 4 C 1.52998 * 109.47079 * 119.99612 * 2 1 3 5 5 C 1.50695 * 109.47559 * 295.00113 * 4 2 1 6 6 O 1.20826 * 119.99868 * 0.02562 * 5 4 2 7 7 O 1.34227 * 120.00376 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.47124 * 239.99736 * 2 1 3 9 9 O 1.21284 * 119.99978 * 334.24639 * 8 2 1 10 10 N 1.34772 * 120.00087 * 154.24021 * 8 2 1 11 11 C 1.47084 * 120.87859 * 5.06020 * 10 8 2 12 12 C 1.53703 * 108.27500 * 128.75252 * 11 10 8 13 13 N 1.46897 * 109.25729 * 54.07948 * 12 11 10 14 14 C 1.46901 * 111.00050 * 172.60536 * 13 12 11 15 15 C 1.50705 * 109.47308 * 294.30594 * 14 13 12 16 16 H 1.08002 * 119.99514 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99982 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00104 * 179.97438 * 17 15 14 19 19 Si 1.86792 * 120.00106 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47217 * 90.00239 * 19 17 15 21 21 H 1.48505 * 109.47075 * 209.99949 * 19 17 15 22 22 H 1.48498 * 109.47461 * 330.00016 * 19 17 15 23 23 C 1.46898 * 111.26979 * 296.75517 * 13 12 11 24 24 C 1.47078 * 120.88431 * 185.33164 * 10 8 2 25 25 H 1.09001 * 109.47419 * 55.29575 * 1 2 3 26 26 H 1.09002 * 109.47706 * 175.29606 * 1 2 3 27 27 H 1.09006 * 109.47121 * 295.29480 * 1 2 3 28 28 H 1.09001 * 109.47359 * 174.99574 * 4 2 1 29 29 H 1.09006 * 109.47059 * 55.00526 * 4 2 1 30 30 H 0.96702 * 117.00145 * 179.97438 * 7 5 4 31 31 H 1.09000 * 109.62579 * 248.51343 * 11 10 8 32 32 H 1.08994 * 109.62998 * 9.09654 * 11 10 8 33 33 H 1.09000 * 109.64740 * 294.07223 * 12 11 10 34 34 H 1.08999 * 109.41842 * 173.94353 * 12 11 10 35 35 H 1.09008 * 109.46785 * 54.29886 * 14 13 12 36 36 H 1.08993 * 109.47600 * 174.29967 * 14 13 12 37 37 H 0.96996 * 120.00074 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.49472 * 303.14443 * 23 13 12 39 39 H 1.09000 * 109.51589 * 183.07949 * 23 13 12 40 40 H 1.09003 * 109.62876 * 350.90329 * 24 10 8 41 41 H 1.08996 * 109.62800 * 111.47808 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0133 1.0831 2.3637 7 8 1.9830 -0.3900 3.6952 8 6 2.0323 -0.7105 -1.2304 9 8 1.3425 -1.5493 -1.7704 10 7 3.2480 -0.4137 -1.7308 11 6 4.1454 0.5182 -1.0311 12 6 5.5172 -0.1577 -0.8772 13 7 5.9891 -0.6018 -2.1955 14 6 7.3709 -1.0950 -2.1214 15 6 8.2925 0.0436 -1.7673 16 1 7.8918 1.0346 -1.6132 17 6 9.6470 -0.1799 -1.6401 18 7 10.4513 0.8138 -1.3315 19 14 10.3398 -1.8941 -1.9060 20 1 10.6976 -2.0670 -3.3369 21 1 11.5522 -2.0736 -1.0674 22 1 9.3205 -2.9046 -1.5251 23 6 5.0967 -1.6196 -2.7659 24 6 3.7101 -1.0084 -2.9941 25 1 -0.3634 0.5851 -0.8448 26 1 -0.3634 -1.0242 -0.0843 27 1 -0.3634 0.4391 0.9292 28 1 3.1263 -0.7995 1.2056 29 1 1.6054 -1.7198 1.2952 30 1 1.7053 0.1436 4.4524 31 1 4.2483 1.4340 -1.6131 32 1 3.7376 0.7501 -0.0473 33 1 5.4296 -1.0179 -0.2135 34 1 6.2273 0.5549 -0.4578 35 1 7.4397 -1.8693 -1.3572 36 1 7.6607 -1.5104 -3.0865 37 1 11.4043 0.6567 -1.2424 38 1 5.0149 -2.4595 -2.0760 39 1 5.5016 -1.9677 -3.7162 40 1 3.0143 -1.7862 -3.3088 41 1 3.7719 -0.2365 -3.7612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592345188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:58 Heat of formation + Delta-G solvation = -143.459905 kcal Electronic energy + Delta-G solvation = -23240.103950 eV Core-core repulsion = 19733.071279 eV Total energy + Delta-G solvation = -3507.032671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81251 -40.94340 -39.10746 -37.26112 -36.02142 -35.42248 -34.36350 -32.10484 -30.49975 -29.43052 -27.59258 -25.44773 -24.52169 -23.34093 -22.41757 -21.50000 -19.68089 -19.14778 -18.91572 -18.52864 -17.51077 -17.04438 -16.71310 -16.55544 -16.21339 -16.03222 -15.79211 -15.30616 -14.91467 -14.83492 -14.47704 -14.36484 -13.93649 -13.73826 -13.58554 -13.22391 -13.03794 -12.88643 -12.53123 -12.36216 -12.35284 -12.34107 -12.20556 -12.07079 -11.91899 -11.83151 -11.58939 -11.40134 -10.80863 -10.76126 -9.79977 -9.04766 -8.26345 -6.29369 1.18709 1.36789 1.37936 1.39203 1.47465 1.83740 2.24153 2.35632 3.06299 3.15413 3.40457 3.56116 3.73738 3.93981 4.01162 4.20227 4.23532 4.24905 4.40886 4.42911 4.46584 4.51941 4.61343 4.74100 4.81379 4.86489 4.91398 4.94505 5.00167 5.06463 5.13532 5.23563 5.42147 5.54200 5.65501 5.93790 6.29028 6.36532 6.61545 6.77272 6.99849 7.05024 7.34532 8.89618 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019786 B = 0.004234 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.812412 B = 6610.830709 C = 7468.637691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.111 0.889 4 C -0.109 4.109 5 C 0.493 3.507 6 O -0.536 6.536 7 O -0.513 6.513 8 C 0.523 3.477 9 O -0.572 6.572 10 N -0.609 5.609 11 C 0.117 3.883 12 C 0.050 3.950 13 N -0.540 5.540 14 C 0.172 3.828 15 C -0.513 4.513 16 H 0.045 0.955 17 C 0.012 3.988 18 N -0.946 5.946 19 Si 0.942 3.058 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.253 1.253 23 C 0.042 3.958 24 C 0.122 3.878 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.430 0.570 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.031 0.969 34 H 0.078 0.922 35 H -0.013 1.013 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.027 0.973 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.059 -4.119 6.256 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 H 0.129 0.871 4 C -0.146 4.146 5 C 0.336 3.664 6 O -0.426 6.426 7 O -0.327 6.327 8 C 0.312 3.688 9 O -0.451 6.451 10 N -0.341 5.341 11 C -0.005 4.005 12 C -0.079 4.079 13 N -0.265 5.265 14 C 0.045 3.955 15 C -0.551 4.551 16 H 0.064 0.936 17 C -0.186 4.186 18 N -0.586 5.586 19 Si 0.766 3.234 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.177 1.177 23 C -0.087 4.087 24 C 0.000 4.000 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.292 0.708 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.005 0.995 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.292 -4.076 5.332 19.485 hybrid contribution 0.867 -0.667 0.831 1.374 sum -17.425 -4.743 6.163 19.082 Atomic orbital electron populations 1.21736 0.91651 1.02706 1.03200 1.21118 0.99066 1.00911 0.90457 0.87095 1.21309 1.04962 1.00746 0.87614 1.23138 0.74954 0.83081 0.85185 1.90717 1.38688 1.25756 1.87471 1.84499 1.74373 1.56645 1.17187 1.20787 0.80311 0.81907 0.85769 1.90659 1.57131 1.34629 1.62727 1.48332 1.15890 1.45629 1.24244 1.22104 0.87879 0.92146 0.98418 1.22432 0.96009 0.99404 0.90012 1.61788 1.02220 1.38307 1.24171 1.19938 0.86144 0.94018 0.95438 1.21228 0.91697 0.95812 1.46395 0.93628 1.25753 0.97408 1.00794 0.94610 1.70034 1.04561 1.33679 1.50372 0.85796 0.78281 0.80495 0.78821 1.19224 1.21009 1.17716 1.22495 0.93015 0.92750 1.00448 1.21683 0.93942 0.98829 0.85584 0.92357 0.92104 0.90296 0.86218 0.85797 0.70766 0.90081 0.87220 0.95110 0.90377 0.99547 0.95270 0.92492 0.95463 0.89177 0.88751 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.61 71.98 0.62 -2.07 16 2 C -0.09 -1.85 1.51 -11.54 -0.02 -1.87 16 3 H 0.11 2.05 6.59 -2.39 -0.02 2.04 16 4 C -0.11 -1.76 4.98 29.85 0.15 -1.62 16 5 C 0.49 8.24 8.01 71.23 0.57 8.81 16 6 O -0.54 -11.62 14.75 21.96 0.32 -11.30 16 7 O -0.51 -6.49 13.42 -51.38 -0.69 -7.18 16 8 C 0.52 13.23 6.80 87.66 0.60 13.83 16 9 O -0.57 -17.92 15.46 -3.04 -0.05 -17.96 16 10 N -0.61 -15.61 3.00 -817.04 -2.45 -18.07 16 11 C 0.12 2.90 6.15 86.50 0.53 3.43 16 12 C 0.05 1.65 5.47 86.54 0.47 2.13 16 13 N -0.54 -20.27 4.62 -898.86 -4.15 -24.42 16 14 C 0.17 7.71 3.79 85.56 0.32 8.04 16 15 C -0.51 -27.95 8.96 25.60 0.23 -27.72 16 16 H 0.05 2.74 7.37 -2.91 -0.02 2.72 16 17 C 0.01 0.67 5.47 84.65 0.46 1.13 16 18 N -0.95 -57.06 13.96 21.45 0.30 -56.77 16 19 Si 0.94 42.47 27.47 68.60 1.88 44.35 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 23 C 0.04 1.27 5.62 86.38 0.49 1.75 16 24 C 0.12 3.27 6.61 86.35 0.57 3.84 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.26 7.69 -2.39 -0.02 1.25 16 27 H 0.08 1.55 5.89 -2.38 -0.01 1.53 16 28 H 0.12 1.82 7.20 -2.39 -0.02 1.80 16 29 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.43 1.87 9.10 -74.06 -0.67 1.19 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.11 2.08 4.95 -2.39 -0.01 2.07 16 33 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 2.98 6.67 -2.39 -0.02 2.96 16 35 H -0.01 -0.60 7.18 -2.38 -0.02 -0.61 16 36 H 0.03 1.30 7.40 -2.39 -0.02 1.28 16 37 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 2.58 7.99 -2.39 -0.02 2.56 16 40 H 0.09 2.49 7.04 -2.39 -0.02 2.47 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.70 327.65 0.48 -70.22 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.32 Total: 11.42 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.00 Total: 9.69 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -6.31 Total: -99.25 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.41 Total: -36.44 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.35 kcal Total: -70.70 0.48 -70.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592345188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.236 kcal (2) G-P(sol) polarization free energy of solvation -70.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds