Wall clock time and date at job start Tue Mar 31 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46664 * 2 1 4 4 C 1.53000 * 109.47460 * 240.00501 * 2 1 3 5 5 C 1.50706 * 109.47165 * 64.99588 * 4 2 1 6 6 O 1.20829 * 119.99782 * 0.02562 * 5 4 2 7 7 O 1.34224 * 119.99884 * 179.72480 * 5 4 2 8 8 C 1.50702 * 109.47251 * 120.00288 * 2 1 3 9 9 O 1.21272 * 119.99985 * 93.88824 * 8 2 1 10 10 N 1.34779 * 119.99709 * 273.89339 * 8 2 1 11 11 C 1.47077 * 120.87658 * 184.90187 * 10 8 2 12 12 C 1.53693 * 108.27723 * 128.75695 * 11 10 8 13 13 N 1.46899 * 109.25958 * 54.07845 * 12 11 10 14 14 C 1.46897 * 110.99947 * 172.61130 * 13 12 11 15 15 C 1.50703 * 109.46904 * 294.29898 * 14 13 12 16 16 H 1.07997 * 120.00094 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99971 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99691 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00260 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46826 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47180 * 120.00128 * 19 17 15 22 22 H 1.48500 * 109.47258 * 240.00015 * 19 17 15 23 23 C 1.46904 * 111.26611 * 296.75696 * 13 12 11 24 24 C 1.47084 * 120.88237 * 5.17931 * 10 8 2 25 25 H 1.09004 * 109.46924 * 179.09028 * 1 2 3 26 26 H 1.08999 * 109.47239 * 299.09536 * 1 2 3 27 27 H 1.09004 * 109.47079 * 59.09765 * 1 2 3 28 28 H 1.09008 * 109.46900 * 304.99972 * 4 2 1 29 29 H 1.08993 * 109.47241 * 185.00222 * 4 2 1 30 30 H 0.96697 * 116.99995 * 180.27224 * 7 5 4 31 31 H 1.09010 * 109.62509 * 248.52086 * 11 10 8 32 32 H 1.08994 * 109.63406 * 9.09684 * 11 10 8 33 33 H 1.09006 * 109.64448 * 294.07427 * 12 11 10 34 34 H 1.09000 * 109.42273 * 173.94617 * 12 11 10 35 35 H 1.08995 * 109.47513 * 54.29902 * 14 13 12 36 36 H 1.08998 * 109.47269 * 174.30216 * 14 13 12 37 37 H 0.97006 * 119.99473 * 179.97438 * 18 17 15 38 38 H 1.08999 * 109.49310 * 303.14360 * 23 13 12 39 39 H 1.09003 * 109.48860 * 183.06219 * 23 13 12 40 40 H 1.08997 * 109.62500 * 350.89224 * 24 10 8 41 41 H 1.08995 * 109.62811 * 111.47985 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 8 1.0140 1.0837 -2.3636 7 8 1.9883 -0.3866 -3.6949 8 6 2.0324 -0.7105 1.2304 9 8 2.3016 -1.8919 1.1810 10 7 2.1823 -0.0328 2.3858 11 6 2.7710 -0.6788 3.5687 12 6 3.8991 0.2210 4.0979 13 7 3.3732 1.5735 4.3265 14 6 4.3700 2.4197 4.9959 15 6 4.6298 1.8890 6.3823 16 1 4.1070 1.0107 6.7310 17 6 5.5349 2.5248 7.2055 18 7 6.1711 3.5947 6.7809 19 14 5.8564 1.8674 8.9242 20 1 5.0199 0.6629 9.1579 21 1 7.2909 1.5064 9.0558 22 1 5.5145 2.9099 9.9249 23 6 2.9186 2.1876 3.0718 24 6 1.7559 1.3703 2.4989 25 1 -0.3633 -1.0276 -0.0163 26 1 -0.3634 0.4997 0.8980 27 1 -0.3633 0.5278 -0.8818 28 1 1.6054 -1.7197 -1.2953 29 1 3.1263 -0.7994 -1.2056 30 1 1.7135 0.1486 -4.4519 31 1 2.0071 -0.8030 4.3363 32 1 3.1766 -1.6516 3.2910 33 1 4.7071 0.2636 3.3675 34 1 4.2772 -0.1855 5.0359 35 1 5.2976 2.4105 4.4237 36 1 3.9942 3.4407 5.0623 37 1 6.8076 4.0422 7.3602 38 1 3.7403 2.2028 2.3558 39 1 2.5857 3.2072 3.2657 40 1 1.4901 1.7527 1.5134 41 1 0.8964 1.4392 3.1656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592345189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:02 Heat of formation + Delta-G solvation = -147.268978 kcal Electronic energy + Delta-G solvation = -22951.271661 eV Core-core repulsion = 19444.073816 eV Total energy + Delta-G solvation = -3507.197845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76391 -40.94841 -39.06944 -37.24764 -36.02568 -35.37462 -34.34674 -32.11769 -30.18108 -29.29238 -27.35806 -25.61105 -24.41268 -23.78800 -22.55806 -21.28533 -19.77534 -19.15502 -18.55789 -18.48093 -17.23288 -17.07937 -16.72165 -16.64334 -16.31589 -15.99191 -15.50724 -15.29806 -15.02055 -14.83623 -14.49463 -14.11408 -13.89586 -13.58607 -13.48614 -13.22689 -13.05697 -12.75273 -12.60899 -12.44744 -12.40734 -12.34372 -12.31456 -12.16142 -12.00111 -11.73179 -11.54246 -11.30881 -10.72850 -10.61953 -9.78518 -9.05977 -8.21248 -6.30929 1.20221 1.41666 1.42740 1.50047 1.55812 1.77520 2.28217 2.40475 3.11305 3.22049 3.37187 3.59603 3.85005 3.94970 4.03958 4.18831 4.22860 4.28743 4.43156 4.47220 4.56018 4.61734 4.63023 4.73439 4.84744 4.88781 4.93906 4.97524 5.02157 5.17192 5.22754 5.24700 5.43675 5.64021 5.66357 6.02882 6.20337 6.39777 6.58173 6.85047 7.01269 7.05625 7.39033 8.90061 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034145 B = 0.003289 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.824573 B = 8512.463683 C = 8789.662651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.109 0.891 4 C -0.098 4.098 5 C 0.492 3.508 6 O -0.537 6.537 7 O -0.514 6.514 8 C 0.522 3.478 9 O -0.577 6.577 10 N -0.609 5.609 11 C 0.126 3.874 12 C 0.057 3.943 13 N -0.539 5.539 14 C 0.208 3.792 15 C -0.522 4.522 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.279 1.279 23 C 0.035 3.965 24 C 0.118 3.882 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.429 0.571 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.012 0.988 34 H 0.079 0.921 35 H -0.041 1.041 36 H 0.010 0.990 37 H 0.264 0.736 38 H 0.021 0.979 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.243 -7.006 -17.690 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.127 0.873 4 C -0.136 4.136 5 C 0.336 3.664 6 O -0.427 6.427 7 O -0.328 6.328 8 C 0.311 3.689 9 O -0.457 6.457 10 N -0.341 5.341 11 C 0.004 3.996 12 C -0.072 4.072 13 N -0.264 5.264 14 C 0.082 3.918 15 C -0.560 4.560 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.205 1.205 23 C -0.094 4.094 24 C -0.004 4.004 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.292 0.708 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.030 0.970 34 H 0.097 0.903 35 H -0.023 1.023 36 H 0.028 0.972 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.106 0.894 40 H 0.134 0.866 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.436 -7.493 -16.999 21.815 hybrid contribution 1.295 0.638 0.066 1.445 sum -10.140 -6.856 -16.932 20.893 Atomic orbital electron populations 1.21873 0.90711 1.03111 1.04422 1.21096 0.99544 1.00797 0.90196 0.87277 1.21127 1.04652 1.00448 0.87370 1.23242 0.74912 0.83082 0.85197 1.90704 1.38869 1.25687 1.87475 1.84497 1.74334 1.56696 1.17228 1.20856 0.76753 0.86722 0.84573 1.90662 1.52862 1.16798 1.85359 1.48293 1.60789 1.13641 1.11356 1.21734 0.95442 0.95755 0.86708 1.22355 0.94918 0.90185 0.99780 1.62005 1.39997 1.02677 1.21741 1.19378 0.87235 0.92107 0.93085 1.21495 1.22679 1.12692 0.99159 0.91631 1.25897 0.95598 0.95180 1.02952 1.70091 1.28178 1.20806 1.38442 0.85350 0.77860 0.78596 0.78917 1.18565 1.20688 1.20460 1.22554 0.97141 0.99249 0.90452 1.22070 0.96541 0.78744 1.03073 0.92016 0.90974 0.89740 0.85974 0.86974 0.70844 0.90176 0.89246 0.96977 0.90265 1.02311 0.97164 0.92718 0.96070 0.89380 0.86553 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.76 71.98 0.63 -1.78 16 2 C -0.10 -1.83 1.52 -11.54 -0.02 -1.85 16 3 H 0.11 2.01 6.21 -2.39 -0.01 1.99 16 4 C -0.10 -1.66 4.74 29.85 0.14 -1.52 16 5 C 0.49 7.99 8.05 71.24 0.57 8.56 16 6 O -0.54 -11.16 14.73 21.96 0.32 -10.84 16 7 O -0.51 -6.01 13.42 -51.36 -0.69 -6.70 16 8 C 0.52 13.59 6.80 87.66 0.60 14.18 16 9 O -0.58 -18.38 15.69 -3.01 -0.05 -18.43 16 10 N -0.61 -16.62 3.00 -817.05 -2.45 -19.07 16 11 C 0.13 3.91 6.61 86.50 0.57 4.48 16 12 C 0.06 2.15 5.47 86.54 0.47 2.63 16 13 N -0.54 -22.14 4.62 -898.87 -4.15 -26.29 16 14 C 0.21 10.79 4.72 85.56 0.40 11.19 16 15 C -0.52 -28.85 8.41 25.60 0.22 -28.64 16 16 H 0.07 3.54 7.13 -2.91 -0.02 3.52 16 17 C 0.00 0.10 5.46 84.65 0.46 0.56 16 18 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 19 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 C 0.03 1.13 5.62 86.38 0.49 1.62 16 24 C 0.12 2.84 6.06 86.35 0.52 3.36 16 25 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.07 1.12 7.55 -2.39 -0.02 1.10 16 27 H 0.08 1.44 5.98 -2.38 -0.01 1.43 16 28 H 0.12 1.97 8.03 -2.38 -0.02 1.95 16 29 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.43 1.33 9.10 -74.06 -0.67 0.66 16 31 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.09 2.76 7.10 -2.39 -0.02 2.75 16 33 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 34 H 0.08 3.26 6.67 -2.39 -0.02 3.25 16 35 H -0.04 -2.33 8.12 -2.39 -0.02 -2.35 16 36 H 0.01 0.57 7.97 -2.39 -0.02 0.55 16 37 H 0.26 14.75 8.31 -92.70 -0.77 13.97 16 38 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 2.74 7.99 -2.39 -0.02 2.72 16 40 H 0.12 2.10 5.27 -2.39 -0.01 2.09 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -70.73 332.12 0.72 -70.01 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.37 Total: 8.12 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 5.06 Total: 12.80 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -6.32 Total: -100.63 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.41 Total: -35.97 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -70.73 0.72 -70.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592345189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.260 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds