Wall clock time and date at job start Tue Mar 31 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52579 * 1 3 3 H 1.11026 * 106.94492 * 2 1 4 4 C 1.52764 * 110.69561 * 243.97506 * 2 1 3 5 5 C 1.53045 * 109.69464 * 287.21915 * 4 2 1 6 6 H 1.08693 * 110.40013 * 60.46094 * 5 4 2 7 7 C 1.50984 * 109.18448 * 180.31845 * 5 4 2 8 8 O 1.20826 * 120.00112 * 359.97438 * 7 5 4 9 9 O 1.34229 * 120.00304 * 180.02562 * 7 5 4 10 10 C 1.52874 * 108.62681 * 299.39100 * 5 4 2 11 11 C 1.52405 * 110.74943 * 58.28706 * 10 5 4 12 12 H 1.11218 * 106.78783 * 193.00993 * 11 10 5 13 13 C 1.52841 * 110.42793 * 77.61863 * 11 10 5 14 14 N 1.45014 * 113.23543 * 310.90947 * 11 10 5 15 15 C 1.46895 * 112.04793 * 176.65434 * 14 11 10 16 16 C 1.50704 * 109.47384 * 66.24770 * 15 14 11 17 17 O 1.21291 * 119.99711 * 6.24263 * 16 15 14 18 18 N 1.34777 * 120.00275 * 186.25365 * 16 15 14 19 19 C 1.37091 * 119.99972 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00059 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99902 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00092 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99949 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47068 * 0.02562 * 23 21 19 25 25 H 1.48511 * 109.47022 * 120.00176 * 23 21 19 26 26 H 1.48502 * 109.47354 * 240.00094 * 23 21 19 27 27 H 1.09005 * 109.46903 * 302.16957 * 1 2 3 28 28 H 1.09002 * 109.46924 * 62.16571 * 1 2 3 29 29 H 1.08994 * 109.47032 * 182.17114 * 1 2 3 30 30 H 1.09109 * 109.53534 * 47.29574 * 4 2 1 31 31 H 1.09097 * 109.58094 * 167.06648 * 4 2 1 32 32 H 0.96699 * 117.00126 * 180.02562 * 9 7 5 33 33 H 1.09323 * 109.22665 * 297.63573 * 10 5 4 34 34 H 1.09313 * 109.26315 * 179.01897 * 10 5 4 35 35 H 1.08998 * 109.46860 * 292.68362 * 13 11 10 36 36 H 1.08999 * 109.46891 * 52.68798 * 13 11 10 37 37 H 1.09003 * 109.46683 * 172.68906 * 13 11 10 38 38 H 1.09007 * 109.47130 * 186.24257 * 15 14 11 39 39 H 1.09001 * 109.47237 * 306.24385 * 15 14 11 40 40 H 0.96998 * 119.99822 * 359.97438 * 18 16 15 41 41 H 0.96996 * 120.00092 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5258 0.0000 0.0000 3 1 1.8494 1.0621 0.0000 4 6 2.0657 -0.6270 -1.2842 5 6 1.8489 -2.1416 -1.2493 6 1 0.7893 -2.3711 -1.1721 7 6 2.3933 -2.7501 -2.5194 8 8 2.8988 -2.0438 -3.3593 9 8 2.3147 -4.0756 -2.7160 10 6 2.6047 -2.7156 -0.0508 11 6 2.1267 -2.0743 1.2465 12 1 2.8642 -2.3501 2.0320 13 6 0.7889 -2.6749 1.6772 14 7 2.0817 -0.6261 1.1860 15 6 1.5438 -0.0391 2.4205 16 6 2.4949 -0.3043 3.5590 17 8 3.5708 -0.8208 3.3425 18 7 2.1500 0.0321 4.8177 19 6 3.0151 -0.2096 5.8533 20 1 3.9729 -0.6701 5.6606 21 6 2.6598 0.1378 7.1509 22 7 1.4947 0.6985 7.3853 23 14 3.8382 -0.1923 8.5622 24 1 5.0742 -0.8263 8.0370 25 1 4.1843 1.0892 9.2281 26 1 3.1934 -1.1017 9.5432 27 1 -0.3633 0.5472 0.8699 28 1 -0.3633 0.4798 -0.9088 29 1 -0.3633 -1.0269 0.0389 30 1 1.5422 -0.2059 -2.1439 31 1 3.1320 -0.4150 -1.3743 32 1 2.6771 -4.4188 -3.5441 33 1 3.6745 -2.5293 -0.1770 34 1 2.4425 -3.7957 -0.0058 35 1 0.0159 -2.3892 0.9638 36 1 0.8715 -3.7613 1.7079 37 1 0.5253 -2.3023 2.6671 38 1 1.4248 1.0365 2.2896 39 1 0.5756 -0.4872 2.6440 40 1 1.2897 0.4454 4.9907 41 1 1.2464 0.9407 8.2911 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594207628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:57 Heat of formation + Delta-G solvation = -155.836037 kcal Electronic energy + Delta-G solvation = -23543.923032 eV Core-core repulsion = 20036.353692 eV Total energy + Delta-G solvation = -3507.569340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.78319 -40.67997 -39.29924 -37.13194 -35.93911 -34.76510 -34.08700 -33.19153 -30.27488 -28.54616 -27.22618 -26.68594 -25.13519 -22.96743 -22.23946 -20.97869 -19.88598 -19.10826 -18.86648 -18.05900 -17.66709 -16.99415 -16.49735 -16.43864 -16.19499 -15.60601 -15.40567 -15.19475 -14.86808 -14.66529 -14.19567 -13.89075 -13.76780 -13.63053 -13.45279 -13.35586 -12.97684 -12.80583 -12.57999 -12.53379 -12.37007 -12.23700 -12.11321 -11.99684 -11.81895 -11.61018 -11.46640 -11.21476 -11.04799 -10.20643 -9.94402 -8.79164 -8.42566 -5.90608 1.18456 1.37962 1.42925 1.56730 2.10965 2.12365 2.30582 2.72849 3.24429 3.42673 3.57857 3.71156 3.91743 4.02822 4.15106 4.28113 4.33716 4.40255 4.47981 4.50990 4.56337 4.63998 4.66736 4.73406 4.85392 4.94953 4.98077 5.06689 5.13300 5.15363 5.22422 5.41602 5.45393 5.47693 5.62244 5.99165 6.26233 6.66908 6.69858 7.00116 7.18714 7.63375 8.20104 8.74864 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.032797 B = 0.003757 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.520306 B = 7450.766117 C = 7777.072614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.106 3.894 3 H 0.075 0.925 4 C -0.090 4.090 5 C -0.072 4.072 6 H 0.129 0.871 7 C 0.490 3.510 8 O -0.548 6.548 9 O -0.510 6.510 10 C -0.092 4.092 11 C 0.105 3.895 12 H 0.054 0.946 13 C -0.181 4.181 14 N -0.560 5.560 15 C 0.078 3.922 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.577 5.577 19 C -0.328 4.328 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.989 3.011 24 H -0.275 1.275 25 H -0.272 1.272 26 H -0.271 1.271 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.426 0.574 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.395 0.605 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.566 -5.666 -17.107 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.001 4.001 3 H 0.093 0.907 4 C -0.128 4.128 5 C -0.091 4.091 6 H 0.147 0.853 7 C 0.334 3.666 8 O -0.438 6.438 9 O -0.323 6.323 10 C -0.130 4.130 11 C -0.003 4.003 12 H 0.072 0.928 13 C -0.240 4.240 14 N -0.285 5.285 15 C -0.052 4.052 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.215 5.215 19 C -0.458 4.458 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.563 5.563 23 Si 0.814 3.186 24 H -0.199 1.199 25 H -0.198 1.198 26 H -0.196 1.196 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.288 0.712 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.228 0.772 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.522 -5.514 -16.985 18.692 hybrid contribution -0.122 -0.201 0.579 0.625 sum -5.644 -5.715 -16.406 18.267 Atomic orbital electron populations 1.22552 0.95605 1.02815 1.03319 1.21227 0.93434 0.98152 0.87304 0.90735 1.21466 1.02152 0.92047 0.97148 1.21040 1.02832 0.96077 0.89126 0.85295 1.23708 0.74509 0.80288 0.88086 1.90707 1.43252 1.63077 1.46809 1.84513 1.76432 1.23901 1.47453 1.21425 0.99288 1.00838 0.91414 1.21008 0.97008 0.84998 0.97289 0.92755 1.22525 0.98336 1.01897 1.01195 1.57191 1.63391 1.06821 1.01054 1.21483 0.94988 1.01116 0.87643 1.20968 0.89045 0.82862 0.84245 1.90465 1.26439 1.48607 1.84433 1.41943 1.18684 1.55296 1.05573 1.19659 1.00169 1.39133 0.86825 0.90506 1.25969 0.98484 0.96396 1.00388 1.69674 1.21560 1.42181 1.22898 0.84921 0.77929 0.78215 0.77575 1.19930 1.19763 1.19642 0.92238 0.90111 0.91778 0.88989 0.92310 0.71184 0.92732 0.88646 0.90468 0.90987 0.94100 0.87823 0.90935 0.77156 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 8.52 71.84 0.61 -2.63 16 2 C 0.11 2.46 2.39 45.02 0.11 2.57 16 3 H 0.07 1.77 8.25 -1.29 -0.01 1.76 16 4 C -0.09 -1.97 4.07 30.53 0.12 -1.84 16 5 C -0.07 -1.43 2.52 -11.48 -0.03 -1.45 16 6 H 0.13 2.02 6.69 -2.55 -0.02 2.01 16 7 C 0.49 10.06 7.61 71.33 0.54 10.61 16 8 O -0.55 -14.59 16.71 21.96 0.37 -14.22 16 9 O -0.51 -7.54 13.37 -51.40 -0.69 -8.23 16 10 C -0.09 -2.22 4.66 30.36 0.14 -2.08 16 11 C 0.10 3.15 2.21 45.02 0.10 3.25 16 12 H 0.05 2.19 6.18 -1.19 -0.01 2.19 16 13 C -0.18 -4.55 8.39 71.93 0.60 -3.94 16 14 N -0.56 -17.29 3.73 -855.92 -3.19 -20.48 16 15 C 0.08 2.64 3.99 85.56 0.34 2.98 16 16 C 0.44 20.82 7.44 87.66 0.65 21.47 16 17 O -0.61 -33.78 14.13 -3.06 -0.04 -33.82 16 18 N -0.58 -29.47 5.29 -306.98 -1.62 -31.10 16 19 C -0.33 -18.65 9.68 84.04 0.81 -17.83 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 22 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 23 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 H 0.06 1.09 7.14 -2.38 -0.02 1.08 16 28 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 29 H 0.06 1.06 4.70 -2.39 -0.01 1.05 16 30 H 0.09 1.72 8.05 -2.33 -0.02 1.70 16 31 H 0.06 1.55 8.09 -2.34 -0.02 1.53 16 32 H 0.43 2.70 9.10 -74.06 -0.67 2.02 16 33 H 0.05 1.52 8.17 -2.22 -0.02 1.50 16 34 H 0.10 1.97 8.00 -2.22 -0.02 1.95 16 35 H 0.08 1.54 5.04 -2.39 -0.01 1.53 16 36 H 0.07 1.62 8.04 -2.39 -0.02 1.60 16 37 H 0.04 1.20 6.48 -2.39 -0.02 1.19 16 38 H 0.10 3.15 7.87 -2.38 -0.02 3.13 16 39 H 0.07 2.20 5.83 -2.39 -0.01 2.18 16 40 H 0.39 19.18 7.90 -92.71 -0.73 18.44 16 41 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -71.49 323.23 1.30 -70.19 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.31 Total: 31.04 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 4.48 Total: 10.86 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -4.53 Total: -101.01 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -0.36 Total: -56.28 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -71.49 1.30 -70.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594207628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.642 kcal (2) G-P(sol) polarization free energy of solvation -71.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds