Wall clock time and date at job start Tue Mar 31 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48503 * 109.47137 * 240.00080 * 3 2 1 5 5 H 1.48498 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47333 * 119.99752 * 3 2 1 7 7 C 1.37877 * 120.00566 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00656 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47373 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47661 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99575 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00499 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99986 * 179.97438 * 13 11 10 15 15 C 1.53117 * 109.51975 * 205.00235 * 14 13 11 16 16 C 1.53032 * 109.27488 * 182.37988 * 15 14 13 17 17 N 1.46845 * 109.52688 * 59.18113 * 16 15 14 18 18 C 1.46901 * 111.00308 * 174.16016 * 17 16 15 19 19 C 1.50700 * 109.47050 * 293.61632 * 18 17 16 20 20 O 1.20826 * 120.00007 * 353.72237 * 19 18 17 21 21 O 1.34224 * 120.00321 * 173.72860 * 19 18 17 22 22 C 1.46845 * 111.19745 * 298.25875 * 17 16 15 23 23 C 1.53036 * 109.52724 * 61.73869 * 22 17 16 24 24 H 0.96995 * 120.00199 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47393 * 59.99316 * 9 7 2 26 26 H 1.09007 * 109.46943 * 299.99935 * 9 7 2 27 27 H 1.09001 * 109.47553 * 59.99251 * 10 9 7 28 28 H 1.09007 * 109.46899 * 299.99799 * 10 9 7 29 29 H 0.96994 * 119.99558 * 0.02562 * 13 11 10 30 30 H 1.08992 * 109.52204 * 325.12948 * 14 13 11 31 31 H 1.09000 * 109.50183 * 62.43632 * 15 14 13 32 32 H 1.08996 * 109.50283 * 302.32118 * 15 14 13 33 33 H 1.09000 * 109.46406 * 299.15893 * 16 15 14 34 34 H 1.09002 * 109.45139 * 179.18916 * 16 15 14 35 35 H 1.08998 * 109.47346 * 173.61543 * 18 17 16 36 36 H 1.08994 * 109.47277 * 53.61471 * 18 17 16 37 37 H 0.96692 * 117.00634 * 179.97438 * 21 19 18 38 38 H 1.08997 * 109.46971 * 181.75801 * 22 17 16 39 39 H 1.09002 * 109.46179 * 301.72188 * 22 17 16 40 40 H 1.08996 * 109.50756 * 180.88046 * 23 22 17 41 41 H 1.09000 * 109.50100 * 60.75848 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2513 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4921 -4.9672 0.0025 12 8 0.2792 -4.9672 0.0015 13 7 2.1661 -6.1343 0.0031 14 6 1.4336 -7.4031 0.0043 15 6 2.3107 -8.4997 0.6148 16 6 1.5633 -9.8339 0.5590 17 7 1.2427 -10.1590 -0.8366 18 6 0.6479 -11.4981 -0.9421 19 6 1.6751 -12.5350 -0.5668 20 8 2.8177 -12.2043 -0.3549 21 8 1.3207 -13.8258 -0.4682 22 6 0.3625 -9.1441 -1.4295 23 6 1.0740 -7.7891 -1.4332 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.8716 -3.6038 0.8922 28 1 2.8728 -3.6046 -0.8878 29 1 3.1360 -6.1342 0.0035 30 1 0.5218 -7.2967 0.5918 31 1 2.5348 -8.2510 1.6521 32 1 3.2396 -8.5791 0.0502 33 1 0.6412 -9.7580 1.1353 34 1 2.1910 -10.6194 0.9799 35 1 0.3166 -11.6689 -1.9663 36 1 -0.2051 -11.5709 -0.2674 37 1 2.0143 -14.4542 -0.2252 38 1 0.1178 -9.4285 -2.4528 39 1 -0.5540 -9.0714 -0.8440 40 1 0.4146 -7.0329 -1.8590 41 1 1.9836 -7.8574 -2.0300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:41 Heat of formation + Delta-G solvation = -136.374710 kcal Electronic energy + Delta-G solvation = -22149.928683 eV Core-core repulsion = 18643.203249 eV Total energy + Delta-G solvation = -3506.725434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78900 -39.67167 -38.35932 -36.45078 -34.98383 -33.41676 -31.98804 -31.09528 -30.74698 -28.01887 -25.69034 -23.73418 -23.32206 -21.75103 -21.23399 -20.21123 -19.39632 -18.44258 -16.92354 -16.88601 -16.53821 -16.36754 -15.63588 -15.41640 -15.01980 -14.82723 -14.43230 -14.33659 -13.80301 -13.43879 -13.16207 -13.13648 -12.72544 -12.36095 -12.17981 -12.09632 -11.82338 -11.65518 -11.39529 -11.13296 -11.01406 -10.90185 -10.81043 -10.61553 -10.49965 -9.92334 -9.63624 -9.15395 -8.98003 -8.77415 -8.70864 -8.29816 -5.94205 -3.98520 1.84139 2.45952 3.29071 3.35853 3.40187 3.41808 3.51009 3.58795 4.48939 4.55770 4.58298 4.70094 4.77305 4.88508 4.97883 5.02082 5.16156 5.32889 5.37387 5.40533 5.47075 5.58229 5.71660 5.76459 5.87449 6.07396 6.11816 6.23350 6.27192 6.29195 6.53529 6.66712 6.82047 6.93253 7.54475 7.76219 7.88878 7.95466 8.09448 8.41198 8.83087 9.10143 9.64821 11.16709 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.060707 B = 0.002475 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.120511 B =11312.471739 C =11540.061915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.131 4.131 11 C 0.511 3.489 12 O -0.536 6.536 13 N -0.740 5.740 14 C 0.143 3.857 15 C -0.120 4.120 16 C 0.055 3.945 17 N -0.527 5.527 18 C 0.063 3.937 19 C 0.476 3.524 20 O -0.494 6.494 21 O -0.522 6.522 22 C 0.062 3.938 23 C -0.126 4.126 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.397 0.603 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.264 -27.207 -1.135 27.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.171 4.171 11 C 0.299 3.701 12 O -0.412 6.412 13 N -0.392 5.392 14 C 0.038 3.962 15 C -0.158 4.158 16 C -0.073 4.073 17 N -0.253 5.253 18 C -0.066 4.066 19 C 0.316 3.684 20 O -0.380 6.380 21 O -0.334 6.334 22 C -0.066 4.066 23 C -0.165 4.165 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.231 0.769 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.270 0.730 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.653 -26.680 -1.438 26.850 hybrid contribution 0.681 0.427 0.573 0.987 sum 3.334 -26.253 -0.866 26.478 Atomic orbital electron populations 1.69986 1.06048 1.26667 1.50196 1.25028 0.94834 0.99218 0.95336 0.86648 0.79535 0.83172 0.78542 1.20255 1.21310 1.20260 1.21199 0.92903 0.91063 1.51393 0.92664 1.18884 0.93169 0.89380 0.98551 1.21867 1.00711 0.92039 1.02455 1.21562 0.88662 0.85705 0.74156 1.90657 1.14473 1.87657 1.48379 1.46256 1.09976 1.05310 1.77703 1.20895 0.95963 0.83261 0.96114 1.21809 0.99482 0.92922 1.01584 1.22179 0.99298 0.98255 0.87593 1.61622 1.44659 0.99813 1.19222 1.21508 0.93346 0.87271 1.04485 1.23367 0.89165 0.82234 0.73586 1.90737 1.21372 1.81135 1.44764 1.84507 1.47272 1.19138 1.82503 1.22099 0.93603 0.91127 0.99721 1.21990 1.01630 0.95231 0.97696 0.92917 0.95862 0.95893 0.90314 0.90267 0.76906 0.89970 0.90715 0.90279 0.94505 0.89554 0.86283 0.90518 0.72980 0.90050 0.93992 0.90284 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 10 C -0.13 -2.67 5.64 -27.89 -0.16 -2.83 16 11 C 0.51 9.79 7.80 -10.98 -0.09 9.71 16 12 O -0.54 -12.52 15.65 5.55 0.09 -12.44 16 13 N -0.74 -10.41 5.08 -53.68 -0.27 -10.68 16 14 C 0.14 1.79 2.52 -67.80 -0.17 1.62 16 15 C -0.12 -1.21 5.57 -26.65 -0.15 -1.36 16 16 C 0.05 0.52 5.12 -3.84 -0.02 0.50 16 17 N -0.53 -4.82 4.35 -236.12 -1.03 -5.85 16 18 C 0.06 0.43 5.56 -4.98 -0.03 0.40 16 19 C 0.48 3.80 7.86 36.01 0.28 4.08 16 20 O -0.49 -5.64 15.47 -18.75 -0.29 -5.93 16 21 O -0.52 -2.89 13.42 -39.24 -0.53 -3.41 16 22 C 0.06 0.57 5.46 -3.84 -0.02 0.55 16 23 C -0.13 -1.48 5.68 -26.65 -0.15 -1.63 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 26 H 0.02 0.68 8.10 -51.92 -0.42 0.26 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 29 H 0.40 4.50 8.60 -40.82 -0.35 4.15 16 30 H 0.08 1.20 7.58 -51.93 -0.39 0.81 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.86 6.06 -51.93 -0.31 0.55 16 35 H 0.12 0.59 7.98 -51.93 -0.41 0.18 16 36 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.41 0.70 9.10 45.56 0.41 1.12 16 38 H 0.08 0.63 8.01 -51.93 -0.42 0.21 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -36.57 340.97 -7.86 -44.43 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.66 Total: 0.69 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.03 Total: -1.86 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.56 Total: -43.41 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.73 Total: -21.78 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.57 -7.86 -44.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.941 kcal (2) G-P(sol) polarization free energy of solvation -36.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds