Wall clock time and date at job start Tue Mar 31 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47169 * 2 1 4 4 C 1.53000 * 109.47101 * 120.00234 * 2 1 3 5 5 C 1.50697 * 109.46901 * 295.00010 * 4 2 1 6 6 O 1.20824 * 120.00466 * 359.97438 * 5 4 2 7 7 O 1.34228 * 119.99571 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.47118 * 240.00203 * 2 1 3 9 9 C 1.50705 * 109.46715 * 64.99909 * 8 2 1 10 10 O 1.21277 * 120.00290 * 0.02562 * 9 8 2 11 11 N 1.34777 * 119.99248 * 179.97438 * 9 8 2 12 12 C 1.46967 * 120.58817 * 179.97438 * 11 9 8 13 13 C 1.53372 * 108.63851 * 235.25278 * 12 11 9 14 14 N 1.46972 * 108.63294 * 310.58124 * 13 12 11 15 15 C 1.36935 * 120.59045 * 235.20034 * 14 13 12 16 16 H 1.08002 * 119.99725 * 151.84492 * 15 14 13 17 17 C 1.38804 * 120.00405 * 331.57419 * 15 14 13 18 18 N 1.31622 * 119.99787 * 342.82520 * 17 15 14 19 19 Si 1.86800 * 120.00346 * 162.82771 * 17 15 14 20 20 H 1.48493 * 109.47374 * 89.99790 * 19 17 15 21 21 H 1.48498 * 109.46972 * 210.00173 * 19 17 15 22 22 H 1.48504 * 109.47003 * 329.99893 * 19 17 15 23 23 C 1.46962 * 118.81330 * 55.47395 * 14 13 12 24 24 C 1.46958 * 120.59751 * 0.02866 * 11 9 8 25 25 H 1.09007 * 109.46915 * 59.99879 * 1 2 3 26 26 H 1.08990 * 109.47116 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46982 * 299.99831 * 1 2 3 28 28 H 1.08994 * 109.46849 * 55.00208 * 4 2 1 29 29 H 1.08995 * 109.46779 * 175.00024 * 4 2 1 30 30 H 0.96708 * 117.00008 * 179.97438 * 7 5 4 31 31 H 1.08996 * 109.47072 * 305.00492 * 8 2 1 32 32 H 1.09002 * 109.46903 * 184.99665 * 8 2 1 33 33 H 1.09005 * 109.60801 * 115.51253 * 12 11 9 34 34 H 1.08997 * 109.61513 * 355.00061 * 12 11 9 35 35 H 1.08999 * 109.60965 * 190.83666 * 13 12 11 36 36 H 1.08997 * 109.61140 * 70.31700 * 13 12 11 37 37 H 0.97004 * 120.00040 * 180.02562 * 18 17 15 38 38 H 1.09006 * 109.60789 * 64.26734 * 23 14 13 39 39 H 1.09004 * 109.61164 * 184.77608 * 23 14 13 40 40 H 1.09002 * 109.60988 * 244.49250 * 24 11 9 41 41 H 1.08997 * 109.61129 * 4.83140 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 8 1.0141 1.0835 2.3637 7 8 1.9839 -0.3897 3.6950 8 6 2.0400 -0.7212 -1.2493 9 6 1.6413 0.0572 -2.4766 10 8 1.0117 1.0875 -2.3632 11 7 1.9853 -0.3912 -3.7001 12 6 1.6028 0.3571 -4.9058 13 6 0.8284 -0.5810 -5.8399 14 7 1.5922 -1.8274 -5.9923 15 6 1.9408 -2.2834 -7.2356 16 1 2.8291 -2.8850 -7.3606 17 6 1.1496 -1.9773 -8.3342 18 7 -0.0843 -1.5542 -8.1591 19 14 1.8361 -2.1660 -10.0613 20 1 1.5592 -3.5381 -10.5568 21 1 1.1921 -1.1754 -10.9608 22 1 3.3028 -1.9343 -10.0390 23 6 1.9698 -2.5786 -4.7870 24 6 2.7485 -1.6378 -3.8526 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -1.7198 1.2950 29 1 3.1263 -0.7995 1.2055 30 1 1.7061 0.1437 4.4523 31 1 1.6054 -1.7197 -1.2953 32 1 3.1264 -0.7994 -1.2056 33 1 2.4983 0.7191 -5.4111 34 1 0.9705 1.2003 -4.6278 35 1 0.7039 -0.1068 -6.8134 36 1 -0.1485 -0.8011 -5.4096 37 1 -0.6374 -1.3406 -8.9269 38 1 1.0721 -2.9376 -4.2835 39 1 2.5991 -3.4241 -5.0650 40 1 3.7257 -1.4182 -4.2827 41 1 2.8755 -2.1105 -2.8787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592375142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:38 Heat of formation + Delta-G solvation = -108.752870 kcal Electronic energy + Delta-G solvation = -22974.527356 eV Core-core repulsion = 19468.999695 eV Total energy + Delta-G solvation = -3505.527661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.62224 -39.68794 -37.13071 -36.48286 -35.19121 -33.90485 -31.20352 -30.66267 -29.01961 -27.77585 -26.55542 -23.73515 -23.09704 -22.42634 -20.74524 -19.84032 -18.64219 -18.15877 -17.28481 -16.69333 -16.25949 -16.10250 -15.45161 -15.08895 -14.80747 -14.36068 -13.82037 -13.66518 -13.51994 -13.32501 -13.17330 -12.81964 -12.60521 -12.37027 -11.96498 -11.87099 -11.68980 -11.28842 -11.16556 -11.04491 -10.84903 -10.79801 -10.70520 -10.59046 -10.47124 -10.26285 -9.97246 -9.85261 -9.25831 -8.60368 -8.21851 -6.72681 -5.86496 -3.32020 2.00279 2.77631 3.01072 3.32946 3.40472 3.41966 3.50138 4.41798 4.47872 4.72283 4.78457 4.94557 5.18179 5.22066 5.28720 5.31277 5.38445 5.49201 5.69118 5.72212 5.75508 5.81115 5.87175 6.08006 6.15532 6.28158 6.32692 6.36953 6.37918 6.49580 6.60432 6.68343 6.87587 7.25784 7.53801 7.67735 7.70592 7.93777 8.34655 8.60643 9.10279 9.73172 10.29844 11.20855 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.047848 B = 0.003188 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.048330 B = 8780.097635 C = 9036.209305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.064 4.064 3 H 0.087 0.913 4 C -0.111 4.111 5 C 0.477 3.523 6 O -0.506 6.506 7 O -0.522 6.522 8 C -0.136 4.136 9 C 0.509 3.491 10 O -0.550 6.550 11 N -0.598 5.598 12 C 0.087 3.913 13 C 0.159 3.841 14 N -0.591 5.591 15 C -0.259 4.259 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.900 5.900 19 Si 0.904 3.096 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.130 3.870 24 C 0.088 3.912 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.408 0.592 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.023 0.977 37 H 0.256 0.744 38 H 0.023 0.977 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 -0.584 18.549 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.083 4.083 3 H 0.106 0.894 4 C -0.149 4.149 5 C 0.319 3.681 6 O -0.393 6.393 7 O -0.334 6.334 8 C -0.176 4.176 9 C 0.297 3.703 10 O -0.429 6.429 11 N -0.330 5.330 12 C -0.037 4.037 13 C 0.033 3.967 14 N -0.314 5.314 15 C -0.388 4.388 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.544 5.544 19 Si 0.733 3.267 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.003 3.997 24 C -0.037 4.037 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.267 0.733 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.684 0.040 18.061 18.935 hybrid contribution 0.143 0.072 -0.459 0.486 sum 5.828 0.112 17.602 18.542 Atomic orbital electron populations 1.22083 0.93907 1.01317 1.04432 1.20717 0.97665 0.99938 0.89939 0.89417 1.21511 1.03858 1.00237 0.89258 1.23569 0.75853 0.84062 0.84628 1.90736 1.37026 1.24669 1.86913 1.84547 1.75017 1.56611 1.17268 1.21722 1.02500 1.00456 0.92883 1.20443 0.79726 0.85696 0.84480 1.90635 1.40917 1.25154 1.86211 1.48092 1.54398 1.24588 1.05971 1.22489 1.00043 0.95988 0.85139 1.21185 0.91405 0.85861 0.98291 1.44016 1.64649 1.21694 1.01068 1.19168 1.04622 1.31384 0.83625 0.91505 1.25094 0.94639 1.01152 0.98633 1.70023 1.05955 1.48791 1.29637 0.86282 0.78541 0.77519 0.84315 1.21334 1.21479 1.20415 1.21359 0.96513 0.93140 0.88692 1.22454 0.95490 0.85519 1.00190 0.90104 0.93691 0.91634 0.87467 0.87580 0.73336 0.88727 0.89043 0.92309 0.90148 0.88316 0.95925 0.93426 0.95901 0.91520 0.91634 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.68 37.16 0.32 -1.82 16 2 C -0.06 -0.73 1.68 -90.62 -0.15 -0.88 16 3 H 0.09 1.20 7.77 -51.93 -0.40 0.80 16 4 C -0.11 -0.89 5.29 -27.88 -0.15 -1.04 16 5 C 0.48 4.62 8.05 36.00 0.29 4.91 16 6 O -0.51 -6.74 14.73 -18.75 -0.28 -7.02 16 7 O -0.52 -3.72 13.42 -39.25 -0.53 -4.25 16 8 C -0.14 -1.54 3.52 -27.88 -0.10 -1.64 16 9 C 0.51 8.42 7.41 -10.98 -0.08 8.34 16 10 O -0.55 -10.91 13.37 5.56 0.07 -10.84 16 11 N -0.60 -10.49 2.95 -172.24 -0.51 -11.00 16 12 C 0.09 1.74 6.59 -3.60 -0.02 1.72 16 13 C 0.16 3.76 5.51 -3.59 -0.02 3.74 16 14 N -0.59 -14.22 2.96 -171.78 -0.51 -14.72 16 15 C -0.26 -6.80 9.57 -15.06 -0.14 -6.95 16 16 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 17 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 18 N -0.90 -25.62 11.20 55.49 0.62 -25.00 16 19 Si 0.90 21.06 29.59 -169.99 -5.03 16.04 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.13 2.49 6.70 -3.39 -0.02 2.47 16 24 C 0.09 1.36 6.52 -3.39 -0.02 1.33 16 25 H 0.08 1.33 5.95 -51.93 -0.31 1.02 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.91 5.96 -51.93 -0.31 0.60 16 28 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.41 1.33 9.10 45.56 0.41 1.74 16 31 H 0.09 0.94 7.72 -51.93 -0.40 0.54 16 32 H 0.09 0.81 7.91 -51.93 -0.41 0.40 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.63 6.99 -51.93 -0.36 1.27 16 35 H 0.10 2.59 6.00 -51.93 -0.31 2.28 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.83 5.91 -51.93 -0.31 0.52 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -33.57 328.40 -6.71 -40.28 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.32 Total: 1.37 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -0.19 Total: 10.19 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.39 Total: -50.72 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.73 Total: -22.10 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.57 -6.71 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592375142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.471 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds