Wall clock time and date at job start Tue Mar 31 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.45768 * 2 1 4 4 C 1.53037 * 109.46599 * 240.02985 * 2 1 3 5 5 C 1.53119 * 109.28346 * 180.80565 * 4 2 1 6 6 C 1.50697 * 109.52367 * 177.55941 * 5 4 2 7 7 O 1.20832 * 119.99687 * 240.30986 * 6 5 4 8 8 O 1.34231 * 120.00496 * 60.31394 * 6 5 4 9 9 C 1.53121 * 109.16142 * 57.64942 * 5 4 2 10 10 C 1.53040 * 109.27978 * 302.35066 * 9 5 4 11 11 H 1.08991 * 109.45523 * 179.19310 * 10 9 5 12 12 C 1.53006 * 109.45969 * 299.16281 * 10 9 5 13 13 N 1.46844 * 109.52457 * 59.17651 * 10 9 5 14 14 C 1.46902 * 111.00076 * 174.16219 * 13 10 9 15 15 C 1.50700 * 109.46730 * 293.99305 * 14 13 10 16 16 O 1.21283 * 120.00594 * 354.38736 * 15 14 13 17 17 N 1.34773 * 119.99506 * 174.38646 * 15 14 13 18 18 C 1.37098 * 119.99917 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99830 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99849 * 179.97438 * 18 17 15 21 21 N 1.31398 * 120.00424 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99496 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47303 * 60.00729 * 22 20 18 24 24 H 1.48507 * 109.47008 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47594 * 300.00279 * 22 20 18 26 26 H 1.08997 * 109.46968 * 307.03695 * 1 2 3 27 27 H 1.08994 * 109.46873 * 67.03878 * 1 2 3 28 28 H 1.09002 * 109.46605 * 187.03472 * 1 2 3 29 29 H 1.09001 * 109.50769 * 60.85790 * 4 2 1 30 30 H 1.09006 * 109.53130 * 300.76557 * 4 2 1 31 31 H 1.09001 * 109.57049 * 297.71796 * 5 4 2 32 32 H 0.96690 * 116.99974 * 179.97438 * 8 6 5 33 33 H 1.08996 * 109.50437 * 182.40812 * 9 5 4 34 34 H 1.09000 * 109.53450 * 62.30941 * 9 5 4 35 35 H 1.08995 * 109.46948 * 180.02562 * 12 10 9 36 36 H 1.08996 * 109.47177 * 300.05504 * 12 10 9 37 37 H 1.09001 * 109.46957 * 60.05614 * 12 10 9 38 38 H 1.09000 * 109.46847 * 173.99356 * 14 13 10 39 39 H 1.08995 * 109.46723 * 53.99338 * 14 13 10 40 40 H 0.97008 * 120.00554 * 359.97438 * 17 15 14 41 41 H 0.97001 * 120.00620 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0400 -0.7208 -1.2500 5 6 3.5710 -0.7360 -1.2356 6 6 4.0784 -1.4967 -2.4335 7 8 4.7576 -2.4840 -2.2788 8 8 3.7758 -1.0775 -3.6723 9 6 4.0549 -1.4187 0.0467 10 6 3.4865 -0.6777 1.2591 11 1 3.8176 -1.1699 2.1734 12 6 3.9832 0.7695 1.2508 13 7 2.0193 -0.6917 1.1994 14 6 1.4373 -0.1105 2.4166 15 6 1.7575 -0.9916 3.5965 16 8 2.3175 -2.0538 3.4260 17 7 1.4214 -0.5992 4.8413 18 6 1.7121 -1.4009 5.9147 19 1 2.2108 -2.3468 5.7628 20 6 1.3661 -0.9961 7.1981 21 7 0.7598 0.1549 7.3830 22 14 1.7616 -2.0889 8.6606 23 1 3.2291 -2.3035 8.7357 24 1 1.2922 -1.4349 9.9085 25 1 1.0776 -3.3971 8.5005 26 1 -0.3633 0.6190 0.8203 27 1 -0.3633 0.4009 -0.9462 28 1 -0.3632 -1.0200 0.1259 29 1 1.6895 -0.1981 -2.1400 30 1 1.6659 -1.7446 -1.2583 31 1 3.9466 0.2868 -1.2677 32 1 4.1243 -1.5977 -4.4091 33 1 5.1440 -1.3946 0.0832 34 1 3.7132 -2.4537 0.0598 35 1 3.5789 1.2973 2.1145 36 1 5.0722 0.7801 1.2951 37 1 3.6519 1.2621 0.3366 38 1 0.3560 -0.0353 2.3020 39 1 1.8553 0.8826 2.5807 40 1 0.9738 0.2506 4.9778 41 1 0.5179 0.4374 8.2789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594207630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:51 Heat of formation + Delta-G solvation = -152.564782 kcal Electronic energy + Delta-G solvation = -23495.953400 eV Core-core repulsion = 19988.525912 eV Total energy + Delta-G solvation = -3507.427488 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83618 -40.71795 -39.36037 -37.11843 -35.95731 -34.80486 -34.06874 -33.21168 -30.15061 -28.21447 -27.61137 -26.57304 -25.01686 -23.13978 -21.63972 -20.95256 -19.97558 -19.48911 -18.97729 -17.80099 -17.68654 -16.97729 -16.72555 -16.57289 -16.28973 -15.62435 -15.58021 -15.00197 -14.90070 -14.53599 -14.18050 -13.94341 -13.63284 -13.42333 -13.30697 -13.13465 -13.04494 -12.83742 -12.53011 -12.51332 -12.45363 -12.41420 -12.12523 -12.01358 -11.85395 -11.63541 -11.50996 -11.17175 -11.13780 -10.21306 -9.96629 -9.03401 -8.44212 -5.92277 1.20100 1.40090 1.41556 1.52182 2.10302 2.11625 2.29811 2.78166 3.22867 3.40460 3.57709 3.72203 3.89730 4.05401 4.20621 4.30554 4.34257 4.42855 4.46869 4.50142 4.54602 4.60662 4.64906 4.73086 4.87340 4.95055 5.02948 5.09513 5.13962 5.19009 5.23250 5.37869 5.42718 5.50348 5.63722 5.95664 6.17746 6.38007 6.64771 7.01381 7.16581 7.61083 8.17988 8.73074 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030861 B = 0.003813 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.064466 B = 7340.927765 C = 7773.406110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.077 3.923 3 H 0.067 0.933 4 C -0.093 4.093 5 C -0.076 4.076 6 C 0.491 3.509 7 O -0.554 6.554 8 O -0.505 6.505 9 C -0.084 4.084 10 C 0.081 3.919 11 H 0.061 0.939 12 C -0.184 4.184 13 N -0.525 5.525 14 C 0.053 3.947 15 C 0.442 3.558 16 O -0.615 6.615 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.989 3.011 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.426 0.574 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.395 0.605 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 6.613 -19.709 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 H 0.085 0.915 4 C -0.130 4.130 5 C -0.095 4.095 6 C 0.335 3.665 7 O -0.445 6.445 8 O -0.319 6.319 9 C -0.122 4.122 10 C -0.028 4.028 11 H 0.079 0.921 12 C -0.243 4.243 13 N -0.250 5.250 14 C -0.077 4.077 15 C 0.229 3.771 16 O -0.501 6.501 17 N -0.214 5.214 18 C -0.461 4.461 19 H 0.094 0.906 20 C -0.211 4.211 21 N -0.562 5.562 22 Si 0.813 3.187 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.199 1.199 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.288 0.712 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.087 0.913 40 H 0.229 0.771 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.627 5.473 -19.333 20.159 hybrid contribution 0.556 -0.027 0.863 1.027 sum 2.183 5.446 -18.470 19.380 Atomic orbital electron populations 1.21938 0.93175 1.02224 1.03246 1.21783 0.96356 0.96338 0.88597 0.91506 1.21610 0.90822 1.02116 0.98486 1.21177 0.98674 1.01125 0.88543 1.23613 0.75631 0.82176 0.85054 1.90730 1.38434 1.28042 1.87271 1.84488 1.72395 1.58414 1.16563 1.21326 1.00125 0.98972 0.91791 1.21617 0.87132 0.95646 0.98397 0.92069 1.22490 1.02432 0.96707 1.02623 1.61721 1.06819 1.55426 1.01033 1.21821 1.02129 0.95359 0.88432 1.20875 0.83188 0.88409 0.84622 1.90483 1.47393 1.26559 1.85675 1.41931 1.53561 1.20795 1.05096 1.19590 1.37674 1.02859 0.86003 0.90576 1.25968 0.96380 0.97994 1.00787 1.69653 1.40898 1.21284 1.24360 0.85044 0.78630 0.78001 0.76992 1.19837 1.19427 1.19874 0.92084 0.89296 0.93189 0.87166 0.92182 0.84855 0.71207 0.90955 0.93216 0.93206 0.91225 0.89689 0.86955 0.91297 0.77103 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.54 71.98 0.61 -2.21 16 2 C 0.08 1.63 2.15 44.94 0.10 1.73 16 3 H 0.07 1.19 6.19 -2.38 -0.01 1.17 16 4 C -0.09 -1.74 4.59 30.65 0.14 -1.60 16 5 C -0.08 -1.54 2.39 -11.46 -0.03 -1.57 16 6 C 0.49 10.43 7.63 71.24 0.54 10.97 16 7 O -0.55 -16.32 16.73 21.95 0.37 -15.95 16 8 O -0.51 -6.88 13.36 -51.43 -0.69 -7.57 16 9 C -0.08 -2.38 4.20 30.65 0.13 -2.25 16 10 C 0.08 2.53 2.59 44.94 0.12 2.65 16 11 H 0.06 2.56 6.00 -2.39 -0.01 2.55 16 12 C -0.18 -4.42 8.19 71.98 0.59 -3.83 16 13 N -0.52 -16.33 4.14 -850.52 -3.52 -19.85 16 14 C 0.05 1.82 5.01 85.56 0.43 2.25 16 15 C 0.44 21.15 7.33 87.66 0.64 21.80 16 16 O -0.62 -34.54 14.22 -3.04 -0.04 -34.58 16 17 N -0.58 -29.75 5.29 -307.00 -1.62 -31.37 16 18 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 21 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 22 Si 0.99 43.52 29.55 68.60 2.03 45.54 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 26 H 0.06 1.15 6.53 -2.39 -0.02 1.14 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.13 2.02 6.56 -2.39 -0.02 2.00 16 32 H 0.43 2.40 9.10 -74.06 -0.67 1.73 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 35 H 0.05 1.31 6.42 -2.39 -0.02 1.29 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.52 4.80 -2.39 -0.01 1.51 16 38 H 0.11 3.42 5.80 -2.39 -0.01 3.41 16 39 H 0.07 2.09 6.21 -2.39 -0.01 2.08 16 40 H 0.40 19.34 7.90 -92.70 -0.73 18.61 16 41 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -74.08 323.32 1.03 -73.05 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: -0.33 Total: 30.84 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 4.55 Total: 9.54 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -4.86 Total: -100.86 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -0.36 Total: -58.10 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.08 1.03 -73.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594207630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.515 kcal (2) G-P(sol) polarization free energy of solvation -74.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds