Wall clock time and date at job start Tue Mar 31 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47009 * 2 1 4 4 H 1.08999 * 109.47693 * 54.99561 * 3 2 1 5 5 C 1.50707 * 109.46979 * 294.99692 * 3 2 1 6 6 O 1.20825 * 120.00155 * 240.00181 * 5 3 2 7 7 O 1.34230 * 119.99660 * 60.00441 * 5 3 2 8 8 C 1.50701 * 109.47419 * 175.00024 * 3 2 1 9 9 O 1.21285 * 119.99549 * 359.97438 * 8 3 2 10 10 N 1.34767 * 120.00548 * 179.97438 * 8 3 2 11 11 C 1.46500 * 120.00581 * 179.97438 * 10 8 3 12 12 C 1.53031 * 109.46568 * 154.99982 * 11 10 8 13 13 C 1.53189 * 109.31453 * 181.38827 * 12 11 10 14 14 N 1.46923 * 108.89141 * 305.29105 * 13 12 11 15 15 C 1.36942 * 120.62973 * 233.67281 * 14 13 12 16 16 H 1.08009 * 119.99402 * 152.59682 * 15 14 13 17 17 C 1.38805 * 120.00238 * 332.59801 * 15 14 13 18 18 N 1.31625 * 120.00214 * 159.34567 * 17 15 14 19 19 Si 1.86801 * 120.00062 * 339.34781 * 17 15 14 20 20 H 1.48499 * 109.47084 * 92.95592 * 19 17 15 21 21 H 1.48493 * 109.47117 * 212.95272 * 19 17 15 22 22 H 1.48495 * 109.46871 * 332.95714 * 19 17 15 23 23 C 1.47204 * 118.55713 * 53.54081 * 14 13 12 24 24 C 1.53041 * 109.45977 * 275.06950 * 11 10 8 25 25 H 1.09003 * 109.47415 * 300.00086 * 1 2 3 26 26 H 1.09007 * 109.47490 * 60.00275 * 1 2 3 27 27 H 1.09001 * 109.47520 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47050 * 239.99655 * 2 1 3 29 29 H 1.08998 * 109.46933 * 119.99641 * 2 1 3 30 30 H 0.96698 * 116.99703 * 179.97438 * 7 5 3 31 31 H 0.97005 * 119.99777 * 0.02562 * 10 8 3 32 32 H 1.09006 * 109.44689 * 35.02755 * 11 10 8 33 33 H 1.09002 * 109.49720 * 61.43056 * 12 11 10 34 34 H 1.09000 * 109.49696 * 301.33759 * 12 11 10 35 35 H 1.08997 * 109.58812 * 65.15319 * 13 12 11 36 36 H 1.09002 * 109.58574 * 185.43314 * 13 12 11 37 37 H 0.96996 * 120.00339 * 180.02562 * 18 17 15 38 38 H 1.08991 * 109.53869 * 186.66950 * 23 14 13 39 39 H 1.09004 * 109.67659 * 66.36251 * 23 14 13 40 40 H 1.09001 * 109.49972 * 298.56623 * 24 11 10 41 41 H 1.09007 * 109.49466 * 58.66054 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6413 2.1162 -1.2878 6 8 2.4897 2.5530 -2.0289 7 8 0.3436 2.2310 -1.6114 8 6 3.5418 1.4444 0.1238 9 8 4.1449 0.3952 0.2046 10 7 4.2149 2.6118 0.1448 11 6 5.6749 2.6137 0.2657 12 6 6.2350 3.9033 -0.3385 13 6 7.7637 3.8860 -0.2415 14 7 8.1490 3.6619 1.1585 15 6 9.0067 4.5211 1.7922 16 1 8.9556 4.6420 2.8642 17 6 9.9416 5.2365 1.0567 18 7 10.4764 6.3298 1.5579 19 14 10.4408 4.6477 -0.6443 20 1 9.5907 5.3095 -1.6664 21 1 11.8650 4.9898 -0.8883 22 1 10.2633 3.1759 -0.7305 23 6 7.5909 2.4968 1.8641 24 6 6.0642 2.5296 1.7434 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 0.1369 2.6711 -2.4472 31 1 3.7325 3.4509 0.0805 32 1 6.0842 1.7553 -0.2670 33 1 5.8452 4.7611 0.2096 34 1 5.9376 3.9739 -1.3848 35 1 8.1602 3.0830 -0.8627 36 1 8.1622 4.8419 -0.5817 37 1 11.1295 6.8299 1.0439 38 1 7.8754 2.5367 2.9154 39 1 7.9731 1.5791 1.4168 40 1 5.6760 3.4003 2.2720 41 1 5.6452 1.6224 2.1789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594749178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:28 Heat of formation + Delta-G solvation = -112.147679 kcal Electronic energy + Delta-G solvation = -23296.055789 eV Core-core repulsion = 19790.380918 eV Total energy + Delta-G solvation = -3505.674871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15978 -39.54365 -37.70763 -36.53682 -34.94683 -34.49045 -32.19735 -30.46460 -30.29469 -28.68234 -25.00157 -23.67580 -23.00366 -22.36724 -21.37925 -20.14848 -19.51157 -18.53404 -17.59312 -17.18664 -16.71266 -16.17355 -15.81363 -15.02112 -14.59125 -14.22893 -14.14392 -14.07275 -13.76600 -13.61550 -13.18985 -12.99712 -12.72514 -12.44356 -12.16119 -12.08022 -11.91607 -11.76448 -11.46697 -11.22794 -10.98986 -10.82052 -10.79326 -10.54567 -10.28081 -10.17494 -9.95198 -9.69780 -9.45127 -8.82221 -8.62336 -6.98449 -5.94376 -3.30135 1.77264 2.14481 2.95085 3.12560 3.33304 3.50414 3.54238 4.23258 4.44841 4.54064 4.64438 4.83505 4.96677 5.05749 5.11494 5.21327 5.34431 5.40938 5.44295 5.69049 5.70681 5.78799 5.83164 6.05608 6.05812 6.07561 6.09902 6.20335 6.33083 6.42043 6.60528 6.63706 6.67651 6.71770 6.92443 7.46218 7.53046 7.96200 8.17028 8.33260 8.94025 9.72466 10.10580 11.21596 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033550 B = 0.003864 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.383903 B = 7245.150613 C = 7616.120549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.100 4.100 3 C -0.105 4.105 4 H 0.134 0.866 5 C 0.487 3.513 6 O -0.498 6.498 7 O -0.507 6.507 8 C 0.529 3.471 9 O -0.529 6.529 10 N -0.708 5.708 11 C 0.152 3.848 12 C -0.140 4.140 13 C 0.129 3.871 14 N -0.607 5.607 15 C -0.259 4.259 16 H 0.086 0.914 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.881 3.119 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.150 3.850 24 C -0.141 4.141 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.410 0.590 31 H 0.397 0.603 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.026 0.974 40 H 0.063 0.937 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.675 -9.016 -4.432 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.138 4.138 3 C -0.128 4.128 4 H 0.151 0.849 5 C 0.328 3.672 6 O -0.385 6.385 7 O -0.319 6.319 8 C 0.312 3.688 9 O -0.406 6.406 10 N -0.357 5.357 11 C 0.048 3.952 12 C -0.180 4.180 13 C 0.003 3.997 14 N -0.331 5.331 15 C -0.387 4.387 16 H 0.104 0.896 17 C -0.176 4.176 18 N -0.552 5.552 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.024 3.976 24 C -0.181 4.181 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.269 0.731 31 H 0.231 0.769 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.737 -9.706 -4.207 24.175 hybrid contribution -0.069 0.623 -1.578 1.698 sum -21.806 -9.083 -5.785 24.320 Atomic orbital electron populations 1.22027 0.94311 1.02280 1.03382 1.21312 0.96334 0.91309 1.04868 1.21443 0.95411 1.00559 0.95363 0.84887 1.22933 0.80373 0.76275 0.87618 1.90835 1.51421 1.44948 1.51249 1.84588 1.27701 1.74087 1.45539 1.19639 0.87720 0.84546 0.76864 1.90731 1.68995 1.31191 1.49648 1.46172 1.08739 1.07909 1.72836 1.21027 0.77455 0.99550 0.97140 1.22331 0.99231 0.96470 0.99942 1.21304 0.91266 1.00101 0.87023 1.44470 1.52606 1.26994 1.08988 1.18925 1.09579 1.16383 0.93814 0.89634 1.25275 0.97376 0.97061 0.97875 1.69835 1.31494 1.15102 1.38769 0.86971 0.76805 0.79820 0.85231 1.21607 1.23108 1.19465 1.20934 0.89982 0.89481 0.97198 1.22392 0.99271 1.01294 0.95178 0.92415 0.90564 0.92185 0.90770 0.89244 0.73092 0.76930 0.89834 0.91216 0.92020 0.95462 0.90532 0.92769 0.91566 0.95616 0.91787 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.55 37.15 0.35 -0.68 16 2 C -0.10 -0.86 4.74 -26.73 -0.13 -0.99 16 3 C -0.11 -0.98 2.66 -92.92 -0.25 -1.23 16 4 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 5 C 0.49 4.58 7.47 36.01 0.27 4.85 16 6 O -0.50 -6.50 16.15 -18.75 -0.30 -6.81 16 7 O -0.51 -2.99 10.57 -39.26 -0.41 -3.41 16 8 C 0.53 7.23 6.62 -10.99 -0.07 7.16 16 9 O -0.53 -9.05 15.58 5.55 0.09 -8.97 16 10 N -0.71 -9.79 4.47 -53.77 -0.24 -10.03 16 11 C 0.15 2.55 2.42 -67.89 -0.16 2.38 16 12 C -0.14 -2.50 5.55 -26.62 -0.15 -2.65 16 13 C 0.13 2.86 4.20 -3.71 -0.02 2.84 16 14 N -0.61 -14.56 2.78 -172.10 -0.48 -15.04 16 15 C -0.26 -7.26 10.05 -15.06 -0.15 -7.42 16 16 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 17 C 0.02 0.67 5.23 -17.43 -0.09 0.57 16 18 N -0.91 -27.96 13.97 55.49 0.78 -27.18 16 19 Si 0.88 22.61 24.35 -169.99 -4.14 18.47 16 20 H -0.29 -7.11 6.62 56.52 0.37 -6.74 16 21 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 22 H -0.27 -6.85 6.63 56.52 0.38 -6.48 16 23 C 0.15 3.05 6.53 -3.56 -0.02 3.03 16 24 C -0.14 -2.43 5.65 -26.61 -0.15 -2.58 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.48 5.46 -51.93 -0.28 0.20 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.80 7.95 -51.93 -0.41 0.39 16 30 H 0.41 0.90 9.10 45.56 0.41 1.32 16 31 H 0.40 4.69 8.29 -40.82 -0.34 4.35 16 32 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.03 0.61 7.08 -51.93 -0.37 0.24 16 36 H 0.08 1.84 4.49 -51.93 -0.23 1.60 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -34.71 326.42 -5.80 -40.52 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.44 Total: 2.23 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -0.57 Total: 5.29 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.06 Total: -52.25 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.63 Total: -19.18 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.14 Total: 18.47 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.71 -5.80 -40.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594749178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.633 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds