Wall clock time and date at job start Tue Mar 31 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46664 * 2 1 4 4 C 1.53000 * 109.47460 * 240.00501 * 2 1 3 5 5 C 1.50706 * 109.47165 * 64.99588 * 4 2 1 6 6 O 1.20829 * 119.99782 * 0.02562 * 5 4 2 7 7 O 1.34224 * 119.99884 * 179.72480 * 5 4 2 8 8 C 1.50702 * 109.47251 * 120.00288 * 2 1 3 9 9 O 1.21272 * 119.99985 * 93.88824 * 8 2 1 10 10 N 1.34779 * 119.99709 * 273.89339 * 8 2 1 11 11 C 1.47077 * 120.87658 * 184.90187 * 10 8 2 12 12 C 1.53693 * 108.27723 * 128.75695 * 11 10 8 13 13 N 1.46899 * 109.25958 * 54.07845 * 12 11 10 14 14 C 1.46897 * 110.99947 * 172.61130 * 13 12 11 15 15 C 1.50703 * 109.46904 * 294.29898 * 14 13 12 16 16 H 1.07997 * 120.00094 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99971 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99691 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00260 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46826 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47180 * 120.00128 * 19 17 15 22 22 H 1.48500 * 109.47258 * 240.00015 * 19 17 15 23 23 C 1.46904 * 111.26611 * 296.75696 * 13 12 11 24 24 C 1.47084 * 120.88237 * 5.17931 * 10 8 2 25 25 H 1.09004 * 109.46924 * 179.09028 * 1 2 3 26 26 H 1.08999 * 109.47239 * 299.09536 * 1 2 3 27 27 H 1.09004 * 109.47079 * 59.09765 * 1 2 3 28 28 H 1.09008 * 109.46900 * 304.99972 * 4 2 1 29 29 H 1.08993 * 109.47241 * 185.00222 * 4 2 1 30 30 H 0.96697 * 116.99995 * 180.27224 * 7 5 4 31 31 H 1.09010 * 109.62509 * 248.52086 * 11 10 8 32 32 H 1.08994 * 109.63406 * 9.09684 * 11 10 8 33 33 H 1.09006 * 109.64448 * 294.07427 * 12 11 10 34 34 H 1.09000 * 109.42273 * 173.94617 * 12 11 10 35 35 H 1.08995 * 109.47513 * 54.29902 * 14 13 12 36 36 H 1.08998 * 109.47269 * 174.30216 * 14 13 12 37 37 H 0.97006 * 119.99473 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.49310 * 303.14360 * 23 13 12 39 39 H 1.09003 * 109.48860 * 183.06219 * 23 13 12 40 40 H 1.08997 * 109.62500 * 350.89224 * 24 10 8 41 41 H 1.08995 * 109.62811 * 111.47985 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 8 1.0140 1.0837 -2.3636 7 8 1.9883 -0.3866 -3.6949 8 6 2.0324 -0.7105 1.2304 9 8 2.3016 -1.8919 1.1810 10 7 2.1823 -0.0328 2.3858 11 6 2.7710 -0.6788 3.5687 12 6 3.8991 0.2210 4.0979 13 7 3.3732 1.5735 4.3265 14 6 4.3700 2.4197 4.9959 15 6 4.6298 1.8890 6.3823 16 1 4.1070 1.0107 6.7310 17 6 5.5349 2.5248 7.2055 18 7 6.1711 3.5947 6.7809 19 14 5.8564 1.8674 8.9242 20 1 5.0199 0.6629 9.1579 21 1 7.2909 1.5064 9.0558 22 1 5.5145 2.9099 9.9249 23 6 2.9186 2.1876 3.0718 24 6 1.7559 1.3703 2.4989 25 1 -0.3633 -1.0276 -0.0163 26 1 -0.3634 0.4997 0.8980 27 1 -0.3633 0.5278 -0.8818 28 1 1.6054 -1.7197 -1.2953 29 1 3.1263 -0.7994 -1.2056 30 1 1.7135 0.1486 -4.4519 31 1 2.0071 -0.8030 4.3363 32 1 3.1766 -1.6516 3.2910 33 1 4.7071 0.2636 3.3675 34 1 4.2772 -0.1855 5.0359 35 1 5.2976 2.4105 4.4237 36 1 3.9942 3.4407 5.0623 37 1 6.8076 4.0422 7.3602 38 1 3.7403 2.2028 2.3558 39 1 2.5857 3.2072 3.2657 40 1 1.4901 1.7527 1.5134 41 1 0.8964 1.4392 3.1656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592345189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:02 Heat of formation + Delta-G solvation = -123.328601 kcal Electronic energy + Delta-G solvation = -22950.233528 eV Core-core repulsion = 19444.073816 eV Total energy + Delta-G solvation = -3506.159712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87630 -39.96052 -37.67509 -36.56785 -34.64420 -34.30343 -32.40762 -30.81002 -28.85305 -28.13305 -25.71595 -24.47854 -23.16982 -22.18515 -21.44265 -20.05875 -18.78961 -18.24830 -17.62904 -16.44240 -16.36316 -16.15097 -15.67279 -15.26011 -14.75397 -14.50196 -14.13102 -14.00173 -13.80216 -13.62574 -13.39292 -12.93758 -12.68504 -12.40394 -12.26723 -12.01104 -11.69590 -11.53717 -11.42748 -11.29892 -11.09706 -10.86622 -10.81266 -10.74020 -10.61854 -10.56207 -9.91749 -9.62950 -9.27341 -8.54443 -8.46210 -7.36549 -6.08448 -4.10288 1.89936 2.52467 2.69459 3.19604 3.28011 3.35803 3.40217 4.23806 4.37214 4.51531 4.61023 4.75949 4.95629 5.11442 5.24812 5.27088 5.31366 5.34180 5.36773 5.45747 5.59292 5.62328 5.77049 5.78563 5.89369 5.95894 6.00371 6.17741 6.23650 6.37354 6.49302 6.68272 7.18878 7.24557 7.48672 7.58361 7.72371 7.98114 8.08741 8.17987 8.44729 8.97282 9.54534 11.02407 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034145 B = 0.003289 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.824573 B = 8512.463683 C = 8789.662651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 H 0.104 0.896 4 C -0.097 4.097 5 C 0.482 3.518 6 O -0.513 6.513 7 O -0.517 6.517 8 C 0.520 3.480 9 O -0.550 6.550 10 N -0.604 5.604 11 C 0.115 3.885 12 C 0.051 3.949 13 N -0.536 5.536 14 C 0.193 3.807 15 C -0.509 4.509 16 H 0.065 0.935 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.039 3.961 24 C 0.108 3.892 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.410 0.590 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.025 0.975 34 H 0.097 0.903 35 H -0.009 1.009 36 H 0.032 0.968 37 H 0.261 0.739 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.942 -6.287 -17.050 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 H 0.122 0.878 4 C -0.135 4.135 5 C 0.325 3.675 6 O -0.401 6.401 7 O -0.329 6.329 8 C 0.308 3.692 9 O -0.428 6.428 10 N -0.336 5.336 11 C -0.007 4.007 12 C -0.078 4.078 13 N -0.261 5.261 14 C 0.068 3.932 15 C -0.548 4.548 16 H 0.083 0.917 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.091 4.091 24 C -0.015 4.015 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.269 0.731 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.043 0.957 34 H 0.115 0.885 35 H 0.009 0.991 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.112 -6.767 -16.315 20.352 hybrid contribution 0.873 0.422 -0.027 0.970 sum -9.239 -6.345 -16.342 19.816 Atomic orbital electron populations 1.21903 0.91837 1.02882 1.04047 1.21113 0.98789 1.00989 0.91389 0.87802 1.21155 1.04516 1.00305 0.87556 1.23458 0.75566 0.83751 0.84745 1.90706 1.37639 1.24701 1.87049 1.84546 1.74754 1.56432 1.17139 1.20334 0.77674 0.87015 0.84211 1.90673 1.51747 1.15414 1.84977 1.48219 1.60767 1.13121 1.11505 1.21975 0.96362 0.96542 0.85860 1.22428 0.93949 0.90530 1.00852 1.62089 1.41964 1.02548 1.19472 1.19733 0.87581 0.92379 0.93460 1.21177 1.22686 1.12717 0.98190 0.91724 1.24997 0.95867 0.95006 0.98727 1.69970 1.27462 1.19487 1.36805 0.86438 0.77907 0.78963 0.84101 1.19597 1.21108 1.20990 1.22410 0.96081 0.98300 0.92283 1.22034 0.98129 0.80055 1.01295 0.92131 0.91592 0.89919 0.86439 0.87131 0.73116 0.90849 0.89398 0.95724 0.88457 0.99097 0.95003 0.92920 0.95485 0.89944 0.89777 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.76 37.16 0.33 -1.12 16 2 C -0.10 -1.09 1.52 -91.77 -0.14 -1.23 16 3 H 0.10 1.10 6.21 -51.93 -0.32 0.77 16 4 C -0.10 -0.92 4.74 -27.88 -0.13 -1.05 16 5 C 0.48 4.43 8.05 36.01 0.29 4.72 16 6 O -0.51 -5.88 14.73 -18.75 -0.28 -6.15 16 7 O -0.52 -3.64 13.42 -39.24 -0.53 -4.17 16 8 C 0.52 7.24 6.80 -10.98 -0.07 7.17 16 9 O -0.55 -9.13 15.69 5.56 0.09 -9.04 16 10 N -0.60 -8.75 3.00 -172.18 -0.52 -9.26 16 11 C 0.11 1.82 6.61 -3.37 -0.02 1.80 16 12 C 0.05 0.96 5.47 -3.46 -0.02 0.95 16 13 N -0.54 -10.89 4.62 -235.46 -1.09 -11.98 16 14 C 0.19 4.85 4.72 -4.98 -0.02 4.82 16 15 C -0.51 -13.83 8.41 -34.44 -0.29 -14.12 16 16 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 19 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 24 C 0.11 1.42 6.06 -3.60 -0.02 1.39 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.61 7.55 -51.93 -0.39 0.22 16 27 H 0.08 0.81 5.98 -51.93 -0.31 0.50 16 28 H 0.12 1.06 8.03 -51.92 -0.42 0.64 16 29 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.41 1.15 9.10 45.56 0.41 1.57 16 31 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 32 H 0.09 1.39 7.10 -51.93 -0.37 1.02 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 1.95 6.67 -51.93 -0.35 1.61 16 35 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 36 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 1.31 7.99 -51.93 -0.41 0.89 16 40 H 0.08 0.89 5.27 -51.93 -0.27 0.62 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 332.12 15.07 5.00 5.00 Total: -1.00 -32.79 332.12 -7.14 -39.93 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.31 Total: -0.46 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.23 Total: 5.40 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.87 Total: -46.69 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.72 Total: -19.37 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.79 -7.14 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592345189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.400 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds