Wall clock time and date at job start Tue Mar 31 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47201 * 2 1 4 4 C 1.53001 * 109.47279 * 240.00203 * 2 1 3 5 5 C 1.50707 * 109.47256 * 65.00135 * 4 2 1 6 6 O 1.20818 * 119.99681 * 359.97438 * 5 4 2 7 7 O 1.34223 * 120.00147 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47346 * 119.99954 * 2 1 3 9 9 C 1.50694 * 109.47230 * 295.00251 * 8 2 1 10 10 O 1.21284 * 119.99884 * 359.97438 * 9 8 2 11 11 N 1.34775 * 120.00363 * 179.97438 * 9 8 2 12 12 C 1.46957 * 120.59559 * 179.97438 * 11 9 8 13 13 C 1.53378 * 108.63600 * 235.20737 * 12 11 9 14 14 N 1.46960 * 108.63441 * 310.57541 * 13 12 11 15 15 C 1.36929 * 120.59772 * 235.19929 * 14 13 12 16 16 H 1.08001 * 120.00154 * 26.80307 * 15 14 13 17 17 C 1.38818 * 120.00276 * 206.52209 * 15 14 13 18 18 N 1.31616 * 120.00013 * 217.35632 * 17 15 14 19 19 Si 1.86795 * 119.99797 * 37.35637 * 17 15 14 20 20 H 1.48497 * 109.47307 * 95.28345 * 19 17 15 21 21 H 1.48499 * 109.46918 * 215.28171 * 19 17 15 22 22 H 1.48500 * 109.47058 * 335.28197 * 19 17 15 23 23 C 1.46972 * 118.81093 * 55.48291 * 14 13 12 24 24 C 1.46973 * 120.59035 * 359.97438 * 11 9 8 25 25 H 1.08996 * 109.47417 * 299.99758 * 1 2 3 26 26 H 1.09003 * 109.47070 * 59.99837 * 1 2 3 27 27 H 1.09001 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47222 * 185.00013 * 4 2 1 29 29 H 1.08997 * 109.47401 * 304.99762 * 4 2 1 30 30 H 0.96693 * 117.00144 * 179.97438 * 7 5 4 31 31 H 1.09000 * 109.47306 * 174.99813 * 8 2 1 32 32 H 1.09000 * 109.46937 * 55.00286 * 8 2 1 33 33 H 1.09004 * 109.60829 * 115.46529 * 12 11 9 34 34 H 1.08995 * 109.61517 * 354.95708 * 12 11 9 35 35 H 1.09001 * 109.60979 * 190.83526 * 13 12 11 36 36 H 1.08997 * 109.60544 * 70.32236 * 13 12 11 37 37 H 0.97000 * 120.00046 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.61298 * 64.25873 * 23 14 13 39 39 H 1.08995 * 109.61261 * 184.77395 * 23 14 13 40 40 H 1.08994 * 109.60538 * 244.53503 * 24 11 9 41 41 H 1.09004 * 109.60748 * 4.87617 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4767 6 8 1.0134 1.0831 -2.3637 7 8 1.9831 -0.3899 -3.6952 8 6 2.0401 -0.7212 1.2492 9 6 1.6414 0.0570 2.4766 10 8 1.0117 1.0873 2.3633 11 7 1.9845 -0.3919 3.7002 12 6 1.6030 0.3569 4.9057 13 6 2.8686 0.6523 5.7202 14 7 3.6306 -0.5951 5.8728 15 6 3.9794 -1.0512 7.1159 16 1 3.3792 -0.7900 7.9749 17 6 5.1012 -1.8540 7.2712 18 7 5.0871 -2.8437 8.1388 19 14 6.6305 -1.5299 6.2488 20 1 7.5735 -0.6836 7.0232 21 1 7.2844 -2.8203 5.9135 22 1 6.2493 -0.8281 4.9968 23 6 4.0171 -1.3410 4.6668 24 6 2.7469 -1.6391 3.8526 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7994 -1.2056 29 1 1.6055 -1.7198 -1.2952 30 1 1.7048 0.1432 -4.4524 31 1 3.1264 -0.7995 1.2056 32 1 1.6055 -1.7198 1.2951 33 1 0.9139 -0.2394 5.5039 34 1 1.1257 1.2938 4.6188 35 1 2.5906 1.0335 6.7028 36 1 3.4762 1.3906 5.1970 37 1 5.8710 -3.4045 8.2475 38 1 4.7047 -0.7413 4.0703 39 1 4.4978 -2.2763 4.9534 40 1 2.1394 -2.3776 4.3757 41 1 3.0225 -2.0219 2.8699 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592375141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:34 Heat of formation + Delta-G solvation = -124.841268 kcal Electronic energy + Delta-G solvation = -23068.364256 eV Core-core repulsion = 19562.138950 eV Total energy + Delta-G solvation = -3506.225306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.47729 -40.95658 -38.72788 -37.30362 -36.17281 -35.57554 -33.57121 -32.29162 -30.12810 -29.04844 -28.13850 -25.29866 -24.71484 -23.61359 -22.23848 -20.90471 -20.02782 -18.98021 -18.74716 -17.87979 -17.55550 -16.97198 -16.92716 -16.54908 -16.42094 -15.98149 -15.45438 -15.27153 -14.82019 -14.67026 -14.32097 -14.18824 -14.04226 -13.73091 -13.43018 -13.21810 -12.87627 -12.75980 -12.59773 -12.45035 -12.23741 -12.12907 -12.03901 -11.97672 -11.83248 -11.68552 -11.40012 -11.31542 -10.66452 -10.60105 -9.79928 -8.85466 -8.22204 -5.37991 1.30507 1.37343 1.50225 1.56153 1.71904 1.98781 2.31912 2.46295 2.95398 3.40538 3.52270 3.90471 3.94598 4.00644 4.16127 4.22805 4.38051 4.48196 4.49736 4.55793 4.63482 4.69039 4.70816 4.73994 4.76999 4.81764 4.90474 4.96453 5.03132 5.17971 5.21656 5.37196 5.49463 5.58304 5.75326 5.86691 6.11735 6.55938 6.91546 7.07730 7.26571 7.63724 8.06135 8.95901 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.003775 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.045417 B = 7416.416140 C = 8056.436752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.060 4.060 3 H 0.056 0.944 4 C -0.106 4.106 5 C 0.479 3.521 6 O -0.553 6.553 7 O -0.515 6.515 8 C -0.131 4.131 9 C 0.506 3.494 10 O -0.584 6.584 11 N -0.606 5.606 12 C 0.105 3.895 13 C 0.133 3.867 14 N -0.614 5.614 15 C -0.268 4.268 16 H 0.047 0.953 17 C -0.010 4.010 18 N -0.927 5.927 19 Si 0.901 3.099 20 H -0.307 1.307 21 H -0.290 1.290 22 H -0.234 1.234 23 C 0.123 3.877 24 C 0.096 3.904 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.424 0.576 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.264 0.736 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.902 -0.280 -22.378 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.079 4.079 3 H 0.075 0.925 4 C -0.143 4.143 5 C 0.323 3.677 6 O -0.444 6.444 7 O -0.329 6.329 8 C -0.170 4.170 9 C 0.297 3.703 10 O -0.464 6.464 11 N -0.338 5.338 12 C -0.020 4.020 13 C 0.007 3.993 14 N -0.338 5.338 15 C -0.397 4.397 16 H 0.065 0.935 17 C -0.208 4.208 18 N -0.569 5.569 19 Si 0.728 3.272 20 H -0.236 1.236 21 H -0.217 1.217 22 H -0.157 1.157 23 C -0.003 4.003 24 C -0.027 4.027 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.286 0.714 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.211 0.160 -21.992 22.601 hybrid contribution 0.695 0.743 0.074 1.020 sum -4.516 0.903 -21.918 22.397 Atomic orbital electron populations 1.22000 0.95290 1.01875 1.02065 1.20594 0.96427 0.99011 0.91914 0.92525 1.21527 1.05707 1.00491 0.86604 1.23914 0.74731 0.83341 0.85672 1.90731 1.39293 1.26763 1.87580 1.84505 1.74473 1.56612 1.17261 1.21821 1.04725 1.00751 0.89700 1.21338 0.78400 0.85401 0.85161 1.90641 1.42455 1.26696 1.86653 1.48150 1.54722 1.25169 1.05793 1.21923 0.97101 0.97043 0.85915 1.21395 0.91730 0.87506 0.98644 1.44421 1.63988 1.23195 1.02186 1.18684 1.06883 1.27800 0.86342 0.93511 1.25701 1.00409 0.96335 0.98374 1.70200 1.29933 1.15712 1.41100 0.86561 0.82024 0.77661 0.80987 1.23617 1.21667 1.15727 1.21890 0.95186 0.95795 0.87413 1.22494 0.92904 0.84969 1.02382 0.93439 0.92962 0.91490 0.84771 0.84499 0.71424 0.85954 0.85465 0.91962 0.89594 0.91284 0.95464 0.92729 0.94316 0.91831 0.91383 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 8.68 71.98 0.62 -2.89 16 2 C -0.06 -1.15 1.68 -10.79 -0.02 -1.16 16 3 H 0.06 1.45 7.77 -2.39 -0.02 1.43 16 4 C -0.11 -1.20 5.29 29.85 0.16 -1.04 16 5 C 0.48 7.82 8.05 71.24 0.57 8.39 16 6 O -0.55 -13.88 14.72 21.99 0.32 -13.56 16 7 O -0.51 -5.63 13.42 -51.35 -0.69 -6.32 16 8 C -0.13 -2.23 3.52 29.85 0.10 -2.12 16 9 C 0.51 14.24 7.41 87.66 0.65 14.89 16 10 O -0.58 -20.84 13.37 -3.04 -0.04 -20.88 16 11 N -0.61 -18.18 2.95 -817.19 -2.41 -20.59 16 12 C 0.10 3.51 6.59 86.42 0.57 4.08 16 13 C 0.13 5.09 6.67 86.42 0.58 5.67 16 14 N -0.61 -27.19 2.71 -697.38 -1.89 -29.08 16 15 C -0.27 -14.44 9.84 84.04 0.83 -13.61 16 16 H 0.05 2.78 8.05 -2.91 -0.02 2.76 16 17 C -0.01 -0.55 4.80 84.86 0.41 -0.14 16 18 N -0.93 -54.83 13.97 21.65 0.30 -54.53 16 19 Si 0.90 41.69 26.46 68.60 1.82 43.50 16 20 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.23 -9.77 4.99 99.48 0.50 -9.28 16 23 C 0.12 4.54 4.58 86.56 0.40 4.94 16 24 C 0.10 2.66 6.52 86.56 0.56 3.22 16 25 H 0.05 1.38 5.95 -2.39 -0.01 1.36 16 26 H 0.05 1.32 5.96 -2.39 -0.01 1.31 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.42 1.60 9.10 -74.06 -0.67 0.93 16 31 H 0.12 1.51 7.72 -2.39 -0.02 1.49 16 32 H 0.13 1.44 7.91 -2.39 -0.02 1.42 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 2.87 6.99 -2.39 -0.02 2.86 16 35 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 36 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 38 H 0.04 1.40 6.78 -2.39 -0.02 1.38 16 39 H 0.06 2.54 5.59 -2.39 -0.01 2.53 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 41 H 0.13 2.21 5.91 -2.39 -0.01 2.20 16 Total: -1.00 -76.08 323.28 3.01 -73.06 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.16 Total: 8.17 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 5.43 Total: 20.22 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -3.99 Total: -104.20 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.41 Total: -40.76 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.82 Total: 43.50 kcal Total: -76.08 3.01 -73.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592375141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.776 kcal (2) G-P(sol) polarization free energy of solvation -76.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds