Wall clock time and date at job start Tue Mar 31 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00063 * 2 1 4 4 H 1.48502 * 109.47156 * 269.99739 * 3 2 1 5 5 H 1.48502 * 109.46945 * 30.00060 * 3 2 1 6 6 H 1.48504 * 109.46829 * 149.99923 * 3 2 1 7 7 C 1.38956 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99761 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99894 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99970 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00056 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47303 * 180.02562 * 12 10 9 14 14 C 1.46897 * 111.00298 * 171.61128 * 13 12 10 15 15 C 1.50708 * 108.76738 * 56.18881 * 14 13 12 16 16 O 1.20828 * 119.99646 * 131.77949 * 15 14 13 17 17 O 1.34228 * 120.00085 * 311.77413 * 15 14 13 18 18 C 1.50473 * 108.87486 * 297.68335 * 14 13 12 19 19 C 1.54242 * 108.52588 * 333.36415 * 18 14 13 20 20 C 1.45540 * 112.40383 * 280.02377 * 19 18 14 21 21 C 1.54242 * 112.40831 * 61.93667 * 20 19 18 22 22 C 1.50477 * 108.51585 * 280.00213 * 21 20 19 23 23 C 1.54060 * 108.87903 * 174.70090 * 14 13 12 24 24 H 0.97000 * 119.99889 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99926 * 0.02562 * 9 7 2 26 26 H 1.08995 * 109.47363 * 59.99545 * 12 10 9 27 27 H 1.09002 * 109.46641 * 299.99497 * 12 10 9 28 28 H 1.00900 * 110.99253 * 295.56400 * 13 12 10 29 29 H 0.96695 * 116.99425 * 179.97438 * 17 15 14 30 30 H 1.08996 * 109.63340 * 93.07935 * 18 14 13 31 31 H 1.09001 * 109.62206 * 213.65855 * 18 14 13 32 32 H 1.08999 * 108.89267 * 159.26590 * 19 18 14 33 33 H 1.09006 * 108.89319 * 40.77348 * 19 18 14 34 34 H 1.09003 * 108.89607 * 301.17911 * 20 19 18 35 35 H 1.09005 * 108.81472 * 182.63700 * 20 19 18 36 36 H 1.09002 * 109.62761 * 160.29722 * 21 20 19 37 37 H 1.08997 * 109.62987 * 39.71661 * 21 20 19 38 38 H 1.08994 * 108.87382 * 333.37809 * 22 21 20 39 39 H 1.08992 * 108.87323 * 214.93035 * 22 21 20 40 40 H 1.09005 * 108.81357 * 199.92060 * 23 14 13 41 41 H 1.08999 * 108.81821 * 318.31028 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1983 -5.9796 -0.0004 14 6 1.5091 -7.2614 0.1992 15 6 0.4553 -7.4164 -0.8670 16 8 0.3733 -8.4485 -1.4899 17 8 -0.3923 -6.4079 -1.1247 18 6 0.8399 -7.2496 1.5469 19 6 1.6137 -6.2861 2.4699 20 6 2.8166 -6.8923 3.0212 21 6 3.8283 -7.2912 1.9274 22 6 3.3894 -8.5980 1.3242 23 6 2.5321 -8.4046 0.0588 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6174 -4.9205 -0.8913 27 1 0.6168 -4.9209 0.8887 28 1 2.7428 -5.9902 -0.8498 29 1 -1.0507 -6.5541 -1.8175 30 1 -0.1897 -6.9079 1.4416 31 1 0.8539 -8.2535 1.9713 32 1 0.9627 -5.9841 3.2902 33 1 1.8943 -5.4004 1.8998 34 1 2.5368 -7.7824 3.5848 35 1 3.2903 -6.1810 3.6978 36 1 4.8184 -7.4058 2.3687 37 1 3.8552 -6.5222 1.1555 38 1 2.8083 -9.1499 2.0629 39 1 4.2730 -9.1815 1.0658 40 1 1.9972 -9.3316 -0.1485 41 1 3.1919 -8.1850 -0.7806 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:01 Heat of formation + Delta-G solvation = -112.768623 kcal Electronic energy + Delta-G solvation = -24160.004141 eV Core-core repulsion = 20654.302344 eV Total energy + Delta-G solvation = -3505.701797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.24929 -38.87420 -37.86787 -36.29869 -34.56065 -33.79463 -32.45252 -31.22365 -30.63946 -26.87732 -25.15317 -24.93366 -23.74419 -21.99815 -20.05795 -19.34025 -18.95886 -18.21009 -17.85149 -17.28136 -16.24635 -16.01496 -15.18641 -14.87024 -14.45664 -14.19842 -13.98505 -13.95776 -13.59337 -13.36693 -13.17757 -12.83038 -12.47105 -12.24916 -12.06474 -11.61646 -11.55820 -11.50928 -11.27950 -11.07547 -10.75306 -10.65146 -10.41916 -10.38431 -10.20385 -10.16474 -9.99115 -9.91053 -9.49003 -8.53006 -8.04731 -7.94640 -6.40625 -3.81204 2.10730 2.92441 3.18492 3.27085 3.32833 3.93969 4.00263 4.27698 4.49181 4.70924 4.96117 5.09171 5.20470 5.25788 5.27599 5.31850 5.38102 5.43229 5.58282 5.72046 5.88148 5.89754 6.02078 6.07166 6.12174 6.19233 6.22979 6.32937 6.42124 6.44897 6.48406 6.58780 6.78360 6.94524 7.09028 7.40852 7.56192 7.82597 8.07325 8.62709 9.19270 9.56283 10.07726 10.77053 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.004805 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.675598 B = 5825.949377 C = 6475.999972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.442 3.558 11 O -0.582 6.582 12 C 0.023 3.977 13 N -0.630 5.630 14 C 0.139 3.861 15 C 0.443 3.557 16 O -0.522 6.522 17 O -0.500 6.500 18 C -0.107 4.107 19 C -0.129 4.129 20 C -0.102 4.102 21 C -0.133 4.133 22 C -0.106 4.106 23 C -0.099 4.099 24 H 0.271 0.729 25 H 0.392 0.608 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.350 0.650 29 H 0.396 0.604 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 -14.766 2.140 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.108 4.108 13 N -0.263 5.263 14 C 0.046 3.954 15 C 0.283 3.717 16 O -0.408 6.408 17 O -0.312 6.312 18 C -0.144 4.144 19 C -0.166 4.166 20 C -0.139 4.139 21 C -0.170 4.170 22 C -0.143 4.143 23 C -0.137 4.137 24 H 0.081 0.919 25 H 0.225 0.775 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.170 0.830 29 H 0.255 0.745 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.221 -14.737 2.931 15.028 hybrid contribution -1.256 0.593 -1.397 1.970 sum -1.036 -14.144 1.535 14.265 Atomic orbital electron populations 1.69613 1.05914 1.28091 1.50693 1.25245 0.95608 0.99662 0.97396 0.85878 0.79266 0.80924 0.78337 1.20487 1.20970 1.19421 1.19693 0.93338 0.82243 1.47515 0.87952 1.41843 1.09209 1.04539 1.64429 1.19807 0.88336 0.84648 0.84462 1.90532 1.13671 1.87098 1.55365 1.22387 0.94343 0.90186 1.03912 1.60626 1.22993 0.99362 1.43285 1.20996 0.89303 0.92733 0.92394 1.25721 0.81403 0.80580 0.83991 1.90663 1.70816 1.29548 1.49818 1.84989 1.44921 1.43564 1.57761 1.21462 0.98792 1.01457 0.92736 1.20658 0.96286 1.01188 0.98477 1.20297 0.96267 0.99648 0.97722 1.21590 0.97057 0.98439 0.99948 1.21237 0.98521 0.98467 0.96094 1.21935 0.96190 0.96215 0.99373 0.91925 0.77461 0.90169 0.88470 0.82962 0.74460 0.91383 0.90837 0.93133 0.87196 0.93855 0.92687 0.93155 0.87236 0.92538 0.92298 0.90355 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 10 C 0.44 9.92 7.68 -10.99 -0.08 9.83 16 11 O -0.58 -15.00 15.95 5.54 0.09 -14.91 16 12 C 0.02 0.38 3.85 -4.98 -0.02 0.36 16 13 N -0.63 -9.24 1.89 -103.12 -0.20 -9.43 16 14 C 0.14 1.75 0.53 -133.46 -0.07 1.68 16 15 C 0.44 5.81 6.81 36.01 0.25 6.05 16 16 O -0.52 -7.93 16.28 -18.75 -0.31 -8.23 16 17 O -0.50 -5.72 9.50 -39.25 -0.37 -6.09 16 18 C -0.11 -1.26 4.26 -27.34 -0.12 -1.38 16 19 C -0.13 -1.70 4.46 -29.60 -0.13 -1.84 16 20 C -0.10 -1.27 5.26 -29.60 -0.16 -1.43 16 21 C -0.13 -1.67 5.61 -27.34 -0.15 -1.82 16 22 C -0.11 -1.14 5.31 -27.43 -0.15 -1.28 16 23 C -0.10 -1.15 4.63 -25.62 -0.12 -1.27 16 24 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 26 H 0.08 1.26 5.24 -51.86 -0.27 0.99 16 27 H 0.10 1.53 5.50 -51.93 -0.29 1.24 16 28 H 0.35 5.32 8.44 -39.29 -0.33 4.99 16 29 H 0.40 3.00 9.10 45.63 0.42 3.41 16 30 H 0.07 0.79 7.42 -51.93 -0.39 0.40 16 31 H 0.07 0.79 6.98 -51.93 -0.36 0.43 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.11 1.78 4.09 -51.93 -0.21 1.56 16 34 H 0.04 0.48 7.47 -51.93 -0.39 0.09 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.11 1.64 5.57 -51.93 -0.29 1.35 16 38 H 0.06 0.57 6.63 -51.93 -0.34 0.22 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.92 7.16 -51.93 -0.37 0.55 16 41 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 LS Contribution 313.81 15.07 4.73 4.73 Total: -1.00 -30.98 313.81 -6.16 -37.14 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -4.76 Total: 17.28 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.99 Total: 1.10 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.47 Total: -46.83 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.59 Total: -29.24 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.98 -6.16 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.625 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds