Wall clock time and date at job start Tue Mar 31 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.45768 * 2 1 4 4 C 1.53037 * 109.46599 * 240.02985 * 2 1 3 5 5 C 1.53119 * 109.28346 * 180.80565 * 4 2 1 6 6 C 1.50697 * 109.52367 * 177.55941 * 5 4 2 7 7 O 1.20832 * 119.99687 * 240.30986 * 6 5 4 8 8 O 1.34231 * 120.00496 * 60.31394 * 6 5 4 9 9 C 1.53121 * 109.16142 * 57.64942 * 5 4 2 10 10 C 1.53040 * 109.27978 * 302.35066 * 9 5 4 11 11 H 1.08991 * 109.45523 * 179.19310 * 10 9 5 12 12 C 1.53006 * 109.45969 * 299.16281 * 10 9 5 13 13 N 1.46844 * 109.52457 * 59.17651 * 10 9 5 14 14 C 1.46902 * 111.00076 * 174.16219 * 13 10 9 15 15 C 1.50700 * 109.46730 * 293.99305 * 14 13 10 16 16 O 1.21283 * 120.00594 * 354.38736 * 15 14 13 17 17 N 1.34773 * 119.99506 * 174.38646 * 15 14 13 18 18 C 1.37098 * 119.99917 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99830 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99849 * 179.97438 * 18 17 15 21 21 N 1.31398 * 120.00424 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99496 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47303 * 60.00729 * 22 20 18 24 24 H 1.48507 * 109.47008 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47594 * 300.00279 * 22 20 18 26 26 H 1.08997 * 109.46968 * 307.03695 * 1 2 3 27 27 H 1.08994 * 109.46873 * 67.03878 * 1 2 3 28 28 H 1.09002 * 109.46605 * 187.03472 * 1 2 3 29 29 H 1.09001 * 109.50769 * 60.85790 * 4 2 1 30 30 H 1.09006 * 109.53130 * 300.76557 * 4 2 1 31 31 H 1.09001 * 109.57049 * 297.71796 * 5 4 2 32 32 H 0.96690 * 116.99974 * 179.97438 * 8 6 5 33 33 H 1.08996 * 109.50437 * 182.40812 * 9 5 4 34 34 H 1.09000 * 109.53450 * 62.30941 * 9 5 4 35 35 H 1.08995 * 109.46948 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47177 * 300.05504 * 12 10 9 37 37 H 1.09001 * 109.46957 * 60.05614 * 12 10 9 38 38 H 1.09000 * 109.46847 * 173.99356 * 14 13 10 39 39 H 1.08995 * 109.46723 * 53.99338 * 14 13 10 40 40 H 0.97008 * 120.00554 * 359.97438 * 17 15 14 41 41 H 0.97001 * 120.00620 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7208 -1.2500 5 6 3.5710 -0.7360 -1.2356 6 6 4.0784 -1.4967 -2.4335 7 8 4.7576 -2.4840 -2.2788 8 8 3.7758 -1.0775 -3.6723 9 6 4.0549 -1.4187 0.0467 10 6 3.4865 -0.6777 1.2591 11 1 3.8176 -1.1699 2.1734 12 6 3.9832 0.7695 1.2508 13 7 2.0193 -0.6917 1.1994 14 6 1.4373 -0.1105 2.4166 15 6 1.7575 -0.9916 3.5965 16 8 2.3175 -2.0538 3.4260 17 7 1.4214 -0.5992 4.8413 18 6 1.7121 -1.4009 5.9147 19 1 2.2108 -2.3468 5.7628 20 6 1.3661 -0.9961 7.1981 21 7 0.7598 0.1549 7.3830 22 14 1.7616 -2.0889 8.6606 23 1 3.2291 -2.3035 8.7357 24 1 1.2922 -1.4349 9.9085 25 1 1.0776 -3.3971 8.5005 26 1 -0.3633 0.6190 0.8203 27 1 -0.3633 0.4009 -0.9462 28 1 -0.3632 -1.0200 0.1259 29 1 1.6895 -0.1981 -2.1400 30 1 1.6659 -1.7446 -1.2583 31 1 3.9466 0.2868 -1.2677 32 1 4.1243 -1.5977 -4.4091 33 1 5.1440 -1.3946 0.0832 34 1 3.7132 -2.4537 0.0598 35 1 3.5789 1.2973 2.1145 36 1 5.0722 0.7801 1.2951 37 1 3.6519 1.2621 0.3366 38 1 0.3560 -0.0353 2.3020 39 1 1.8553 0.8826 2.5807 40 1 0.9738 0.2506 4.9778 41 1 0.5179 0.4374 8.2789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594207630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:52 Heat of formation + Delta-G solvation = -127.568303 kcal Electronic energy + Delta-G solvation = -23494.869471 eV Core-core repulsion = 19988.525912 eV Total energy + Delta-G solvation = -3506.343559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83384 -39.51309 -37.67150 -36.27250 -34.05930 -33.57816 -32.99808 -31.18610 -28.93426 -26.86116 -26.61099 -25.00727 -23.66219 -22.10385 -20.61908 -19.29540 -18.54519 -18.11755 -17.73245 -16.81240 -16.21692 -15.82810 -15.46611 -15.23513 -14.53705 -14.31465 -13.98514 -13.84021 -13.46268 -13.24928 -13.14487 -12.70773 -12.40238 -12.18208 -12.09323 -11.78999 -11.64757 -11.58747 -11.45898 -11.40837 -11.04557 -10.91576 -10.78788 -10.61568 -10.42449 -10.20769 -10.13735 -10.12128 -9.41906 -8.37662 -7.93843 -7.77977 -6.39069 -3.79594 2.09385 2.90970 3.21987 3.27371 3.31917 3.94069 3.95780 4.24736 4.53897 4.64277 4.80258 5.03412 5.13888 5.26593 5.29391 5.31865 5.32832 5.41022 5.50692 5.57656 5.60326 5.70837 5.78982 5.85087 5.95658 6.04842 6.06120 6.14149 6.22119 6.28346 6.32006 6.33979 6.44798 6.62351 7.35082 7.48215 7.57680 7.76765 8.09650 8.65391 9.21382 9.58164 10.10467 10.78735 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030861 B = 0.003813 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.064466 B = 7340.927765 C = 7773.406110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 H 0.046 0.954 4 C -0.098 4.098 5 C -0.082 4.082 6 C 0.482 3.518 7 O -0.512 6.512 8 O -0.519 6.519 9 C -0.091 4.091 10 C 0.080 3.920 11 H 0.114 0.886 12 C -0.193 4.193 13 N -0.503 5.503 14 C 0.039 3.961 15 C 0.444 3.556 16 O -0.576 6.576 17 N -0.566 5.566 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.406 0.594 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.391 0.609 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 4.660 -17.977 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 H 0.064 0.936 4 C -0.136 4.136 5 C -0.101 4.101 6 C 0.325 3.675 7 O -0.400 6.400 8 O -0.331 6.331 9 C -0.129 4.129 10 C -0.028 4.028 11 H 0.131 0.869 12 C -0.252 4.252 13 N -0.227 5.227 14 C -0.092 4.092 15 C 0.229 3.771 16 O -0.459 6.459 17 N -0.203 5.203 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.264 0.736 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.224 0.776 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.155 3.489 -17.559 18.031 hybrid contribution 0.392 0.609 0.430 0.843 sum 2.547 4.099 -17.129 17.796 Atomic orbital electron populations 1.21929 0.94133 1.03117 1.01533 1.21611 0.95578 0.95639 0.90230 0.93640 1.21607 0.91449 1.02771 0.97803 1.21245 0.98282 1.00358 0.90177 1.23691 0.76608 0.83096 0.84135 1.90728 1.36402 1.26242 1.86595 1.84554 1.72962 1.58520 1.17025 1.21501 1.00229 1.00716 0.90413 1.21822 0.86847 0.94100 1.00069 0.86853 1.22580 1.01922 0.98947 1.01701 1.61785 1.06704 1.53919 1.00334 1.21979 1.00828 0.96198 0.90229 1.19772 0.85177 0.88389 0.83712 1.90505 1.46121 1.24418 1.84902 1.41870 1.52849 1.20785 1.04784 1.19645 1.36047 1.02794 0.84281 0.87999 1.25234 0.96993 0.96743 0.98930 1.69595 1.40906 1.20500 1.23488 0.85941 0.78933 0.79672 0.79812 1.19945 1.21036 1.19916 0.92143 0.92291 0.91340 0.90464 0.90356 0.87601 0.73562 0.90983 0.89813 0.92117 0.92052 0.92650 0.88844 0.93288 0.77580 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.54 37.16 0.32 -1.33 16 2 C 0.08 0.94 2.15 -67.72 -0.15 0.79 16 3 H 0.05 0.51 6.19 -51.92 -0.32 0.19 16 4 C -0.10 -1.07 4.59 -26.65 -0.12 -1.19 16 5 C -0.08 -0.92 2.39 -91.65 -0.22 -1.14 16 6 C 0.48 5.61 7.63 36.00 0.27 5.88 16 7 O -0.51 -7.66 16.73 -18.75 -0.31 -7.97 16 8 O -0.52 -4.43 13.36 -39.26 -0.52 -4.96 16 9 C -0.09 -1.27 4.20 -26.65 -0.11 -1.38 16 10 C 0.08 1.24 2.59 -67.72 -0.18 1.07 16 11 H 0.11 2.22 6.00 -51.93 -0.31 1.91 16 12 C -0.19 -2.49 8.19 37.16 0.30 -2.19 16 13 N -0.50 -7.96 4.14 -220.18 -0.91 -8.87 16 14 C 0.04 0.67 5.01 -4.98 -0.02 0.64 16 15 C 0.44 10.28 7.33 -10.99 -0.08 10.20 16 16 O -0.58 -15.30 14.22 5.55 0.08 -15.22 16 17 N -0.57 -14.17 5.29 -10.97 -0.06 -14.23 16 18 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 22 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.11 1.03 6.56 -51.93 -0.34 0.69 16 32 H 0.41 1.80 9.10 45.56 0.41 2.21 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.36 8.04 -51.93 -0.42 0.95 16 35 H 0.06 0.85 6.42 -51.93 -0.33 0.51 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.61 4.80 -51.93 -0.25 0.36 16 38 H 0.09 1.48 5.80 -51.93 -0.30 1.18 16 39 H 0.05 0.78 6.21 -51.93 -0.32 0.46 16 40 H 0.39 9.39 7.90 -40.82 -0.32 9.06 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -32.57 323.32 -6.27 -38.84 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -4.89 Total: 11.77 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.22 Total: 3.46 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.25 Total: -46.87 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.76 Total: -28.14 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.57 -6.27 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594207630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.725 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds