Wall clock time and date at job start Tue Mar 31 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47169 * 2 1 4 4 C 1.53000 * 109.47101 * 120.00234 * 2 1 3 5 5 C 1.50697 * 109.46901 * 295.00010 * 4 2 1 6 6 O 1.20824 * 120.00466 * 359.97438 * 5 4 2 7 7 O 1.34228 * 119.99571 * 180.02562 * 5 4 2 8 8 C 1.53005 * 109.47118 * 240.00203 * 2 1 3 9 9 C 1.50705 * 109.46715 * 64.99909 * 8 2 1 10 10 O 1.21277 * 120.00290 * 0.02562 * 9 8 2 11 11 N 1.34777 * 119.99248 * 179.97438 * 9 8 2 12 12 C 1.46967 * 120.58817 * 179.97438 * 11 9 8 13 13 C 1.53372 * 108.63851 * 235.25278 * 12 11 9 14 14 N 1.46972 * 108.63294 * 310.58124 * 13 12 11 15 15 C 1.36935 * 120.59045 * 235.20034 * 14 13 12 16 16 H 1.08002 * 119.99725 * 151.84492 * 15 14 13 17 17 C 1.38804 * 120.00405 * 331.57419 * 15 14 13 18 18 N 1.31622 * 119.99787 * 342.82520 * 17 15 14 19 19 Si 1.86800 * 120.00346 * 162.82771 * 17 15 14 20 20 H 1.48493 * 109.47374 * 89.99790 * 19 17 15 21 21 H 1.48498 * 109.46972 * 210.00173 * 19 17 15 22 22 H 1.48504 * 109.47003 * 329.99893 * 19 17 15 23 23 C 1.46962 * 118.81330 * 55.47395 * 14 13 12 24 24 C 1.46958 * 120.59751 * 0.02866 * 11 9 8 25 25 H 1.09007 * 109.46915 * 59.99879 * 1 2 3 26 26 H 1.08990 * 109.47116 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46982 * 299.99831 * 1 2 3 28 28 H 1.08994 * 109.46849 * 55.00208 * 4 2 1 29 29 H 1.08995 * 109.46779 * 175.00024 * 4 2 1 30 30 H 0.96708 * 117.00008 * 179.97438 * 7 5 4 31 31 H 1.08996 * 109.47072 * 305.00492 * 8 2 1 32 32 H 1.09002 * 109.46903 * 184.99665 * 8 2 1 33 33 H 1.09005 * 109.60801 * 115.51253 * 12 11 9 34 34 H 1.08997 * 109.61513 * 355.00061 * 12 11 9 35 35 H 1.08999 * 109.60965 * 190.83666 * 13 12 11 36 36 H 1.08997 * 109.61140 * 70.31700 * 13 12 11 37 37 H 0.97004 * 120.00040 * 180.02562 * 18 17 15 38 38 H 1.09006 * 109.60789 * 64.26734 * 23 14 13 39 39 H 1.09004 * 109.61164 * 184.77608 * 23 14 13 40 40 H 1.09002 * 109.60988 * 244.49250 * 24 11 9 41 41 H 1.08997 * 109.61129 * 4.83140 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4765 6 8 1.0141 1.0835 2.3637 7 8 1.9839 -0.3897 3.6950 8 6 2.0400 -0.7212 -1.2493 9 6 1.6413 0.0572 -2.4766 10 8 1.0117 1.0875 -2.3632 11 7 1.9853 -0.3912 -3.7001 12 6 1.6028 0.3571 -4.9058 13 6 0.8284 -0.5810 -5.8399 14 7 1.5922 -1.8274 -5.9923 15 6 1.9408 -2.2834 -7.2356 16 1 2.8291 -2.8850 -7.3606 17 6 1.1496 -1.9773 -8.3342 18 7 -0.0843 -1.5542 -8.1591 19 14 1.8361 -2.1660 -10.0613 20 1 1.5592 -3.5381 -10.5568 21 1 1.1921 -1.1754 -10.9608 22 1 3.3028 -1.9343 -10.0390 23 6 1.9698 -2.5786 -4.7870 24 6 2.7485 -1.6378 -3.8526 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -1.7198 1.2950 29 1 3.1263 -0.7995 1.2055 30 1 1.7061 0.1437 4.4523 31 1 1.6054 -1.7197 -1.2953 32 1 3.1264 -0.7994 -1.2056 33 1 2.4983 0.7191 -5.4111 34 1 0.9705 1.2003 -4.6278 35 1 0.7039 -0.1068 -6.8134 36 1 -0.1485 -0.8011 -5.4096 37 1 -0.6374 -1.3406 -8.9269 38 1 1.0721 -2.9376 -4.2835 39 1 2.5991 -3.4241 -5.0650 40 1 3.7257 -1.4182 -4.2827 41 1 2.8755 -2.1105 -2.8787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592375142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:38 Heat of formation + Delta-G solvation = -132.505970 kcal Electronic energy + Delta-G solvation = -22975.557368 eV Core-core repulsion = 19468.999695 eV Total energy + Delta-G solvation = -3506.557673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.45346 -40.91156 -38.58389 -37.28392 -36.15246 -35.59950 -33.04935 -32.18475 -29.98600 -28.96261 -28.08086 -25.43739 -24.50273 -23.51330 -22.12109 -20.87856 -19.97053 -18.93287 -18.73011 -17.86644 -17.46059 -16.96256 -16.70672 -16.58134 -16.38922 -15.52066 -15.40234 -15.31205 -14.94291 -14.66209 -14.30256 -14.01878 -13.70798 -13.36827 -13.22183 -13.13667 -12.88655 -12.66195 -12.50897 -12.44713 -12.29063 -12.08852 -11.99575 -11.97851 -11.83187 -11.67401 -11.63756 -11.31975 -10.62708 -10.57039 -9.74645 -8.63943 -7.87765 -5.36497 1.31758 1.47716 1.50359 1.59342 1.74891 2.03461 2.34788 2.52270 3.27323 3.54816 3.63226 3.92900 3.96491 4.00953 4.29037 4.32970 4.44538 4.52624 4.58034 4.61017 4.70126 4.70487 4.73689 4.75180 4.84525 4.93375 4.97348 5.09647 5.17638 5.29303 5.37636 5.47558 5.50612 5.62481 5.71362 5.76441 6.36212 6.62832 7.08768 7.10148 7.30889 7.80812 8.33775 9.17288 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.047848 B = 0.003188 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.048330 B = 8780.097635 C = 9036.209305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.060 4.060 3 H 0.058 0.942 4 C -0.104 4.104 5 C 0.478 3.522 6 O -0.554 6.554 7 O -0.514 6.514 8 C -0.125 4.125 9 C 0.501 3.499 10 O -0.591 6.591 11 N -0.605 5.605 12 C 0.102 3.898 13 C 0.172 3.828 14 N -0.610 5.610 15 C -0.261 4.261 16 H 0.077 0.923 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.969 3.031 20 H -0.284 1.284 21 H -0.298 1.298 22 H -0.267 1.267 23 C 0.123 3.877 24 C 0.098 3.902 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.424 0.576 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.065 0.935 36 H -0.011 1.011 37 H 0.249 0.751 38 H 0.017 0.983 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 -2.736 20.497 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.079 4.079 3 H 0.077 0.923 4 C -0.141 4.141 5 C 0.323 3.677 6 O -0.445 6.445 7 O -0.328 6.328 8 C -0.165 4.165 9 C 0.291 3.709 10 O -0.472 6.472 11 N -0.338 5.338 12 C -0.023 4.023 13 C 0.045 3.955 14 N -0.334 5.334 15 C -0.391 4.391 16 H 0.095 0.905 17 C -0.249 4.249 18 N -0.584 5.584 19 Si 0.797 3.203 20 H -0.211 1.211 21 H -0.224 1.224 22 H -0.191 1.191 23 C -0.003 4.003 24 C -0.025 4.025 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.286 0.714 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.007 0.993 37 H 0.058 0.942 38 H 0.035 0.965 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.550 -2.153 20.073 21.924 hybrid contribution -0.767 0.727 -0.955 1.424 sum 7.783 -1.426 19.118 20.691 Atomic orbital electron populations 1.22017 0.95949 1.01664 1.01854 1.20596 0.95930 0.99197 0.92189 0.92325 1.21510 1.05931 1.00315 0.86324 1.23942 0.74714 0.83335 0.85712 1.90739 1.39332 1.26856 1.87590 1.84505 1.74443 1.56602 1.17230 1.21801 1.05142 1.00279 0.89235 1.21504 0.78440 0.85518 0.85417 1.90636 1.42488 1.27334 1.86787 1.48204 1.54896 1.25258 1.05403 1.22017 0.99341 0.94967 0.85951 1.20839 0.90740 0.86771 0.97177 1.44284 1.64577 1.22324 1.02211 1.19576 1.04491 1.30263 0.84767 0.90516 1.25873 0.94893 1.01820 1.02277 1.70191 1.07348 1.50811 1.30088 0.85263 0.78250 0.77001 0.79830 1.21093 1.22427 1.19127 1.21622 0.96980 0.94230 0.87487 1.22507 0.94336 0.83652 1.02024 0.94027 0.91802 0.92819 0.84648 0.84169 0.71447 0.85971 0.84895 0.91964 0.91291 0.91637 0.99261 0.94155 0.96508 0.90066 0.90798 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 8.68 71.98 0.62 -3.49 16 2 C -0.06 -1.23 1.68 -10.79 -0.02 -1.25 16 3 H 0.06 1.56 7.77 -2.39 -0.02 1.54 16 4 C -0.10 -1.20 5.29 29.85 0.16 -1.05 16 5 C 0.48 8.07 8.05 71.23 0.57 8.64 16 6 O -0.55 -14.48 14.73 21.97 0.32 -14.16 16 7 O -0.51 -5.72 13.42 -51.40 -0.69 -6.41 16 8 C -0.13 -2.28 3.52 29.85 0.10 -2.18 16 9 C 0.50 15.71 7.41 87.66 0.65 16.36 16 10 O -0.59 -23.85 13.37 -3.02 -0.04 -23.89 16 11 N -0.61 -20.17 2.95 -817.23 -2.41 -22.58 16 12 C 0.10 4.16 6.59 86.41 0.57 4.73 16 13 C 0.17 8.44 5.51 86.41 0.48 8.92 16 14 N -0.61 -29.29 2.96 -697.40 -2.06 -31.36 16 15 C -0.26 -13.66 9.57 84.03 0.80 -12.86 16 16 H 0.08 3.80 7.89 -2.91 -0.02 3.77 16 17 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 18 N -0.94 -55.41 11.20 21.65 0.24 -55.16 16 19 Si 0.97 43.78 29.59 68.60 2.03 45.81 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 C 0.12 4.41 6.70 86.55 0.58 4.99 16 24 C 0.10 2.62 6.52 86.55 0.56 3.18 16 25 H 0.04 1.40 5.95 -2.38 -0.01 1.39 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.51 5.96 -2.39 -0.01 1.50 16 28 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.42 1.73 9.10 -74.05 -0.67 1.06 16 31 H 0.12 1.67 7.72 -2.39 -0.02 1.65 16 32 H 0.13 1.43 7.91 -2.39 -0.02 1.41 16 33 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.07 2.93 6.99 -2.39 -0.02 2.92 16 35 H 0.07 3.64 6.00 -2.39 -0.01 3.62 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 38 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.08 2.66 7.93 -2.39 -0.02 2.64 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.13 2.05 5.91 -2.39 -0.01 2.03 16 Total: -1.00 -78.73 328.40 3.26 -75.46 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.37 Total: 8.80 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 5.50 Total: 23.48 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -4.23 Total: -109.09 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -0.41 Total: -44.46 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -78.73 3.26 -75.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592375142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.045 kcal (2) G-P(sol) polarization free energy of solvation -78.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds