Wall clock time and date at job start Tue Mar 31 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48503 * 109.47137 * 240.00080 * 3 2 1 5 5 H 1.48498 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47333 * 119.99752 * 3 2 1 7 7 C 1.37877 * 120.00566 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00656 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47373 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47661 * 179.97438 * 10 9 7 12 12 O 1.21289 * 119.99575 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00499 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99986 * 179.97438 * 13 11 10 15 15 C 1.53117 * 109.51975 * 205.00235 * 14 13 11 16 16 C 1.53032 * 109.27488 * 182.37988 * 15 14 13 17 17 N 1.46845 * 109.52688 * 59.18113 * 16 15 14 18 18 C 1.46901 * 111.00308 * 174.16016 * 17 16 15 19 19 C 1.50700 * 109.47050 * 293.61632 * 18 17 16 20 20 O 1.20826 * 120.00007 * 353.72237 * 19 18 17 21 21 O 1.34224 * 120.00321 * 173.72860 * 19 18 17 22 22 C 1.46845 * 111.19745 * 298.25875 * 17 16 15 23 23 C 1.53036 * 109.52724 * 61.73869 * 22 17 16 24 24 H 0.96995 * 120.00199 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47393 * 59.99316 * 9 7 2 26 26 H 1.09007 * 109.46943 * 299.99935 * 9 7 2 27 27 H 1.09001 * 109.47553 * 59.99251 * 10 9 7 28 28 H 1.09007 * 109.46899 * 299.99799 * 10 9 7 29 29 H 0.96994 * 119.99558 * 0.02562 * 13 11 10 30 30 H 1.08992 * 109.52204 * 325.12948 * 14 13 11 31 31 H 1.09000 * 109.50183 * 62.43632 * 15 14 13 32 32 H 1.08996 * 109.50283 * 302.32118 * 15 14 13 33 33 H 1.09000 * 109.46406 * 299.15893 * 16 15 14 34 34 H 1.09002 * 109.45139 * 179.18916 * 16 15 14 35 35 H 1.08998 * 109.47346 * 173.61543 * 18 17 16 36 36 H 1.08994 * 109.47277 * 53.61471 * 18 17 16 37 37 H 0.96692 * 117.00634 * 179.97438 * 21 19 18 38 38 H 1.08997 * 109.46971 * 181.75801 * 22 17 16 39 39 H 1.09002 * 109.46179 * 301.72188 * 22 17 16 40 40 H 1.08996 * 109.50756 * 180.88046 * 23 22 17 41 41 H 1.09000 * 109.50100 * 60.75848 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2513 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4921 -4.9672 0.0025 12 8 0.2792 -4.9672 0.0015 13 7 2.1661 -6.1343 0.0031 14 6 1.4336 -7.4031 0.0043 15 6 2.3107 -8.4997 0.6148 16 6 1.5633 -9.8339 0.5590 17 7 1.2427 -10.1590 -0.8366 18 6 0.6479 -11.4981 -0.9421 19 6 1.6751 -12.5350 -0.5668 20 8 2.8177 -12.2043 -0.3549 21 8 1.3207 -13.8258 -0.4682 22 6 0.3625 -9.1441 -1.4295 23 6 1.0740 -7.7891 -1.4332 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.8716 -3.6038 0.8922 28 1 2.8728 -3.6046 -0.8878 29 1 3.1360 -6.1342 0.0035 30 1 0.5218 -7.2967 0.5918 31 1 2.5348 -8.2510 1.6521 32 1 3.2396 -8.5791 0.0502 33 1 0.6412 -9.7580 1.1353 34 1 2.1910 -10.6194 0.9799 35 1 0.3166 -11.6689 -1.9663 36 1 -0.2051 -11.5709 -0.2674 37 1 2.0143 -14.4542 -0.2252 38 1 0.1178 -9.4285 -2.4528 39 1 -0.5540 -9.0714 -0.8440 40 1 0.4146 -7.0329 -1.8590 41 1 1.9836 -7.8574 -2.0300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:41 Heat of formation + Delta-G solvation = -165.310193 kcal Electronic energy + Delta-G solvation = -22151.183420 eV Core-core repulsion = 18643.203249 eV Total energy + Delta-G solvation = -3507.980171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46094 -40.86598 -39.41399 -37.05903 -36.10368 -35.51447 -33.36646 -32.44198 -31.90319 -28.92725 -27.52468 -24.83431 -24.21817 -23.22209 -22.11223 -21.34147 -20.71390 -19.01931 -18.78535 -17.58915 -17.49687 -17.40111 -16.97476 -16.53245 -16.45254 -16.23747 -15.72685 -15.14096 -14.87845 -14.68702 -14.40290 -14.10322 -14.03534 -13.74293 -13.39280 -13.22666 -12.97195 -12.77437 -12.59159 -12.47074 -12.42419 -12.20643 -11.91315 -11.87854 -11.69708 -11.60690 -11.34092 -11.31243 -10.65331 -10.55503 -10.00515 -9.42969 -8.17329 -6.31423 1.26697 1.42327 1.46941 1.54606 1.74639 1.96251 2.26247 2.45629 2.90952 3.15318 3.67649 3.84098 3.98047 4.09593 4.12350 4.25644 4.30444 4.38102 4.44691 4.49253 4.52085 4.57288 4.62869 4.66726 4.85324 4.90816 4.98955 5.09767 5.14947 5.27937 5.49104 5.59954 5.64603 5.68154 5.86375 5.87989 5.94466 6.18713 6.65801 6.86976 7.07276 7.37767 7.39863 8.95089 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.060707 B = 0.002475 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.120511 B =11312.471739 C =11540.061915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.043 3.957 10 C -0.121 4.121 11 C 0.513 3.487 12 O -0.588 6.588 13 N -0.716 5.716 14 C 0.141 3.859 15 C -0.110 4.110 16 C 0.057 3.943 17 N -0.538 5.538 18 C 0.060 3.940 19 C 0.482 3.518 20 O -0.534 6.534 21 O -0.516 6.516 22 C 0.068 3.932 23 C -0.123 4.123 24 H 0.263 0.737 25 H -0.018 1.018 26 H -0.019 1.019 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.415 0.585 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.095 0.905 37 H 0.428 0.572 38 H 0.101 0.899 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 -28.366 -1.343 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.093 0.907 9 C 0.006 3.994 10 C -0.160 4.160 11 C 0.301 3.699 12 O -0.467 6.467 13 N -0.368 5.368 14 C 0.037 3.963 15 C -0.148 4.148 16 C -0.071 4.071 17 N -0.264 5.264 18 C -0.069 4.069 19 C 0.325 3.675 20 O -0.423 6.423 21 O -0.330 6.330 22 C -0.059 4.059 23 C -0.162 4.162 24 H 0.071 0.929 25 H 0.001 0.999 26 H 0.000 1.000 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.252 0.748 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.159 0.841 36 H 0.113 0.887 37 H 0.290 0.710 38 H 0.119 0.881 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.639 -27.917 -1.646 28.347 hybrid contribution 0.050 0.658 0.637 0.918 sum 4.689 -27.259 -1.009 27.677 Atomic orbital electron populations 1.70169 1.08285 1.27863 1.51431 1.26148 0.95751 1.03963 0.94653 0.85368 0.78046 0.77325 0.79464 1.18707 1.21319 1.18711 1.21698 0.93988 0.91684 1.50854 0.90664 1.18672 0.93687 0.92438 0.94645 1.21641 0.99334 0.90318 1.04730 1.21292 0.87842 0.86731 0.74000 1.90645 1.16567 1.88361 1.51155 1.45993 1.10858 1.04543 1.75398 1.21030 0.95531 0.82930 0.96833 1.21735 0.99011 0.92277 1.01757 1.22126 0.99335 0.97475 0.88150 1.61558 1.45141 1.00848 1.18840 1.21652 0.93298 0.85615 1.06293 1.23539 0.88629 0.82921 0.72461 1.90727 1.22967 1.81835 1.46816 1.84472 1.47948 1.18595 1.81937 1.22017 0.93094 0.89815 1.00974 1.21904 1.01470 0.96191 0.96621 0.92854 0.99945 1.00010 0.87908 0.87891 0.74821 0.92241 0.90010 0.89885 0.94106 0.89725 0.84098 0.88739 0.71035 0.88119 0.93997 0.92971 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.96 13.29 21.45 0.28 -59.68 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 3 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.04 2.44 4.26 29.85 0.13 2.56 16 10 C -0.12 -4.89 5.64 29.85 0.17 -4.72 16 11 C 0.51 19.95 7.80 87.66 0.68 20.63 16 12 O -0.59 -28.81 15.65 -3.06 -0.05 -28.86 16 13 N -0.72 -19.58 5.08 -442.14 -2.25 -21.82 16 14 C 0.14 3.49 2.52 45.07 0.11 3.60 16 15 C -0.11 -2.05 5.57 30.64 0.17 -1.88 16 16 C 0.06 1.00 5.12 86.32 0.44 1.44 16 17 N -0.54 -8.80 4.35 -900.96 -3.92 -12.71 16 18 C 0.06 0.66 5.56 85.56 0.48 1.14 16 19 C 0.48 6.72 7.86 71.24 0.56 7.28 16 20 O -0.53 -11.47 15.47 21.96 0.34 -11.13 16 21 O -0.52 -4.50 13.42 -51.36 -0.69 -5.19 16 22 C 0.07 1.16 5.46 86.33 0.47 1.63 16 23 C -0.12 -2.81 5.68 30.65 0.17 -2.64 16 24 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 25 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 26 H -0.02 -1.18 8.10 -2.38 -0.02 -1.20 16 27 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 28 H 0.10 3.69 8.14 -2.38 -0.02 3.67 16 29 H 0.41 8.53 8.60 -92.71 -0.80 7.73 16 30 H 0.06 1.78 7.58 -2.39 -0.02 1.76 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 1.56 6.06 -2.39 -0.01 1.55 16 35 H 0.14 0.95 7.98 -2.39 -0.02 0.93 16 36 H 0.09 0.76 8.12 -2.39 -0.02 0.74 16 37 H 0.43 0.55 9.10 -74.06 -0.67 -0.12 16 38 H 0.10 1.33 8.01 -2.39 -0.02 1.31 16 39 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -82.63 340.97 -0.60 -83.22 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -0.43 Total: 11.55 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 4.08 Total: -2.05 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -5.88 Total: -94.21 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.40 Total: -45.17 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -82.63 -0.60 -83.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.087 kcal (2) G-P(sol) polarization free energy of solvation -82.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds