Wall clock time and date at job start Tue Mar 31 2020 05:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46504 * 109.43848 * 181.23616 * 12 11 10 14 14 C 1.34779 * 119.99730 * 84.79387 * 13 12 11 15 15 O 1.21283 * 120.00380 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99711 * 179.97438 * 14 13 12 17 17 C 1.53005 * 109.47064 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46900 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.46712 * 179.97438 * 18 17 16 20 20 O 1.20827 * 120.00471 * 0.02562 * 19 18 17 21 21 O 1.34226 * 119.99865 * 180.02562 * 19 18 17 22 22 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 23 23 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 24 24 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 26 26 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 27 27 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 28 28 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 29 29 H 1.08998 * 109.34625 * 301.12703 * 12 11 10 30 30 H 0.96998 * 120.00207 * 264.79594 * 13 12 11 31 31 H 1.09006 * 109.46878 * 300.00127 * 16 14 13 32 32 H 1.09000 * 109.47347 * 60.00369 * 16 14 13 33 33 H 1.09006 * 109.46477 * 299.99774 * 17 16 14 34 34 H 1.09000 * 109.47147 * 59.99744 * 17 16 14 35 35 H 1.08997 * 109.46964 * 299.99703 * 18 17 16 36 36 H 1.09001 * 109.47128 * 59.99521 * 18 17 16 37 37 H 0.96700 * 117.00341 * 180.02562 * 21 19 18 38 38 H 1.09002 * 109.49848 * 178.74812 * 22 12 11 39 39 H 1.09002 * 109.52425 * 58.66284 * 22 12 11 40 40 H 1.09004 * 109.59094 * 246.19900 * 23 9 7 41 41 H 1.09001 * 109.59077 * 6.49172 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1710 -2.6584 -3.1401 14 6 7.2000 -2.0803 -3.7908 15 8 7.5950 -0.9856 -3.4496 16 6 7.8605 -2.7947 -4.9417 17 6 8.9912 -1.9275 -5.4990 18 6 9.6613 -2.6526 -6.6678 19 6 10.7745 -1.7982 -7.2171 20 8 11.0083 -0.7201 -6.7240 21 8 11.5064 -2.2347 -8.2541 22 6 4.8755 -2.9898 -1.0921 23 6 4.2351 -2.2628 0.0946 24 1 -0.4850 0.8401 0.0004 25 1 2.9908 0.3501 -1.7559 26 1 4.5579 0.3822 -0.9097 27 1 3.7035 -1.5726 -3.0945 28 1 4.9277 -0.2876 -3.2372 29 1 6.2783 -1.3982 -1.4672 30 1 5.8553 -3.5341 -3.4128 31 1 8.2686 -3.7439 -4.5940 32 1 7.1250 -2.9803 -5.7244 33 1 8.5833 -0.9782 -5.8465 34 1 9.7266 -1.7422 -4.7161 35 1 10.0689 -3.6020 -6.3207 36 1 8.9256 -2.8376 -7.4505 37 1 12.2097 -1.6518 -8.5714 38 1 5.6320 -3.6849 -0.7278 39 1 4.1092 -3.5397 -1.6385 40 1 5.0116 -1.7874 0.6940 41 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610204.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:37 Heat of formation + Delta-G solvation = -150.984284 kcal Electronic energy + Delta-G solvation = -22290.521111 eV Core-core repulsion = 18783.162158 eV Total energy + Delta-G solvation = -3507.358953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.28850 -40.91176 -39.20224 -37.17524 -36.10938 -35.30420 -34.05653 -32.00583 -31.93786 -29.77839 -26.85803 -24.76065 -24.41711 -23.33568 -21.65555 -21.40121 -20.89695 -19.04474 -18.87738 -18.08080 -17.57326 -17.34647 -17.20747 -16.57091 -16.39694 -15.96384 -15.36337 -15.24726 -15.02421 -14.62023 -14.49045 -14.14561 -14.04458 -13.88581 -13.48127 -13.07735 -12.97067 -12.68834 -12.56978 -12.50996 -12.43901 -12.23121 -12.05319 -11.77181 -11.73530 -11.63249 -11.49601 -11.44843 -10.88612 -10.69119 -9.98390 -8.98224 -8.19193 -5.50002 1.26027 1.26688 1.37481 1.45705 1.74145 2.06794 2.38285 2.41800 3.02552 3.32163 3.68765 3.81958 3.94038 4.02802 4.06222 4.17556 4.24122 4.30874 4.45542 4.60471 4.65124 4.67813 4.70767 4.74387 4.80366 4.90414 4.95891 5.03009 5.08636 5.13912 5.15682 5.34650 5.43795 5.58618 5.67892 5.85520 6.11447 6.68915 6.88877 7.02357 7.39464 7.59700 8.01372 9.00377 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033967 B = 0.002949 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.139702 B = 9493.129813 C = 9957.843195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.031 4.031 3 Si 0.936 3.064 4 H -0.282 1.282 5 H -0.309 1.309 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.063 0.937 9 N -0.619 5.619 10 C 0.124 3.876 11 C -0.129 4.129 12 C 0.157 3.843 13 N -0.711 5.711 14 C 0.500 3.500 15 O -0.595 6.595 16 C -0.126 4.126 17 C -0.095 4.095 18 C -0.105 4.105 19 C 0.476 3.524 20 O -0.565 6.565 21 O -0.514 6.514 22 C -0.123 4.123 23 C 0.141 3.859 24 H 0.261 0.739 25 H 0.049 0.951 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.418 0.582 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.425 0.575 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.172 -13.189 -16.116 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.226 4.226 3 Si 0.766 3.234 4 H -0.209 1.209 5 H -0.237 1.237 6 H -0.192 1.192 7 C -0.372 4.372 8 H 0.081 0.919 9 N -0.344 5.344 10 C -0.001 4.001 11 C -0.169 4.169 12 C 0.052 3.948 13 N -0.363 5.363 14 C 0.289 3.711 15 O -0.476 6.476 16 C -0.165 4.165 17 C -0.133 4.133 18 C -0.142 4.142 19 C 0.321 3.679 20 O -0.456 6.456 21 O -0.327 6.327 22 C -0.162 4.162 23 C 0.016 3.984 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.255 0.745 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.286 0.714 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.087 -12.335 -15.588 28.979 hybrid contribution 0.163 1.706 0.047 1.715 sum 21.249 -10.629 -15.541 28.391 Atomic orbital electron populations 1.69939 1.07065 1.27060 1.55849 1.25810 0.95757 1.00401 1.00636 0.86078 0.78741 0.81331 0.77227 1.20902 1.23733 1.19209 1.18918 0.86552 0.93670 1.38100 0.91903 1.44542 1.08038 1.34556 1.47278 1.21262 0.96332 0.92155 0.90379 1.22214 0.98210 0.98936 0.97576 1.20641 0.93139 0.93567 0.87441 1.46038 1.33921 1.22690 1.33670 1.21582 0.79441 0.85762 0.84318 1.90730 1.65262 1.23274 1.68289 1.21684 0.98698 1.00319 0.95841 1.21072 0.97132 0.98247 0.96893 1.21454 0.94382 0.99164 0.99165 1.24143 0.82224 0.85106 0.76449 1.90771 1.69419 1.25357 1.60074 1.84501 1.47718 1.53366 1.47148 1.22128 1.00268 0.97227 0.96594 1.21128 0.91929 0.90670 0.94650 0.92963 0.93284 0.96076 0.91447 0.92769 0.92030 0.74466 0.84718 0.85305 0.93431 0.92995 0.84134 0.84454 0.71407 0.88387 0.90729 0.95198 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.07 13.97 21.65 0.30 -59.77 16 2 C -0.03 -1.83 5.23 84.86 0.44 -1.39 16 3 Si 0.94 48.40 24.34 68.60 1.67 50.07 16 4 H -0.28 -14.10 6.62 99.48 0.66 -13.44 16 5 H -0.31 -16.07 7.11 99.48 0.71 -15.37 16 6 H -0.27 -13.50 6.64 99.48 0.66 -12.84 16 7 C -0.24 -13.65 10.03 84.03 0.84 -12.81 16 8 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 9 N -0.62 -29.04 2.77 -699.09 -1.94 -30.98 16 10 C 0.12 5.58 4.20 86.36 0.36 5.94 16 11 C -0.13 -4.65 5.66 30.68 0.17 -4.48 16 12 C 0.16 4.64 2.41 45.03 0.11 4.75 16 13 N -0.71 -14.83 5.08 -442.34 -2.25 -17.07 16 14 C 0.50 11.58 7.79 87.66 0.68 12.27 16 15 O -0.60 -20.90 15.64 -3.04 -0.05 -20.95 16 16 C -0.13 -1.39 5.70 29.85 0.17 -1.22 16 17 C -0.10 -1.54 3.79 30.60 0.12 -1.42 16 18 C -0.10 -0.84 5.81 29.85 0.17 -0.67 16 19 C 0.48 7.16 8.33 71.24 0.59 7.76 16 20 O -0.56 -14.41 16.74 21.96 0.37 -14.04 16 21 O -0.51 -4.87 13.42 -51.38 -0.69 -5.56 16 22 C -0.12 -3.30 5.55 30.67 0.17 -3.13 16 23 C 0.14 5.14 6.52 86.37 0.56 5.70 16 24 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.05 2.43 4.49 -2.39 -0.01 2.42 16 26 H 0.02 0.97 7.07 -2.38 -0.02 0.96 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 2.12 7.58 -2.39 -0.02 2.10 16 30 H 0.42 5.34 8.60 -92.71 -0.80 4.54 16 31 H 0.13 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 1.08 8.06 -2.38 -0.02 1.06 16 34 H 0.05 1.13 8.06 -2.39 -0.02 1.11 16 35 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.42 1.16 9.10 -74.06 -0.67 0.49 16 38 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 Total: -1.00 -85.06 333.89 1.30 -83.76 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -0.52 Total: 3.25 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 4.40 Total: 11.30 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -3.88 Total: -107.82 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -0.37 Total: -40.55 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 1.67 Total: 50.07 kcal Total: -85.06 1.30 -83.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610204.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.226 kcal (2) G-P(sol) polarization free energy of solvation -85.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds