Wall clock time and date at job start Tue Mar 31 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47054 * 2 1 4 4 H 1.08998 * 109.46852 * 304.99577 * 3 2 1 5 5 C 1.50699 * 109.47039 * 64.99689 * 3 2 1 6 6 O 1.20829 * 119.99615 * 119.99851 * 5 3 2 7 7 O 1.34229 * 120.00279 * 300.00469 * 5 3 2 8 8 C 1.50693 * 109.46877 * 184.99706 * 3 2 1 9 9 O 1.21286 * 120.00527 * 0.02562 * 8 3 2 10 10 N 1.34780 * 119.99690 * 179.97438 * 8 3 2 11 11 C 1.46503 * 119.99987 * 180.02562 * 10 8 3 12 12 C 1.53071 * 109.45178 * 84.78906 * 11 10 8 13 13 C 1.53201 * 109.29371 * 181.24494 * 12 11 10 14 14 N 1.46928 * 108.89275 * 305.57634 * 13 12 11 15 15 C 1.36934 * 120.63265 * 233.51651 * 14 13 12 16 16 H 1.07997 * 119.99862 * 151.82898 * 15 14 13 17 17 C 1.38806 * 120.00015 * 331.83027 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.08772 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.08448 * 17 15 14 20 20 H 1.48503 * 109.47142 * 60.00161 * 19 17 15 21 21 H 1.48498 * 109.47084 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47267 * 300.00095 * 19 17 15 23 23 C 1.46932 * 118.73342 * 53.53882 * 14 13 12 24 24 C 1.53045 * 109.45960 * 205.00187 * 11 10 8 25 25 H 1.09005 * 109.46992 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47455 * 300.00010 * 1 2 3 27 27 H 1.09002 * 109.46965 * 59.99887 * 1 2 3 28 28 H 1.08997 * 109.47455 * 239.99990 * 2 1 3 29 29 H 1.09002 * 109.46965 * 120.00113 * 2 1 3 30 30 H 0.96701 * 116.99636 * 180.02562 * 7 5 3 31 31 H 0.96995 * 120.00081 * 359.97438 * 10 8 3 32 32 H 1.09001 * 109.45637 * 324.97326 * 11 10 8 33 33 H 1.09002 * 109.39343 * 61.36736 * 12 11 10 34 34 H 1.09003 * 109.62467 * 301.25963 * 12 11 10 35 35 H 1.09000 * 109.58250 * 185.72113 * 13 12 11 36 36 H 1.08995 * 109.58477 * 65.43833 * 13 12 11 37 37 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.59017 * 66.18099 * 23 14 13 39 39 H 1.09009 * 109.58200 * 186.46074 * 23 14 13 40 40 H 1.09002 * 109.49555 * 58.66185 * 24 11 10 41 41 H 1.08999 * 109.49562 * 298.56688 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6413 2.1163 1.2877 6 8 2.4897 2.5531 2.0288 7 8 0.3436 2.2311 1.6113 8 6 3.5419 1.4443 -0.1238 9 8 4.1450 0.3952 -0.2045 10 7 4.2148 2.6119 -0.1457 11 6 5.6748 2.6137 -0.2666 12 6 6.0641 2.5247 -1.7443 13 6 7.5911 2.4955 -1.8647 14 7 8.1462 3.6595 -1.1607 15 6 9.0041 4.5161 -1.7973 16 1 9.0556 5.5518 -1.4957 17 6 9.8074 4.0533 -2.8304 18 7 10.0013 2.7606 -2.9847 19 14 10.6131 5.2650 -4.0017 20 1 11.5019 6.1764 -3.2370 21 1 11.4131 4.5226 -5.0088 22 1 9.5646 6.0592 -4.6909 23 6 7.7635 3.8867 0.2397 24 6 6.2348 3.9040 0.3366 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 0.1370 2.6712 2.4471 31 1 3.7324 3.4510 -0.0823 32 1 6.0844 1.7559 0.2668 33 1 5.6739 3.3936 -2.2744 34 1 5.6475 1.6158 -2.1785 35 1 7.8755 2.5346 -2.9162 36 1 7.9755 1.5795 -1.4160 37 1 10.5630 2.4372 -3.7063 38 1 8.1601 3.0842 0.8616 39 1 8.1640 4.8426 0.5774 40 1 5.9373 3.9755 1.3828 41 1 5.8450 4.7612 -0.2124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594749179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:32 Heat of formation + Delta-G solvation = -117.881810 kcal Electronic energy + Delta-G solvation = -23215.752934 eV Core-core repulsion = 19709.829413 eV Total energy + Delta-G solvation = -3505.923522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08138 -39.40913 -37.40739 -36.48259 -34.82520 -34.34589 -32.13604 -30.17024 -29.67635 -28.49348 -25.00761 -23.61766 -22.62269 -22.19661 -21.22799 -20.03992 -19.18930 -18.47814 -17.49424 -17.04903 -16.65521 -16.07896 -15.59800 -14.78165 -14.44746 -14.14217 -14.11234 -13.73498 -13.50789 -13.47461 -13.00802 -12.95056 -12.47060 -12.39113 -12.06512 -11.98795 -11.46654 -11.39177 -11.17184 -11.10546 -10.92094 -10.73119 -10.70189 -10.37370 -10.24274 -10.04946 -9.89508 -9.73090 -9.48242 -8.68860 -8.40170 -6.66106 -5.76532 -3.19686 1.82853 2.23868 3.05261 3.24816 3.39883 3.45554 3.46517 4.32181 4.51145 4.54043 4.72598 4.90955 5.13107 5.19278 5.34112 5.42832 5.49697 5.51931 5.66139 5.77619 5.85497 5.87514 6.11280 6.11535 6.13131 6.27464 6.36722 6.48551 6.62965 6.67975 6.79210 6.92285 6.97163 7.38913 7.51618 7.65248 7.71160 7.81139 8.30883 8.47269 9.23073 9.86317 10.43472 11.32049 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035078 B = 0.003588 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.025081 B = 7802.692798 C = 8167.136120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.106 4.106 4 H 0.133 0.867 5 C 0.488 3.512 6 O -0.498 6.498 7 O -0.507 6.507 8 C 0.527 3.473 9 O -0.528 6.528 10 N -0.708 5.708 11 C 0.152 3.848 12 C -0.147 4.147 13 C 0.174 3.826 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.149 3.851 24 C -0.138 4.138 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.409 0.591 31 H 0.394 0.606 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.021 0.979 37 H 0.255 0.745 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.104 -1.413 6.691 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.139 4.139 3 C -0.128 4.128 4 H 0.150 0.850 5 C 0.329 3.671 6 O -0.385 6.385 7 O -0.319 6.319 8 C 0.310 3.690 9 O -0.404 6.404 10 N -0.357 5.357 11 C 0.049 3.951 12 C -0.187 4.187 13 C 0.048 3.952 14 N -0.315 5.315 15 C -0.385 4.385 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.022 3.978 24 C -0.178 4.178 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.268 0.732 31 H 0.228 0.772 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.039 0.961 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.175 -2.322 6.347 21.277 hybrid contribution 0.002 1.348 -0.079 1.351 sum -20.173 -0.974 6.268 21.147 Atomic orbital electron populations 1.22025 0.94374 1.02240 1.03319 1.21317 0.96258 0.91374 1.04917 1.21451 0.95618 1.00487 0.95239 0.84981 1.22956 0.80315 0.76238 0.87633 1.90827 1.51415 1.44992 1.51263 1.84596 1.27772 1.74095 1.45479 1.19618 0.87618 0.84655 0.77061 1.90742 1.68923 1.31189 1.49534 1.46217 1.08977 1.07679 1.72809 1.21079 0.76975 0.99334 0.97738 1.22585 1.01371 1.00465 0.94267 1.20747 0.86128 0.88757 0.99610 1.44096 1.51862 1.29278 1.06308 1.19138 1.14661 0.90394 1.14300 0.91699 1.25063 0.97450 0.95723 1.01345 1.70026 1.40129 1.11904 1.32507 0.86364 0.78986 0.80447 0.80912 1.20890 1.21631 1.21069 1.20845 0.90301 0.99027 0.87676 1.22318 0.99850 0.96281 0.99333 0.92208 0.90603 0.92451 0.89209 0.90763 0.73187 0.77233 0.89999 0.92685 0.92792 0.89266 0.96121 0.93531 0.96181 0.92333 0.92409 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.55 37.16 0.36 -0.79 16 2 C -0.10 -0.96 4.74 -26.73 -0.13 -1.08 16 3 C -0.11 -1.08 2.66 -92.93 -0.25 -1.33 16 4 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 5 C 0.49 4.84 7.47 36.01 0.27 5.11 16 6 O -0.50 -6.70 16.15 -18.75 -0.30 -7.00 16 7 O -0.51 -3.19 10.57 -39.26 -0.41 -3.61 16 8 C 0.53 7.86 6.61 -10.99 -0.07 7.79 16 9 O -0.53 -9.86 15.58 5.55 0.09 -9.78 16 10 N -0.71 -10.57 4.47 -53.75 -0.24 -10.81 16 11 C 0.15 2.76 2.41 -67.87 -0.16 2.60 16 12 C -0.15 -2.95 5.66 -26.59 -0.15 -3.10 16 13 C 0.17 4.29 5.30 -3.71 -0.02 4.27 16 14 N -0.59 -15.05 3.00 -172.31 -0.52 -15.57 16 15 C -0.26 -7.05 9.58 -15.06 -0.14 -7.19 16 16 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 18 N -0.90 -26.50 11.20 55.49 0.62 -25.88 16 19 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 24 C -0.14 -2.43 5.55 -26.61 -0.15 -2.58 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.52 5.46 -51.93 -0.28 0.24 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.41 1.00 9.10 45.56 0.41 1.41 16 31 H 0.39 4.96 8.29 -40.82 -0.34 4.63 16 32 H 0.08 1.68 7.58 -51.93 -0.39 1.29 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.20 7.93 -51.92 -0.41 0.79 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -33.90 332.84 -6.85 -40.76 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.52 Total: 3.32 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -0.56 Total: 6.82 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.14 Total: -52.26 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.63 Total: -20.38 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.90 -6.85 -40.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594749179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.124 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds