Wall clock time and date at job start Tue Mar 31 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47054 * 2 1 4 4 H 1.08998 * 109.46852 * 304.99577 * 3 2 1 5 5 C 1.50699 * 109.47039 * 64.99689 * 3 2 1 6 6 O 1.20829 * 119.99615 * 119.99851 * 5 3 2 7 7 O 1.34229 * 120.00279 * 300.00469 * 5 3 2 8 8 C 1.50693 * 109.46877 * 184.99706 * 3 2 1 9 9 O 1.21286 * 120.00527 * 0.02562 * 8 3 2 10 10 N 1.34780 * 119.99690 * 179.97438 * 8 3 2 11 11 C 1.46503 * 119.99987 * 180.02562 * 10 8 3 12 12 C 1.53071 * 109.45178 * 84.78906 * 11 10 8 13 13 C 1.53201 * 109.29371 * 181.24494 * 12 11 10 14 14 N 1.46928 * 108.89275 * 305.57634 * 13 12 11 15 15 C 1.36934 * 120.63265 * 233.51651 * 14 13 12 16 16 H 1.07997 * 119.99862 * 151.82898 * 15 14 13 17 17 C 1.38806 * 120.00015 * 331.83027 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.08772 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.08448 * 17 15 14 20 20 H 1.48503 * 109.47142 * 60.00161 * 19 17 15 21 21 H 1.48498 * 109.47084 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47267 * 300.00095 * 19 17 15 23 23 C 1.46932 * 118.73342 * 53.53882 * 14 13 12 24 24 C 1.53045 * 109.45960 * 205.00187 * 11 10 8 25 25 H 1.09005 * 109.46992 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47455 * 300.00010 * 1 2 3 27 27 H 1.09002 * 109.46965 * 59.99887 * 1 2 3 28 28 H 1.08997 * 109.47455 * 239.99990 * 2 1 3 29 29 H 1.09002 * 109.46965 * 120.00113 * 2 1 3 30 30 H 0.96701 * 116.99636 * 180.02562 * 7 5 3 31 31 H 0.96995 * 120.00081 * 359.97438 * 10 8 3 32 32 H 1.09001 * 109.45637 * 324.97326 * 11 10 8 33 33 H 1.09002 * 109.39343 * 61.36736 * 12 11 10 34 34 H 1.09003 * 109.62467 * 301.25963 * 12 11 10 35 35 H 1.09000 * 109.58250 * 185.72113 * 13 12 11 36 36 H 1.08995 * 109.58477 * 65.43833 * 13 12 11 37 37 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 38 38 H 1.08996 * 109.59017 * 66.18099 * 23 14 13 39 39 H 1.09009 * 109.58200 * 186.46074 * 23 14 13 40 40 H 1.09002 * 109.49555 * 58.66185 * 24 11 10 41 41 H 1.08999 * 109.49562 * 298.56688 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6413 2.1163 1.2877 6 8 2.4897 2.5531 2.0288 7 8 0.3436 2.2311 1.6113 8 6 3.5419 1.4443 -0.1238 9 8 4.1450 0.3952 -0.2045 10 7 4.2148 2.6119 -0.1457 11 6 5.6748 2.6137 -0.2666 12 6 6.0641 2.5247 -1.7443 13 6 7.5911 2.4955 -1.8647 14 7 8.1462 3.6595 -1.1607 15 6 9.0041 4.5161 -1.7973 16 1 9.0556 5.5518 -1.4957 17 6 9.8074 4.0533 -2.8304 18 7 10.0013 2.7606 -2.9847 19 14 10.6131 5.2650 -4.0017 20 1 11.5019 6.1764 -3.2370 21 1 11.4131 4.5226 -5.0088 22 1 9.5646 6.0592 -4.6909 23 6 7.7635 3.8867 0.2397 24 6 6.2348 3.9040 0.3366 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 0.1370 2.6712 2.4471 31 1 3.7324 3.4510 -0.0823 32 1 6.0844 1.7559 0.2668 33 1 5.6739 3.3936 -2.2744 34 1 5.6475 1.6158 -2.1785 35 1 7.8755 2.5346 -2.9162 36 1 7.9755 1.5795 -1.4160 37 1 10.5630 2.4372 -3.7063 38 1 8.1601 3.0842 0.8616 39 1 8.1640 4.8426 0.5774 40 1 5.9373 3.9755 1.3828 41 1 5.8450 4.7612 -0.2124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594749179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:31 Heat of formation + Delta-G solvation = -142.302700 kcal Electronic energy + Delta-G solvation = -23216.811904 eV Core-core repulsion = 19709.829413 eV Total energy + Delta-G solvation = -3506.982491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98981 -40.54960 -39.02158 -37.19364 -36.13125 -35.50397 -33.93629 -31.85836 -31.36946 -29.49156 -26.87817 -24.44214 -24.01376 -23.91017 -22.45660 -21.33720 -20.67975 -19.20460 -18.88885 -18.25820 -17.90990 -17.32770 -16.73698 -16.56328 -15.75814 -15.54851 -15.37057 -15.11525 -14.87225 -14.74902 -14.34869 -14.24857 -14.09730 -13.55672 -13.23891 -13.03482 -12.78935 -12.69795 -12.66930 -12.56441 -12.14926 -12.09628 -12.07062 -11.89225 -11.83269 -11.56311 -11.51458 -11.43984 -10.96471 -10.58046 -10.03523 -8.72602 -7.87906 -5.34908 1.06880 1.27538 1.47993 1.50617 1.57656 2.00155 2.25817 2.51648 3.27400 3.38003 3.64096 3.72258 3.85037 3.97845 4.06654 4.24240 4.29669 4.44528 4.46938 4.53562 4.63875 4.76742 4.83778 4.88394 5.01348 5.05022 5.10182 5.16862 5.23997 5.27951 5.43143 5.49085 5.53408 5.57652 5.62916 5.68416 6.37691 6.47744 6.92815 7.12556 7.14956 7.82768 8.36223 9.19139 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035078 B = 0.003588 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.025081 B = 7802.692798 C = 8167.136120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 C -0.099 4.099 4 H 0.169 0.831 5 C 0.500 3.500 6 O -0.538 6.538 7 O -0.490 6.490 8 C 0.521 3.479 9 O -0.572 6.572 10 N -0.699 5.699 11 C 0.162 3.838 12 C -0.129 4.129 13 C 0.182 3.818 14 N -0.609 5.609 15 C -0.266 4.266 16 H 0.073 0.927 17 C -0.052 4.052 18 N -0.938 5.938 19 Si 0.972 3.028 20 H -0.274 1.274 21 H -0.296 1.296 22 H -0.275 1.275 23 C 0.143 3.857 24 C -0.121 4.121 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.430 0.570 31 H 0.410 0.590 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.058 0.942 36 H -0.012 1.012 37 H 0.250 0.750 38 H 0.009 0.991 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.831 0.366 7.008 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.137 4.137 3 C -0.120 4.120 4 H 0.186 0.814 5 C 0.343 3.657 6 O -0.428 6.428 7 O -0.304 6.304 8 C 0.307 3.693 9 O -0.451 6.451 10 N -0.349 5.349 11 C 0.057 3.943 12 C -0.169 4.169 13 C 0.056 3.944 14 N -0.333 5.333 15 C -0.396 4.396 16 H 0.091 0.909 17 C -0.248 4.248 18 N -0.584 5.584 19 Si 0.799 3.201 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.201 1.201 23 C 0.017 3.983 24 C -0.160 4.160 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.293 0.707 31 H 0.246 0.754 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.006 0.994 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.982 -0.502 6.704 23.945 hybrid contribution 0.806 0.749 -0.101 1.105 sum -22.175 0.247 6.603 23.139 Atomic orbital electron populations 1.21980 0.91977 1.03013 1.04194 1.21310 0.98144 0.90599 1.03667 1.21396 0.91834 1.01636 0.97178 0.81385 1.22691 0.80949 0.75263 0.86819 1.90826 1.52696 1.46910 1.52336 1.84530 1.25287 1.73747 1.46803 1.20425 0.89689 0.83665 0.75515 1.90728 1.70462 1.32691 1.51240 1.45977 1.07433 1.08792 1.72663 1.20676 0.79224 0.98676 0.95706 1.22313 0.97752 1.00700 0.96134 1.20478 0.89069 0.87531 0.97335 1.44343 1.51953 1.28935 1.08042 1.19540 1.14515 0.91091 1.14461 0.90947 1.25890 0.98505 0.97294 1.03075 1.70204 1.41238 1.13891 1.33036 0.85282 0.78065 0.78198 0.78529 1.19952 1.22236 1.20124 1.21015 0.92985 0.98984 0.85341 1.22107 0.96743 0.96175 1.01011 0.91614 0.90114 0.91064 0.90156 0.92547 0.70739 0.75357 0.92807 0.91735 0.93015 0.92398 0.99351 0.94097 0.97265 0.91429 0.89962 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.55 71.98 0.69 -1.01 16 2 C -0.10 -1.72 4.74 30.60 0.15 -1.58 16 3 C -0.10 -1.78 2.66 -12.29 -0.03 -1.81 16 4 H 0.17 1.83 8.14 -2.39 -0.02 1.81 16 5 C 0.50 8.51 7.47 71.24 0.53 9.05 16 6 O -0.54 -13.32 16.15 21.96 0.35 -12.96 16 7 O -0.49 -4.28 10.57 -51.41 -0.54 -4.82 16 8 C 0.52 15.04 6.61 87.65 0.58 15.62 16 9 O -0.57 -21.71 15.58 -3.05 -0.05 -21.76 16 10 N -0.70 -19.78 4.47 -442.34 -1.98 -21.75 16 11 C 0.16 5.82 2.41 45.03 0.11 5.93 16 12 C -0.13 -5.23 5.66 30.69 0.17 -5.06 16 13 C 0.18 9.35 5.30 86.37 0.46 9.81 16 14 N -0.61 -31.41 3.00 -699.07 -2.09 -33.50 16 15 C -0.27 -14.77 9.58 84.03 0.81 -13.96 16 16 H 0.07 3.84 7.88 -2.91 -0.02 3.81 16 17 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 18 N -0.94 -57.00 11.20 21.65 0.24 -56.76 16 19 Si 0.97 45.10 29.59 68.60 2.03 47.13 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.14 6.04 6.52 86.36 0.56 6.60 16 24 C -0.12 -4.06 5.55 30.67 0.17 -3.89 16 25 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.08 0.82 5.46 -2.39 -0.01 0.80 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 1.55 7.95 -2.39 -0.02 1.53 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.43 0.41 9.10 -74.06 -0.67 -0.27 16 31 H 0.41 9.17 8.29 -92.71 -0.77 8.40 16 32 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 3.31 6.06 -2.39 -0.01 3.30 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.07 2.70 7.93 -2.38 -0.02 2.68 16 40 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -76.02 332.84 2.18 -73.84 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -0.39 Total: 13.45 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 4.61 Total: 17.14 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -3.83 Total: -112.01 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.24 Total: -39.54 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.02 2.18 -73.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594749179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.459 kcal (2) G-P(sol) polarization free energy of solvation -76.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds