Wall clock time and date at job start Tue Mar 31 2020 05:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46981 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.46794 * 149.99743 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36931 * 120.00220 * 343.08678 * 7 2 1 10 10 C 1.46925 * 120.63201 * 151.82683 * 9 7 2 11 11 C 1.53198 * 108.89335 * 126.29969 * 10 9 7 12 12 C 1.53350 * 109.14641 * 54.57862 * 11 10 9 13 13 C 1.53000 * 109.41773 * 178.67869 * 12 11 10 14 14 N 1.46501 * 109.46914 * 295.12314 * 13 12 11 15 15 C 1.34778 * 120.00231 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00266 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.46949 * 179.97438 * 17 15 14 19 19 C 1.50710 * 109.46835 * 179.97438 * 18 17 15 20 20 O 1.20824 * 120.00034 * 0.02562 * 19 18 17 21 21 O 1.34225 * 120.00054 * 180.02562 * 19 18 17 22 22 C 1.53044 * 109.60893 * 298.71132 * 12 11 10 23 23 C 1.46925 * 120.62943 * 331.81086 * 9 7 2 24 24 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.58983 * 246.15688 * 10 9 7 26 26 H 1.08993 * 109.58892 * 6.44125 * 10 9 7 27 27 H 1.08996 * 109.49640 * 174.65737 * 11 10 9 28 28 H 1.09000 * 109.49939 * 294.75884 * 11 10 9 29 29 H 1.08997 * 109.42600 * 58.75344 * 12 11 10 30 30 H 1.09000 * 109.47417 * 55.12332 * 13 12 11 31 31 H 1.08998 * 109.47314 * 175.12869 * 13 12 11 32 32 H 0.97000 * 120.00186 * 0.02562 * 14 13 12 33 33 H 1.09000 * 109.47125 * 299.99731 * 17 15 14 34 34 H 1.08998 * 109.47103 * 59.99850 * 17 15 14 35 35 H 1.09000 * 109.47417 * 299.99475 * 18 17 15 36 36 H 1.08998 * 109.47314 * 60.00012 * 18 17 15 37 37 H 0.96698 * 117.00257 * 179.97438 * 21 19 18 38 38 H 1.08996 * 109.49900 * 301.42445 * 22 12 11 39 39 H 1.08999 * 109.52516 * 181.34285 * 22 12 11 40 40 H 1.08998 * 109.58495 * 353.41108 * 23 9 7 41 41 H 1.09000 * 109.58924 * 113.69864 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3460 10 6 1.8140 -3.6529 -0.1980 11 6 2.0708 -4.6187 0.9632 12 6 0.8133 -4.7005 1.8369 13 6 1.0517 -5.6889 2.9802 14 7 1.2348 -7.0350 2.4318 15 6 1.4609 -8.0748 3.2590 16 8 1.5123 -7.8961 4.4575 17 6 1.6498 -9.4593 2.6949 18 6 1.8894 -10.4475 3.8381 19 6 2.0777 -11.8323 3.2739 20 8 2.0261 -12.0103 2.0800 21 8 2.3028 -12.8677 4.0978 22 6 0.4985 -3.3188 2.4148 23 6 0.2264 -2.3401 1.2681 24 1 -0.4849 0.8400 0.0004 25 1 1.0402 -4.0609 -0.8482 26 1 2.7330 -3.5129 -0.7669 27 1 2.3089 -5.6065 0.5688 28 1 2.9059 -4.2543 1.5615 29 1 -0.0270 -5.0411 1.2318 30 1 1.9449 -5.3970 3.5325 31 1 0.1921 -5.6835 3.6504 32 1 1.1940 -7.1779 1.4732 33 1 0.7567 -9.7516 2.1426 34 1 2.5093 -9.4644 2.0246 35 1 2.7827 -10.1551 4.3899 36 1 1.0302 -10.4425 4.5087 37 1 2.4169 -13.7369 3.6895 38 1 1.3483 -2.9669 2.9996 39 1 -0.3816 -3.3834 3.0546 40 1 0.0994 -1.3343 1.6686 41 1 -0.6773 -2.6386 0.7368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609526.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:01 Heat of formation + Delta-G solvation = -152.538435 kcal Electronic energy + Delta-G solvation = -22108.145190 eV Core-core repulsion = 18600.718845 eV Total energy + Delta-G solvation = -3507.426346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.38299 -40.66882 -39.31579 -37.14890 -36.40659 -34.48373 -33.99668 -32.48649 -31.39200 -28.84248 -27.07280 -25.43329 -23.82310 -22.78098 -22.13747 -21.19659 -20.59285 -19.23657 -18.69501 -18.19253 -17.38660 -17.01342 -16.80585 -16.66751 -16.36868 -15.70653 -15.30639 -15.21734 -14.81296 -14.64137 -14.19651 -14.17657 -13.89823 -13.77451 -13.35015 -13.04136 -12.98088 -12.79591 -12.54980 -12.52628 -12.26209 -12.22774 -12.01341 -11.83340 -11.64645 -11.59344 -11.25888 -11.08704 -10.87692 -10.52427 -10.03851 -8.65809 -7.87000 -5.31705 1.21687 1.45861 1.47797 1.57188 1.65228 1.91260 2.51186 2.51846 3.27665 3.60183 3.72666 3.85748 3.94673 4.01721 4.07722 4.12936 4.44559 4.53959 4.55918 4.65288 4.71372 4.75284 4.80703 4.85376 4.93176 4.95636 5.03702 5.16271 5.30404 5.32416 5.40870 5.49236 5.56682 5.64314 5.66882 5.80596 6.40692 6.57760 7.01097 7.16562 7.26048 7.89194 8.39587 9.19138 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.047767 B = 0.002576 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.034498 B =10867.635749 C =11068.065492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.613 5.613 10 C 0.138 3.862 11 C -0.114 4.114 12 C -0.079 4.079 13 C 0.136 3.864 14 N -0.716 5.716 15 C 0.514 3.486 16 O -0.584 6.584 17 C -0.123 4.123 18 C -0.098 4.098 19 C 0.490 3.510 20 O -0.549 6.549 21 O -0.515 6.515 22 C -0.122 4.122 23 C 0.176 3.824 24 H 0.249 0.751 25 H 0.018 0.982 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.415 0.585 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.429 0.571 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.050 0.950 41 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.029 -23.020 6.560 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.248 4.248 3 Si 0.793 3.207 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.336 5.336 10 C 0.013 3.987 11 C -0.153 4.153 12 C -0.098 4.098 13 C 0.012 3.988 14 N -0.368 5.368 15 C 0.301 3.699 16 O -0.465 6.465 17 C -0.163 4.163 18 C -0.136 4.136 19 C 0.334 3.666 20 O -0.440 6.440 21 O -0.329 6.329 22 C -0.161 4.161 23 C 0.051 3.949 24 H 0.059 0.941 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.252 0.748 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.291 0.709 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 2.912 -22.424 7.249 23.746 hybrid contribution 0.181 0.741 -0.904 1.183 sum 3.093 -21.683 6.345 22.803 Atomic orbital electron populations 1.70175 1.06606 1.25788 1.55537 1.25783 0.96051 1.01457 1.01460 0.85323 0.78082 0.79754 0.77576 1.21105 1.21893 1.19687 1.19489 0.92756 0.86225 1.40722 0.91821 1.44335 1.36012 1.02436 1.50859 1.21081 0.97209 0.86030 0.94357 1.21986 0.96837 0.99384 0.97099 1.21206 0.98696 0.94042 0.95839 1.21258 1.01068 0.80865 0.95615 1.45982 1.72263 1.07257 1.11296 1.20927 0.75247 0.87378 0.86310 1.90710 1.52623 1.86287 1.16835 1.21410 1.06929 0.89179 0.98740 1.21024 1.07304 0.86135 0.99115 1.23495 0.70804 0.88027 0.84245 1.90738 1.48639 1.86210 1.18383 1.84504 1.82838 1.21314 1.44210 1.21969 1.00870 0.95140 0.98169 1.20575 0.87798 0.97544 0.89011 0.94148 0.96451 0.93149 0.89512 0.93149 0.90505 0.92518 0.91881 0.74810 0.86545 0.86607 0.86475 0.86406 0.70941 0.93171 0.91256 0.93163 0.98371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 11.20 21.65 0.24 -55.13 16 2 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 3 Si 0.96 44.99 29.59 68.60 2.03 47.02 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.26 -14.38 9.58 84.03 0.81 -13.58 16 8 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 9 N -0.61 -30.29 2.99 -699.09 -2.09 -32.38 16 10 C 0.14 5.41 6.50 86.36 0.56 5.98 16 11 C -0.11 -3.36 5.27 30.78 0.16 -3.20 16 12 C -0.08 -2.23 2.19 -10.66 -0.02 -2.25 16 13 C 0.14 3.33 5.07 86.38 0.44 3.76 16 14 N -0.72 -13.76 5.27 -463.06 -2.44 -16.20 16 15 C 0.51 10.37 7.83 87.66 0.69 11.06 16 16 O -0.58 -16.39 15.98 -3.04 -0.05 -16.43 16 17 C -0.12 -1.64 4.99 29.85 0.15 -1.50 16 18 C -0.10 -1.27 5.10 29.85 0.15 -1.12 16 19 C 0.49 6.83 8.33 71.24 0.59 7.42 16 20 O -0.55 -10.80 16.74 21.97 0.37 -10.43 16 21 O -0.51 -5.10 13.42 -51.37 -0.69 -5.79 16 22 C -0.12 -4.33 5.36 30.68 0.16 -4.17 16 23 C 0.18 8.34 5.30 86.36 0.46 8.80 16 24 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 25 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 27 H 0.09 1.91 7.16 -2.39 -0.02 1.89 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.41 5.97 7.65 -92.71 -0.71 5.26 16 33 H 0.12 1.31 8.10 -2.39 -0.02 1.29 16 34 H 0.12 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.12 1.50 8.10 -2.39 -0.02 1.48 16 36 H 0.12 1.48 8.10 -2.39 -0.02 1.46 16 37 H 0.43 0.70 9.10 -74.06 -0.67 0.03 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 2.73 6.06 -2.39 -0.01 2.72 16 41 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: -1.00 -73.34 338.60 1.59 -71.75 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -0.34 Total: 8.89 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 4.56 Total: 8.69 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -4.29 Total: -103.71 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.37 Total: -32.65 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -73.34 1.59 -71.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609526.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.785 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds