Wall clock time and date at job start Tue Mar 31 2020 05:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46981 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.46794 * 149.99743 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36931 * 120.00220 * 343.08678 * 7 2 1 10 10 C 1.46925 * 120.63201 * 151.82683 * 9 7 2 11 11 C 1.53198 * 108.89335 * 126.29969 * 10 9 7 12 12 C 1.53350 * 109.14641 * 54.57862 * 11 10 9 13 13 C 1.53000 * 109.41773 * 178.67869 * 12 11 10 14 14 N 1.46501 * 109.46914 * 295.12314 * 13 12 11 15 15 C 1.34778 * 120.00231 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00266 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.46949 * 179.97438 * 17 15 14 19 19 C 1.50710 * 109.46835 * 179.97438 * 18 17 15 20 20 O 1.20824 * 120.00034 * 0.02562 * 19 18 17 21 21 O 1.34225 * 120.00054 * 180.02562 * 19 18 17 22 22 C 1.53044 * 109.60893 * 298.71132 * 12 11 10 23 23 C 1.46925 * 120.62943 * 331.81086 * 9 7 2 24 24 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.58983 * 246.15688 * 10 9 7 26 26 H 1.08993 * 109.58892 * 6.44125 * 10 9 7 27 27 H 1.08996 * 109.49640 * 174.65737 * 11 10 9 28 28 H 1.09000 * 109.49939 * 294.75884 * 11 10 9 29 29 H 1.08997 * 109.42600 * 58.75344 * 12 11 10 30 30 H 1.09000 * 109.47417 * 55.12332 * 13 12 11 31 31 H 1.08998 * 109.47314 * 175.12869 * 13 12 11 32 32 H 0.97000 * 120.00186 * 0.02562 * 14 13 12 33 33 H 1.09000 * 109.47125 * 299.99731 * 17 15 14 34 34 H 1.08998 * 109.47103 * 59.99850 * 17 15 14 35 35 H 1.09000 * 109.47417 * 299.99475 * 18 17 15 36 36 H 1.08998 * 109.47314 * 60.00012 * 18 17 15 37 37 H 0.96698 * 117.00257 * 179.97438 * 21 19 18 38 38 H 1.08996 * 109.49900 * 301.42445 * 22 12 11 39 39 H 1.08999 * 109.52516 * 181.34285 * 22 12 11 40 40 H 1.08998 * 109.58495 * 353.41108 * 23 9 7 41 41 H 1.09000 * 109.58924 * 113.69864 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3460 10 6 1.8140 -3.6529 -0.1980 11 6 2.0708 -4.6187 0.9632 12 6 0.8133 -4.7005 1.8369 13 6 1.0517 -5.6889 2.9802 14 7 1.2348 -7.0350 2.4318 15 6 1.4609 -8.0748 3.2590 16 8 1.5123 -7.8961 4.4575 17 6 1.6498 -9.4593 2.6949 18 6 1.8894 -10.4475 3.8381 19 6 2.0777 -11.8323 3.2739 20 8 2.0261 -12.0103 2.0800 21 8 2.3028 -12.8677 4.0978 22 6 0.4985 -3.3188 2.4148 23 6 0.2264 -2.3401 1.2681 24 1 -0.4849 0.8400 0.0004 25 1 1.0402 -4.0609 -0.8482 26 1 2.7330 -3.5129 -0.7669 27 1 2.3089 -5.6065 0.5688 28 1 2.9059 -4.2543 1.5615 29 1 -0.0270 -5.0411 1.2318 30 1 1.9449 -5.3970 3.5325 31 1 0.1921 -5.6835 3.6504 32 1 1.1940 -7.1779 1.4732 33 1 0.7567 -9.7516 2.1426 34 1 2.5093 -9.4644 2.0246 35 1 2.7827 -10.1551 4.3899 36 1 1.0302 -10.4425 4.5087 37 1 2.4169 -13.7369 3.6895 38 1 1.3483 -2.9669 2.9996 39 1 -0.3816 -3.3834 3.0546 40 1 0.0994 -1.3343 1.6686 41 1 -0.6773 -2.6386 0.7368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609526.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:01 Heat of formation + Delta-G solvation = -128.715296 kcal Electronic energy + Delta-G solvation = -22107.112141 eV Core-core repulsion = 18600.718845 eV Total energy + Delta-G solvation = -3506.393297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.72257 -39.75219 -37.85479 -36.57370 -35.03279 -33.38946 -32.80803 -30.81521 -29.75859 -27.60346 -25.89776 -23.88043 -22.30798 -21.67405 -20.99808 -20.28214 -19.12984 -18.58189 -17.54025 -16.77717 -16.71352 -16.04706 -15.86545 -15.53220 -14.83020 -14.29761 -13.94494 -13.71385 -13.53768 -13.41022 -13.31557 -13.08015 -12.49702 -12.33865 -12.29483 -11.97053 -11.87798 -11.60949 -11.35275 -11.01053 -10.97608 -10.71772 -10.53034 -10.27514 -10.23896 -10.07411 -9.88337 -9.56680 -9.45084 -9.04667 -8.47604 -6.67608 -5.79905 -3.22184 1.81340 2.51849 2.52481 3.28849 3.36773 3.43994 3.46478 4.23228 4.49087 4.63845 4.70793 4.97218 5.09764 5.19052 5.22253 5.35640 5.37654 5.40385 5.50176 5.58924 5.83693 5.90950 6.02123 6.09667 6.12204 6.30393 6.38981 6.44086 6.58512 6.66849 6.74582 6.79664 6.96429 7.35021 7.43609 7.48811 7.64812 7.78749 8.11669 8.44664 9.20826 9.84381 10.41022 11.28700 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.047767 B = 0.002576 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.034498 B =10867.635749 C =11068.065492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.127 4.127 12 C -0.090 4.090 13 C 0.122 3.878 14 N -0.722 5.722 15 C 0.512 3.488 16 O -0.547 6.547 17 C -0.132 4.132 18 C -0.098 4.098 19 C 0.480 3.520 20 O -0.518 6.518 21 O -0.517 6.517 22 C -0.133 4.133 23 C 0.171 3.829 24 H 0.254 0.746 25 H 0.016 0.984 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.402 0.598 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.411 0.589 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.088 0.912 41 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 -21.057 6.310 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.167 4.167 12 C -0.109 4.109 13 C -0.001 4.001 14 N -0.374 5.374 15 C 0.298 3.702 16 O -0.425 6.425 17 C -0.172 4.172 18 C -0.136 4.136 19 C 0.323 3.677 20 O -0.407 6.407 21 O -0.329 6.329 22 C -0.172 4.172 23 C 0.045 3.955 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.237 0.763 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.269 0.731 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.065 -20.405 7.013 21.675 hybrid contribution 0.434 0.205 -0.817 0.947 sum 2.499 -20.200 6.196 21.276 Atomic orbital electron populations 1.70026 1.05266 1.25504 1.53975 1.25047 0.95289 0.98423 1.00939 0.86315 0.79184 0.83677 0.77701 1.21413 1.21550 1.20499 1.19167 0.92508 0.84858 1.41638 0.91792 1.44046 1.35926 1.01505 1.50049 1.20885 0.97525 0.87048 0.92712 1.22133 0.96971 0.98735 0.98829 1.21373 0.98770 0.95407 0.95394 1.21606 1.01553 0.80159 0.96742 1.46099 1.72506 1.08204 1.10554 1.20429 0.76467 0.86439 0.86910 1.90719 1.51001 1.85658 1.15129 1.21451 1.05812 0.91416 0.98558 1.21034 1.07031 0.86306 0.99245 1.23545 0.71713 0.87649 0.84779 1.90743 1.47003 1.85710 1.17194 1.84543 1.83469 1.20448 1.44393 1.22171 1.00357 0.94632 1.00070 1.20766 0.88614 0.98180 0.87904 0.93639 0.96611 0.92916 0.93405 0.92180 0.91287 0.91544 0.91738 0.76285 0.87857 0.87819 0.86673 0.86705 0.73059 0.92389 0.93054 0.89419 0.96427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 11.20 55.49 0.62 -25.38 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 8 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.51 2.99 -172.32 -0.52 -15.03 16 10 C 0.14 2.90 6.50 -3.71 -0.02 2.88 16 11 C -0.13 -2.03 5.27 -26.45 -0.14 -2.16 16 12 C -0.09 -1.37 2.19 -90.42 -0.20 -1.57 16 13 C 0.12 1.64 5.07 -4.04 -0.02 1.62 16 14 N -0.72 -8.01 5.27 -60.29 -0.32 -8.33 16 15 C 0.51 5.80 7.83 -10.99 -0.09 5.71 16 16 O -0.55 -8.14 15.98 5.56 0.09 -8.06 16 17 C -0.13 -1.07 4.99 -27.88 -0.14 -1.21 16 18 C -0.10 -0.74 5.10 -27.88 -0.14 -0.89 16 19 C 0.48 3.86 8.33 36.01 0.30 4.16 16 20 O -0.52 -5.62 16.74 -18.75 -0.31 -5.93 16 21 O -0.52 -3.14 13.42 -39.25 -0.53 -3.67 16 22 C -0.13 -2.40 5.36 -26.61 -0.14 -2.54 16 23 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 24 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 27 H 0.05 0.62 7.16 -51.93 -0.37 0.25 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.40 3.66 7.65 -40.82 -0.31 3.35 16 33 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.10 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.12 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.11 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.41 0.80 9.10 45.56 0.41 1.22 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -33.54 338.60 -7.34 -40.88 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.61 Total: 0.98 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.84 Total: 2.91 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.21 Total: -48.74 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.75 Total: -17.66 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.54 -7.34 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609526.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.836 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds