Wall clock time and date at job start Tue Mar 31 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86799 * 120.00063 * 2 1 4 4 H 1.48502 * 109.47156 * 269.99739 * 3 2 1 5 5 H 1.48502 * 109.46945 * 30.00060 * 3 2 1 6 6 H 1.48504 * 109.46829 * 149.99923 * 3 2 1 7 7 C 1.38956 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99761 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99894 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99970 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00056 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47303 * 180.02562 * 12 10 9 14 14 C 1.46897 * 111.00298 * 171.61128 * 13 12 10 15 15 C 1.50708 * 108.76738 * 56.18881 * 14 13 12 16 16 O 1.20828 * 119.99646 * 131.77949 * 15 14 13 17 17 O 1.34228 * 120.00085 * 311.77413 * 15 14 13 18 18 C 1.50473 * 108.87486 * 297.68335 * 14 13 12 19 19 C 1.54242 * 108.52588 * 333.36415 * 18 14 13 20 20 C 1.45540 * 112.40383 * 280.02377 * 19 18 14 21 21 C 1.54242 * 112.40831 * 61.93667 * 20 19 18 22 22 C 1.50477 * 108.51585 * 280.00213 * 21 20 19 23 23 C 1.54060 * 108.87903 * 174.70090 * 14 13 12 24 24 H 0.97000 * 119.99889 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99926 * 0.02562 * 9 7 2 26 26 H 1.08995 * 109.47363 * 59.99545 * 12 10 9 27 27 H 1.09002 * 109.46641 * 299.99497 * 12 10 9 28 28 H 1.00900 * 110.99253 * 295.56400 * 13 12 10 29 29 H 0.96695 * 116.99425 * 179.97438 * 17 15 14 30 30 H 1.08996 * 109.63340 * 93.07935 * 18 14 13 31 31 H 1.09001 * 109.62206 * 213.65855 * 18 14 13 32 32 H 1.08999 * 108.89267 * 159.26590 * 19 18 14 33 33 H 1.09006 * 108.89319 * 40.77348 * 19 18 14 34 34 H 1.09003 * 108.89607 * 301.17911 * 20 19 18 35 35 H 1.09005 * 108.81472 * 182.63700 * 20 19 18 36 36 H 1.09002 * 109.62761 * 160.29722 * 21 20 19 37 37 H 1.08997 * 109.62987 * 39.71661 * 21 20 19 38 38 H 1.08994 * 108.87382 * 333.37809 * 22 21 20 39 39 H 1.08992 * 108.87323 * 214.93035 * 22 21 20 40 40 H 1.09005 * 108.81357 * 199.92060 * 23 14 13 41 41 H 1.08999 * 108.81821 * 318.31028 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 7 2.1983 -5.9796 -0.0004 14 6 1.5091 -7.2614 0.1992 15 6 0.4553 -7.4164 -0.8670 16 8 0.3733 -8.4485 -1.4899 17 8 -0.3923 -6.4079 -1.1247 18 6 0.8399 -7.2496 1.5469 19 6 1.6137 -6.2861 2.4699 20 6 2.8166 -6.8923 3.0212 21 6 3.8283 -7.2912 1.9274 22 6 3.3894 -8.5980 1.3242 23 6 2.5321 -8.4046 0.0588 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6174 -4.9205 -0.8913 27 1 0.6168 -4.9209 0.8887 28 1 2.7428 -5.9902 -0.8498 29 1 -1.0507 -6.5541 -1.8175 30 1 -0.1897 -6.9079 1.4416 31 1 0.8539 -8.2535 1.9713 32 1 0.9627 -5.9841 3.2902 33 1 1.8943 -5.4004 1.8998 34 1 2.5368 -7.7824 3.5848 35 1 3.2903 -6.1810 3.6978 36 1 4.8184 -7.4058 2.3687 37 1 3.8552 -6.5222 1.1555 38 1 2.8083 -9.1499 2.0629 39 1 4.2730 -9.1815 1.0658 40 1 1.9972 -9.3316 -0.1485 41 1 3.1919 -8.1850 -0.7806 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:01 Heat of formation + Delta-G solvation = -134.448311 kcal Electronic energy + Delta-G solvation = -24160.944242 eV Core-core repulsion = 20654.302344 eV Total energy + Delta-G solvation = -3506.641899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.31234 -40.16991 -39.41489 -37.34126 -36.03480 -35.43101 -33.46675 -33.16161 -31.81260 -28.33662 -26.52640 -26.02593 -25.16237 -23.02741 -21.09184 -21.00516 -20.04357 -19.83587 -19.24943 -18.36009 -17.58023 -17.33884 -16.66344 -16.20932 -16.03488 -15.60607 -15.37178 -15.05196 -15.03119 -14.48942 -14.29230 -14.01793 -13.80371 -13.52227 -13.35180 -13.23649 -12.91803 -12.78690 -12.57502 -12.37387 -12.27983 -12.10928 -11.75915 -11.65749 -11.46380 -11.39695 -11.14253 -11.00064 -10.96942 -10.26658 -9.95379 -9.34072 -8.42362 -5.90176 1.06691 1.40038 1.43812 1.56090 1.96101 2.15083 2.31200 2.82202 3.25528 3.51609 3.58120 3.76748 3.98906 4.21223 4.26506 4.30404 4.41477 4.43367 4.44284 4.60678 4.64937 4.84040 4.88942 4.97162 5.02737 5.21354 5.24109 5.30797 5.44840 5.45120 5.50251 5.52317 5.57488 5.65655 5.81525 5.99728 6.08738 6.21033 6.65377 6.90275 7.18014 7.62908 8.18472 8.75027 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.004805 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.675598 B = 5825.949377 C = 6475.999972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.330 4.330 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.618 6.618 12 C 0.043 3.957 13 N -0.632 5.632 14 C 0.142 3.858 15 C 0.449 3.551 16 O -0.542 6.542 17 O -0.502 6.502 18 C -0.103 4.103 19 C -0.126 4.126 20 C -0.102 4.102 21 C -0.132 4.132 22 C -0.100 4.100 23 C -0.096 4.096 24 H 0.276 0.724 25 H 0.395 0.605 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.345 0.655 29 H 0.416 0.584 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 -15.786 2.455 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.230 3.770 11 O -0.504 6.504 12 C -0.087 4.087 13 N -0.265 5.265 14 C 0.049 3.951 15 C 0.290 3.710 16 O -0.431 6.431 17 O -0.316 6.316 18 C -0.141 4.141 19 C -0.164 4.164 20 C -0.140 4.140 21 C -0.170 4.170 22 C -0.137 4.137 23 C -0.134 4.134 24 H 0.086 0.914 25 H 0.229 0.771 26 H 0.112 0.888 27 H 0.128 0.872 28 H 0.165 0.835 29 H 0.278 0.722 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.507 -15.767 3.239 16.104 hybrid contribution -1.042 0.868 -1.502 2.023 sum -1.548 -14.899 1.738 15.079 Atomic orbital electron populations 1.69673 1.06762 1.29108 1.50664 1.25976 0.96482 1.02238 0.96520 0.84974 0.77927 0.77190 0.78529 1.19795 1.19727 1.19826 1.19644 0.92649 0.84045 1.49596 0.90337 1.41903 1.09271 1.04653 1.65382 1.20817 0.88194 0.85963 0.81977 1.90503 1.15643 1.87940 1.56321 1.22179 0.93861 0.87600 1.05108 1.60620 1.22874 0.99803 1.43155 1.21065 0.89503 0.91752 0.92795 1.25652 0.81380 0.80365 0.83609 1.90663 1.71460 1.30400 1.50561 1.84869 1.45228 1.43016 1.58506 1.21474 0.98611 1.02138 0.91851 1.20579 0.96892 1.00383 0.98501 1.20302 0.95854 1.00171 0.97638 1.21528 0.97438 0.98670 0.99323 1.21189 0.99090 0.97565 0.95872 1.21933 0.95965 0.95759 0.99759 0.91447 0.77100 0.88821 0.87183 0.83482 0.72172 0.90856 0.88917 0.92609 0.90340 0.91701 0.94003 0.92890 0.89901 0.91077 0.91073 0.89928 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.26 13.05 21.66 0.28 -48.97 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.33 -18.46 9.68 84.04 0.81 -17.64 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -28.82 5.29 -306.98 -1.62 -30.45 16 10 C 0.44 20.25 7.68 87.66 0.67 20.92 16 11 O -0.62 -32.82 15.95 -3.08 -0.05 -32.87 16 12 C 0.04 1.41 3.85 85.56 0.33 1.74 16 13 N -0.63 -18.24 1.89 -480.17 -0.91 -19.15 16 14 C 0.14 3.32 0.53 2.33 0.00 3.33 16 15 C 0.45 10.87 6.81 71.24 0.49 11.36 16 16 O -0.54 -15.42 16.28 21.96 0.36 -15.06 16 17 O -0.50 -10.38 9.50 -51.40 -0.49 -10.87 16 18 C -0.10 -2.20 4.26 30.20 0.13 -2.07 16 19 C -0.13 -3.17 4.46 28.74 0.13 -3.04 16 20 C -0.10 -2.41 5.26 28.74 0.15 -2.26 16 21 C -0.13 -3.17 5.61 30.20 0.17 -3.00 16 22 C -0.10 -1.91 5.31 30.14 0.16 -1.75 16 23 C -0.10 -2.05 4.63 31.31 0.14 -1.90 16 24 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 25 H 0.40 18.98 7.90 -92.71 -0.73 18.24 16 26 H 0.09 2.84 5.24 -2.35 -0.01 2.82 16 27 H 0.11 3.36 5.50 -2.39 -0.01 3.34 16 28 H 0.35 10.50 8.44 -89.69 -0.76 9.74 16 29 H 0.42 5.28 9.10 -73.94 -0.67 4.61 16 30 H 0.07 1.50 7.42 -2.39 -0.02 1.49 16 31 H 0.09 1.66 6.98 -2.39 -0.02 1.65 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.08 2.51 4.09 -2.38 -0.01 2.50 16 34 H 0.06 1.26 7.47 -2.39 -0.02 1.24 16 35 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 2.49 5.57 -2.39 -0.01 2.47 16 38 H 0.07 1.18 6.63 -2.39 -0.02 1.16 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.73 7.16 -2.38 -0.02 1.72 16 41 H 0.06 1.42 7.85 -2.39 -0.02 1.40 16 Total: -1.00 -66.77 313.81 2.19 -64.58 By element: Atomic # 1 Polarization: 43.63 SS G_CDS: -1.06 Total: 42.57 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 3.65 Total: 5.48 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -2.25 Total: -98.57 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -0.18 Total: -58.79 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -66.77 2.19 -64.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.869 kcal (2) G-P(sol) polarization free energy of solvation -66.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds