Wall clock time and date at job start Tue Mar 31 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47009 * 2 1 4 4 H 1.08999 * 109.47693 * 54.99561 * 3 2 1 5 5 C 1.50707 * 109.46979 * 294.99692 * 3 2 1 6 6 O 1.20825 * 120.00155 * 240.00181 * 5 3 2 7 7 O 1.34230 * 119.99660 * 60.00441 * 5 3 2 8 8 C 1.50701 * 109.47419 * 175.00024 * 3 2 1 9 9 O 1.21285 * 119.99549 * 359.97438 * 8 3 2 10 10 N 1.34767 * 120.00548 * 179.97438 * 8 3 2 11 11 C 1.46500 * 120.00581 * 179.97438 * 10 8 3 12 12 C 1.53031 * 109.46568 * 154.99982 * 11 10 8 13 13 C 1.53189 * 109.31453 * 181.38827 * 12 11 10 14 14 N 1.46923 * 108.89141 * 305.29105 * 13 12 11 15 15 C 1.36942 * 120.62973 * 233.67281 * 14 13 12 16 16 H 1.08009 * 119.99402 * 152.59682 * 15 14 13 17 17 C 1.38805 * 120.00238 * 332.59801 * 15 14 13 18 18 N 1.31625 * 120.00214 * 159.34567 * 17 15 14 19 19 Si 1.86801 * 120.00062 * 339.34781 * 17 15 14 20 20 H 1.48499 * 109.47084 * 92.95592 * 19 17 15 21 21 H 1.48493 * 109.47117 * 212.95272 * 19 17 15 22 22 H 1.48495 * 109.46871 * 332.95714 * 19 17 15 23 23 C 1.47204 * 118.55713 * 53.54081 * 14 13 12 24 24 C 1.53041 * 109.45977 * 275.06950 * 11 10 8 25 25 H 1.09003 * 109.47415 * 300.00086 * 1 2 3 26 26 H 1.09007 * 109.47490 * 60.00275 * 1 2 3 27 27 H 1.09001 * 109.47520 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47050 * 239.99655 * 2 1 3 29 29 H 1.08998 * 109.46933 * 119.99641 * 2 1 3 30 30 H 0.96698 * 116.99703 * 179.97438 * 7 5 3 31 31 H 0.97005 * 119.99777 * 0.02562 * 10 8 3 32 32 H 1.09006 * 109.44689 * 35.02755 * 11 10 8 33 33 H 1.09002 * 109.49720 * 61.43056 * 12 11 10 34 34 H 1.09000 * 109.49696 * 301.33759 * 12 11 10 35 35 H 1.08997 * 109.58812 * 65.15319 * 13 12 11 36 36 H 1.09002 * 109.58574 * 185.43314 * 13 12 11 37 37 H 0.96996 * 120.00339 * 180.02562 * 18 17 15 38 38 H 1.08991 * 109.53869 * 186.66950 * 23 14 13 39 39 H 1.09004 * 109.67659 * 66.36251 * 23 14 13 40 40 H 1.09001 * 109.49972 * 298.56623 * 24 11 10 41 41 H 1.09007 * 109.49466 * 58.66054 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6413 2.1162 -1.2878 6 8 2.4897 2.5530 -2.0289 7 8 0.3436 2.2310 -1.6114 8 6 3.5418 1.4444 0.1238 9 8 4.1449 0.3952 0.2046 10 7 4.2149 2.6118 0.1448 11 6 5.6749 2.6137 0.2657 12 6 6.2350 3.9033 -0.3385 13 6 7.7637 3.8860 -0.2415 14 7 8.1490 3.6619 1.1585 15 6 9.0067 4.5211 1.7922 16 1 8.9556 4.6420 2.8642 17 6 9.9416 5.2365 1.0567 18 7 10.4764 6.3298 1.5579 19 14 10.4408 4.6477 -0.6443 20 1 9.5907 5.3095 -1.6664 21 1 11.8650 4.9898 -0.8883 22 1 10.2633 3.1759 -0.7305 23 6 7.5909 2.4968 1.8641 24 6 6.0642 2.5296 1.7434 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 0.1369 2.6711 -2.4472 31 1 3.7325 3.4509 0.0805 32 1 6.0842 1.7553 -0.2670 33 1 5.8452 4.7611 0.2096 34 1 5.9376 3.9739 -1.3848 35 1 8.1602 3.0830 -0.8627 36 1 8.1622 4.8419 -0.5817 37 1 11.1295 6.8299 1.0439 38 1 7.8754 2.5367 2.9154 39 1 7.9731 1.5791 1.4168 40 1 5.6760 3.4003 2.2720 41 1 5.6452 1.6224 2.1789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594749178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:28 Heat of formation + Delta-G solvation = -138.396389 kcal Electronic energy + Delta-G solvation = -23297.194018 eV Core-core repulsion = 19790.380918 eV Total energy + Delta-G solvation = -3506.813100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.00128 -40.59720 -39.21084 -37.20604 -36.19854 -35.49812 -34.08589 -32.03661 -31.92868 -29.54786 -26.78245 -24.65276 -24.32909 -23.76631 -22.57006 -21.34458 -20.85752 -19.21755 -18.97558 -18.27338 -17.91858 -17.57399 -16.89396 -16.54655 -15.98494 -15.64814 -15.36087 -15.33398 -14.89100 -14.72180 -14.52933 -14.28681 -14.20602 -13.90019 -13.57383 -13.46069 -12.79356 -12.70863 -12.62399 -12.58378 -12.30614 -12.07467 -12.05188 -11.87182 -11.79085 -11.59619 -11.51749 -11.39579 -11.06580 -10.70488 -10.07785 -8.99156 -8.17916 -5.50108 1.06473 1.26173 1.28345 1.40861 1.49625 1.98867 2.24801 2.39978 3.03191 3.28142 3.39267 3.69310 3.76848 3.92772 4.01090 4.18344 4.23364 4.29059 4.44107 4.47315 4.53883 4.61365 4.67145 4.82998 4.87541 4.90462 4.99912 5.04586 5.12003 5.16977 5.24290 5.37731 5.44555 5.53113 5.57714 5.84862 6.11337 6.45424 6.88074 6.91403 7.11613 7.59040 8.00563 9.01835 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033550 B = 0.003864 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.383903 B = 7245.150613 C = 7616.120549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.098 4.098 3 C -0.099 4.099 4 H 0.169 0.831 5 C 0.498 3.502 6 O -0.539 6.539 7 O -0.491 6.491 8 C 0.525 3.475 9 O -0.567 6.567 10 N -0.701 5.701 11 C 0.160 3.840 12 C -0.127 4.127 13 C 0.123 3.877 14 N -0.619 5.619 15 C -0.248 4.248 16 H 0.056 0.944 17 C -0.031 4.031 18 N -0.955 5.955 19 Si 0.942 3.058 20 H -0.272 1.272 21 H -0.309 1.309 22 H -0.266 1.266 23 C 0.146 3.854 24 C -0.126 4.126 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.429 0.571 31 H 0.410 0.590 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.029 0.971 36 H 0.057 0.943 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.066 0.934 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.582 -9.769 -5.386 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.136 4.136 3 C -0.121 4.121 4 H 0.186 0.814 5 C 0.341 3.659 6 O -0.429 6.429 7 O -0.305 6.305 8 C 0.311 3.689 9 O -0.446 6.446 10 N -0.351 5.351 11 C 0.055 3.945 12 C -0.167 4.167 13 C -0.003 4.003 14 N -0.344 5.344 15 C -0.377 4.377 16 H 0.074 0.926 17 C -0.226 4.226 18 N -0.601 5.601 19 Si 0.771 3.229 20 H -0.199 1.199 21 H -0.238 1.238 22 H -0.191 1.191 23 C 0.020 3.980 24 C -0.166 4.166 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.292 0.708 31 H 0.245 0.755 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.735 -10.473 -5.184 27.356 hybrid contribution 0.736 0.803 -1.223 1.637 sum -23.999 -9.670 -6.407 26.655 Atomic orbital electron populations 1.21985 0.92223 1.02983 1.04120 1.21300 0.97970 0.90517 1.03794 1.21414 0.92083 1.01639 0.96962 0.81369 1.22786 0.80905 0.75274 0.86959 1.90833 1.52706 1.46950 1.52441 1.84531 1.25418 1.73735 1.46780 1.20335 0.89549 0.83593 0.75468 1.90716 1.70326 1.32426 1.51159 1.45980 1.07406 1.08904 1.72785 1.20691 0.79405 0.98121 0.96259 1.22135 0.96004 0.97196 1.01343 1.21335 0.94192 0.99011 0.85715 1.44578 1.52353 1.27619 1.09845 1.18878 1.09828 1.16184 0.92857 0.92595 1.25849 0.97864 0.97229 1.01684 1.69950 1.32869 1.16587 1.40680 0.85988 0.76014 0.79377 0.81554 1.19863 1.23830 1.19088 1.21077 0.92029 0.88191 0.96658 1.22201 0.96664 1.01956 0.95809 0.91076 0.90320 0.91616 0.92541 0.89792 0.70811 0.75456 0.91575 0.90839 0.90195 0.95262 0.92450 0.92870 0.91916 0.95251 0.91530 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.55 71.98 0.69 -0.79 16 2 C -0.10 -1.46 4.74 30.59 0.14 -1.32 16 3 C -0.10 -1.56 2.66 -12.28 -0.03 -1.60 16 4 H 0.17 1.48 8.14 -2.39 -0.02 1.46 16 5 C 0.50 7.92 7.47 71.24 0.53 8.45 16 6 O -0.54 -12.92 16.15 21.97 0.35 -12.57 16 7 O -0.49 -3.99 10.57 -51.42 -0.54 -4.53 16 8 C 0.52 13.33 6.62 87.66 0.58 13.91 16 9 O -0.57 -18.81 15.58 -3.04 -0.05 -18.85 16 10 N -0.70 -17.82 4.47 -442.42 -1.98 -19.80 16 11 C 0.16 5.09 2.42 45.02 0.11 5.20 16 12 C -0.13 -4.31 5.55 30.67 0.17 -4.14 16 13 C 0.12 5.29 4.20 86.36 0.36 5.66 16 14 N -0.62 -29.55 2.78 -698.40 -1.94 -31.49 16 15 C -0.25 -14.15 10.05 84.03 0.84 -13.31 16 16 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 17 C -0.03 -1.84 5.23 84.86 0.44 -1.40 16 18 N -0.95 -60.14 13.97 21.65 0.30 -59.83 16 19 Si 0.94 47.18 24.35 68.60 1.67 48.85 16 20 H -0.27 -12.79 6.62 99.48 0.66 -12.13 16 21 H -0.31 -15.72 7.11 99.48 0.71 -15.02 16 22 H -0.27 -13.02 6.63 99.48 0.66 -12.36 16 23 C 0.15 5.83 6.53 86.31 0.56 6.39 16 24 C -0.13 -4.15 5.65 30.67 0.17 -3.98 16 25 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.08 0.71 5.46 -2.38 -0.01 0.70 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.36 7.95 -2.39 -0.02 1.34 16 30 H 0.43 0.32 9.10 -74.06 -0.67 -0.35 16 31 H 0.41 8.52 8.29 -92.70 -0.77 7.75 16 32 H 0.07 2.39 7.58 -2.38 -0.02 2.37 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.03 1.26 7.08 -2.39 -0.02 1.24 16 36 H 0.06 2.69 4.49 -2.39 -0.01 2.68 16 37 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.06 2.51 7.94 -2.39 -0.02 2.49 16 39 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -76.15 326.42 1.91 -74.24 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -0.48 Total: 10.91 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 4.58 Total: 13.08 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -3.62 Total: -111.12 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.24 Total: -35.95 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.67 Total: 48.85 kcal Total: -76.15 1.91 -74.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594749178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.161 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds