Wall clock time and date at job start Tue Mar 31 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47137 * 2 1 4 4 C 1.36941 * 119.99703 * 272.13868 * 3 2 1 5 5 H 1.07996 * 119.99973 * 8.56272 * 4 3 2 6 6 C 1.38811 * 119.99948 * 188.56946 * 4 3 2 7 7 N 1.31619 * 120.00300 * 24.82167 * 6 4 3 8 8 Si 1.86810 * 119.99922 * 204.82279 * 6 4 3 9 9 H 1.48495 * 109.46832 * 60.00073 * 8 6 4 10 10 H 1.48500 * 109.46726 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47002 * 299.99767 * 8 6 4 12 12 C 1.46492 * 120.00530 * 92.13430 * 3 2 1 13 13 C 1.50707 * 109.47079 * 89.99909 * 12 3 2 14 14 O 1.21273 * 119.99898 * 0.02562 * 13 12 3 15 15 N 1.34772 * 119.99938 * 180.02562 * 13 12 3 16 16 C 1.46929 * 120.63246 * 180.02562 * 15 13 12 17 17 C 1.53182 * 108.89382 * 233.55993 * 16 15 13 18 18 C 1.53071 * 109.29773 * 305.57708 * 17 16 15 19 19 C 1.50703 * 109.44253 * 181.23762 * 18 17 16 20 20 O 1.20836 * 119.99590 * 239.79322 * 19 18 17 21 21 O 1.34221 * 120.00076 * 59.79730 * 19 18 17 22 22 C 1.53039 * 109.66014 * 61.15187 * 18 17 16 23 23 C 1.46928 * 120.63325 * 0.02562 * 15 13 12 24 24 H 1.08997 * 109.47273 * 299.99799 * 1 2 3 25 25 H 1.08997 * 109.47213 * 60.00463 * 1 2 3 26 26 H 1.09010 * 109.47038 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47017 * 239.99725 * 2 1 3 28 28 H 1.09006 * 109.47399 * 119.99407 * 2 1 3 29 29 H 0.97000 * 120.00332 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47087 * 330.00107 * 12 3 2 31 31 H 1.09005 * 109.47599 * 210.00124 * 12 3 2 32 32 H 1.09001 * 109.58175 * 353.42127 * 16 15 13 33 33 H 1.08996 * 109.58859 * 113.69762 * 16 15 13 34 34 H 1.09002 * 109.50201 * 65.38724 * 17 16 15 35 35 H 1.09002 * 109.50143 * 185.48009 * 17 16 15 36 36 H 1.08999 * 109.34654 * 301.12942 * 18 17 16 37 37 H 0.96697 * 117.00215 * 180.02562 * 21 19 18 38 38 H 1.09004 * 109.49892 * 178.74952 * 22 18 17 39 39 H 1.09006 * 109.52415 * 58.66869 * 22 18 17 40 40 H 1.08996 * 109.59072 * 246.16037 * 23 15 13 41 41 H 1.08997 * 109.58535 * 6.44251 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2048 2.0414 -1.1852 5 1 1.8638 1.5987 -2.1093 6 6 2.8321 3.2796 -1.1986 7 7 3.6608 3.6081 -0.2302 8 14 2.5003 4.4798 -2.5912 9 1 1.0530 4.8105 -2.6252 10 1 3.2861 5.7207 -2.3729 11 1 2.8975 3.8623 -3.8820 12 6 2.3070 2.0561 1.2677 13 6 3.7447 1.8142 1.6495 14 8 4.4579 1.1445 0.9330 15 7 4.2377 2.3423 2.7873 16 6 5.6374 2.1158 3.1727 17 6 5.6747 1.5502 4.5958 18 6 4.9054 2.4853 5.5321 19 6 4.9658 1.9477 6.9387 20 8 3.9458 1.6662 7.5221 21 8 6.1525 1.7818 7.5433 22 6 3.4451 2.5762 5.0833 23 6 3.3859 3.1554 3.6659 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0278 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 4.0989 4.4735 -0.2394 30 1 1.6532 1.6625 2.0460 31 1 2.1358 3.1269 1.1566 32 1 6.0953 1.4050 2.4847 33 1 6.1826 3.0590 3.1399 34 1 5.2105 0.5640 4.6077 35 1 6.7097 1.4696 4.9282 36 1 5.3566 3.4771 5.5027 37 1 6.1408 1.4338 8.4454 38 1 2.8947 3.2250 5.7646 39 1 2.9997 1.5813 5.0888 40 1 3.7472 4.1837 3.6757 41 1 2.3587 3.1325 3.3021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596200179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:31 Heat of formation + Delta-G solvation = -100.603921 kcal Electronic energy + Delta-G solvation = -23746.554346 eV Core-core repulsion = 20241.380050 eV Total energy + Delta-G solvation = -3505.174296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.61791 -38.95736 -36.81832 -36.18835 -35.17200 -32.51937 -31.83293 -30.96834 -29.14143 -27.08897 -25.70121 -23.66846 -22.99452 -22.18865 -20.67149 -20.04838 -18.44626 -18.14657 -16.88140 -16.61268 -15.97364 -15.56095 -15.15941 -14.85417 -14.29338 -13.85020 -13.77285 -13.57470 -13.48133 -13.45052 -12.60109 -12.46136 -12.17708 -12.04331 -11.78167 -11.64441 -11.58179 -11.27001 -11.05664 -11.02547 -10.73645 -10.70695 -10.57186 -10.40369 -10.33347 -10.14125 -9.84890 -9.75177 -8.73963 -8.19972 -7.73395 -6.87867 -5.77987 -3.02964 2.08839 2.91568 3.42652 3.48294 3.50105 3.89633 4.25159 4.56051 4.58922 4.72785 4.97222 5.24132 5.31092 5.38178 5.45107 5.50640 5.58580 5.79264 5.84213 5.90166 6.00637 6.01735 6.08912 6.21658 6.30525 6.32679 6.35194 6.42411 6.43805 6.60665 6.68931 6.86457 7.09260 7.20031 7.43927 7.76369 7.80821 8.28609 8.54421 9.19512 9.70594 9.90773 10.31339 11.32130 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022592 B = 0.004732 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.052678 B = 5915.591857 C = 6479.408964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 N -0.577 5.577 4 C -0.243 4.243 5 H 0.076 0.924 6 C -0.002 4.002 7 N -0.899 5.899 8 Si 0.901 3.099 9 H -0.286 1.286 10 H -0.293 1.293 11 H -0.286 1.286 12 C 0.165 3.835 13 C 0.536 3.464 14 O -0.530 6.530 15 N -0.630 5.630 16 C 0.119 3.881 17 C -0.123 4.123 18 C -0.076 4.076 19 C 0.483 3.517 20 O -0.517 6.517 21 O -0.517 6.517 22 C -0.120 4.120 23 C 0.122 3.878 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.252 0.748 30 H 0.035 0.965 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.406 0.594 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -0.997 14.154 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 N -0.296 5.296 4 C -0.372 4.372 5 H 0.094 0.906 6 C -0.199 4.199 7 N -0.545 5.545 8 Si 0.731 3.269 9 H -0.213 1.213 10 H -0.219 1.219 11 H -0.212 1.212 12 C 0.035 3.965 13 C 0.325 3.675 14 O -0.404 6.404 15 N -0.368 5.368 16 C -0.005 4.005 17 C -0.161 4.161 18 C -0.096 4.096 19 C 0.325 3.675 20 O -0.405 6.405 21 O -0.328 6.328 22 C -0.158 4.158 23 C -0.002 4.002 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.127 0.873 37 H 0.264 0.736 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.819 -1.174 13.427 13.600 hybrid contribution 0.143 0.650 0.069 0.669 sum 1.962 -0.524 13.496 13.648 Atomic orbital electron populations 1.22317 0.99532 0.99115 1.01470 1.20711 0.91839 0.86344 0.99176 1.43952 1.74060 1.09521 1.02113 1.19208 1.32315 0.99252 0.86407 0.90569 1.24662 0.97558 0.99512 0.98193 1.69898 1.28001 1.21658 1.34960 0.86361 0.77716 0.80891 0.81931 1.21323 1.21872 1.21219 1.20740 0.89193 1.00008 0.86557 1.22149 0.92190 0.76022 0.77143 1.90489 1.60521 1.40224 1.49124 1.48373 1.10010 1.54478 1.23972 1.21233 0.85175 1.00653 0.93402 1.21960 1.00164 0.98544 0.95461 1.21102 0.99903 1.01529 0.87023 1.23763 0.80405 0.74023 0.89262 1.90711 1.35937 1.47451 1.66420 1.84564 1.35295 1.78461 1.34507 1.21923 0.93084 1.03362 0.97467 1.21450 0.96493 0.94277 0.88028 0.93777 0.92848 0.94311 0.93679 0.94728 0.93720 0.94725 0.87919 0.89081 0.92606 0.91295 0.90148 0.87270 0.73562 0.90339 0.90688 0.92166 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.23 37.15 0.38 -2.57 16 2 C 0.15 3.13 6.39 -4.05 -0.03 3.10 16 3 N -0.58 -14.43 2.02 -174.61 -0.35 -14.78 16 4 C -0.24 -6.66 9.70 -15.06 -0.15 -6.81 16 5 H 0.08 2.07 7.94 -52.49 -0.42 1.65 16 6 C 0.00 -0.06 4.90 -17.43 -0.09 -0.15 16 7 N -0.90 -25.05 8.96 55.49 0.50 -24.56 16 8 Si 0.90 21.71 29.62 -169.99 -5.04 16.67 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.17 3.80 3.77 -5.19 -0.02 3.78 16 13 C 0.54 12.52 5.76 -10.98 -0.06 12.45 16 14 O -0.53 -14.74 15.57 5.56 0.09 -14.66 16 15 N -0.63 -11.61 2.97 -172.75 -0.51 -12.13 16 16 C 0.12 1.92 6.43 -3.71 -0.02 1.89 16 17 C -0.12 -1.53 5.31 -26.60 -0.14 -1.67 16 18 C -0.08 -0.87 2.58 -91.71 -0.24 -1.11 16 19 C 0.48 5.56 7.63 36.01 0.27 5.83 16 20 O -0.52 -7.41 16.74 -18.76 -0.31 -7.72 16 21 O -0.52 -4.57 13.30 -39.23 -0.52 -5.09 16 22 C -0.12 -1.48 4.66 -26.59 -0.12 -1.61 16 23 C 0.12 1.77 6.34 -3.69 -0.02 1.75 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 27 H 0.04 0.99 8.06 -51.93 -0.42 0.57 16 28 H 0.03 0.71 8.06 -51.93 -0.42 0.30 16 29 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.03 0.69 7.62 -51.93 -0.40 0.30 16 31 H 0.10 2.51 6.10 -51.93 -0.32 2.19 16 32 H 0.09 1.69 7.00 -51.93 -0.36 1.33 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.41 1.87 9.10 45.56 0.41 2.28 16 38 H 0.08 0.87 8.07 -51.93 -0.42 0.46 16 39 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.31 5.93 -51.93 -0.31 1.01 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -34.25 333.60 -6.94 -41.19 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.58 Total: 1.14 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -0.23 Total: 14.90 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.37 Total: -51.46 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.75 Total: -27.47 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.04 Total: 16.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.25 -6.94 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.415 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds